Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:20:05 (834449): wrapper (7.7.26015): starting
21:20:05 (834449): wrapper: running run_atlas (--nthreads 4)
[2026-02-28 21:20:05] Arguments: --nthreads 4
[2026-02-28 21:20:05] Threads: 4
[2026-02-28 21:20:05] Checking for CVMFS
[2026-02-28 21:20:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 21:20:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 21:20:05] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 21:20:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 21:20:06] 2.9.2.0 79673 4566 97152 156744 1 49 27848244 36864001 0 130560 0 1964620 99.981 191507 7318 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 21:20:06] CVMFS is ok
[2026-02-28 21:20:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 21:20:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 21:20:06] Further information can be found at the LHC@home message board.
[2026-02-28 21:20:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 21:20:06] Checking for apptainer binary...
[2026-02-28 21:20:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 21:20:06] Running /usr/bin/apptainer --version
[2026-02-28 21:20:06] apptainer version 1.4.1-1.1
[2026-02-28 21:20:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 21:20:06] thA309
[2026-02-28 21:20:06] apptainer works
[2026-02-28 21:20:06] Set ATHENA_PROC_NUMBER=4
[2026-02-28 21:20:06] Set ATHENA_CORE_NUMBER=4
[2026-02-28 21:20:06] Starting ATLAS job with PandaID=7032357838
[2026-02-28 21:20:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 22:45:38]  *** The last 200 lines of the pilot log: ***
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | job 7032357838 has completed (purged errors)
[2026-02-28 22:45:38] 2026-02-28 21:45:17,272 | INFO     | overall cleanup function is called
[2026-02-28 22:45:38] 2026-02-28 21:45:18,280 | INFO     | --- collectZombieJob: --- 10, [843082]
[2026-02-28 22:45:38] 2026-02-28 21:45:18,280 | INFO     | zombie collector waiting for pid 843082
[2026-02-28 22:45:38] 2026-02-28 21:45:18,280 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 22:45:38] 2026-02-28 21:45:18,280 | INFO     | collected zombie processes
[2026-02-28 22:45:38] 2026-02-28 21:45:18,280 | INFO     | will attempt to kill all subprocesses of pid=843082
[2026-02-28 22:45:38] 2026-02-28 21:45:18,331 | INFO     | process IDs to be killed: [843082] (in reverse order)
[2026-02-28 22:45:38] 2026-02-28 21:45:18,368 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 22:45:38] 2026-02-28 21:45:18,368 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 22:45:38] 2026-02-28 21:45:18,370 | INFO     | did not find any defunct processes belonging to 843082
[2026-02-28 22:45:38] 2026-02-28 21:45:18,371 | INFO     | did not find any defunct processes belonging to 843082
[2026-02-28 22:45:38] 2026-02-28 21:45:18,371 | INFO     | ready for new job
[2026-02-28 22:45:38] 2026-02-28 21:45:18,371 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 22:45:38] 2026-02-28 21:45:18,372 | INFO     | **************************************
[2026-02-28 22:45:38] 2026-02-28 21:45:18,372 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 22:45:38] 2026-02-28 21:45:18,372 | INFO     | **************************************
[2026-02-28 22:45:38] 2026-02-28 21:45:18,372 | INFO     | 
[2026-02-28 22:45:38] 2026-02-28 21:45:18,373 | INFO     | architecture information:
[2026-02-28 22:45:38] 2026-02-28 21:45:18,373 | INFO     | executing command: cat /etc/os-release
[2026-02-28 22:45:38] 2026-02-28 21:45:18,388 | INFO     | cat /etc/os-release:
[2026-02-28 22:45:38] NAME="CentOS Linux"
[2026-02-28 22:45:38] VERSION="7 (Core)"
[2026-02-28 22:45:38] ID="centos"
[2026-02-28 22:45:38] ID_LIKE="rhel fedora"
[2026-02-28 22:45:38] VERSION_ID="7"
[2026-02-28 22:45:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 22:45:38] ANSI_COLOR="0;31"
[2026-02-28 22:45:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 22:45:38] HOME_URL="https://www.centos.org/"
[2026-02-28 22:45:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 22:45:38] 
[2026-02-28 22:45:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 22:45:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 22:45:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 22:45:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 22:45:38] 
[2026-02-28 22:45:38] 2026-02-28 21:45:18,388 | INFO     | **************************************
[2026-02-28 22:45:38] 2026-02-28 21:45:18,891 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 22:45:38] 2026-02-28 21:45:18,910 | INFO     | sufficient remaining disk space (230957252608 B)
[2026-02-28 22:45:38] 2026-02-28 21:45:18,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 22:45:38] 2026-02-28 21:45:18,910 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 22:45:38] 2026-02-28 21:45:18,910 | INFO     | update_server=False
[2026-02-28 22:45:38] 2026-02-28 21:45:18,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 22:45:38] 2026-02-28 21:45:18,910 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-28 22:45:38] 2026-02-28 21:45:18,911 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 22:45:38] 2026-02-28 21:45:18,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 22:45:38] 2026-02-28 21:45:18,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 22:45:38] 2026-02-28 21:45:18,911 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 22:45:38] 2026-02-28 21:45:18,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 22:45:38] 2026-02-28 21:45:19,125 | INFO     | all payload control threads have been joined
[2026-02-28 22:45:38] 2026-02-28 21:45:19,217 | INFO     | all job control threads have been joined
[2026-02-28 22:45:38] 2026-02-28 21:45:19,608 | INFO     | all data control threads have been joined
[2026-02-28 22:45:38] 2026-02-28 21:45:19,801 | WARNING  | process 843082 can no longer be monitored (due to stat problems) - aborting
[2026-02-28 22:45:38] 2026-02-28 21:45:19,838 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 22:45:38] 2026-02-28 21:45:19,884 | INFO     | number of running child processes to parent process 843082: 1
[2026-02-28 22:45:38] 2026-02-28 21:45:19,884 | INFO     | maximum number of monitored processes: 6
[2026-02-28 22:45:38] 2026-02-28 21:45:19,884 | INFO     | aborting job monitoring since job object (job id=7032357838) has expired
[2026-02-28 22:45:38] 2026-02-28 21:45:19,884 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 22:45:38] 2026-02-28 21:45:19,884 | INFO     | will abort loop
[2026-02-28 22:45:38] 2026-02-28 21:45:19,916 | INFO     | [job] retrieve thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:19,916 | INFO     | [job] queue monitor thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:20,036 | INFO     | [payload] failed_post thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:20,131 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:20,131 | INFO     | [payload] control thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:20,222 | INFO     | [job] control thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:20,493 | INFO     | [payload] validate_post thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:20,614 | INFO     | [data] control thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:20,827 | INFO     | [job] validate thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:20,890 | INFO     | [job] job monitor thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:20,917 | INFO     | [data] copytool_out thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:20,970 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:21,016 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:21,141 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 22:45:38] 2026-02-28 21:45:21,237 | INFO     | [data] copytool_in thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:25,148 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:25,508 | INFO     | [monitor] cgroup control has ended
[2026-02-28 22:45:38] 2026-02-28 21:45:29,939 | INFO     | job.realtimelogging is not enabled
[2026-02-28 22:45:38] 2026-02-28 21:45:30,945 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 22:45:38] 2026-02-28 21:45:32,896 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139447850816)>', '<ExcThread(monitor, started 140138583672576)>']
[2026-02-28 22:45:38] 2026-02-28 21:45:32,985 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 22:45:38] 2026-02-28 21:45:32,986 | INFO     | [monitor] control thread has ended
[2026-02-28 22:45:38] 2026-02-28 21:45:37,922 | INFO     | all workflow threads have been joined
[2026-02-28 22:45:38] 2026-02-28 21:45:37,922 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 22:45:38] 2026-02-28 21:45:37,922 | INFO     | traces error code: 0
[2026-02-28 22:45:38] 2026-02-28 21:45:37,922 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 22:45:38] 2026-02-28 21:45:38,003 [wrapper] ==== pilot stdout END ====
[2026-02-28 22:45:38] 2026-02-28 21:45:38,007 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 22:45:38] 2026-02-28 21:45:38,011 [wrapper] pilotpid: 838563
[2026-02-28 22:45:38] 2026-02-28 21:45:38,015 [wrapper] Pilot exit status: 0
[2026-02-28 22:45:38] 2026-02-28 21:45:38,027 [wrapper] pandaids: 7032357838
[2026-02-28 22:45:38] 2026-02-28 21:45:38,051 [wrapper] cleanup supervisor_pilot  849213 838564
[2026-02-28 22:45:38] 2026-02-28 21:45:38,055 [wrapper] Test setup, not cleaning
[2026-02-28 22:45:38] 2026-02-28 21:45:38,060 [wrapper] apfmon messages muted
[2026-02-28 22:45:38] 2026-02-28 21:45:38,064 [wrapper] ==== wrapper stdout END ====
[2026-02-28 22:45:38] 2026-02-28 21:45:38,069 [wrapper] ==== wrapper stderr END ====
[2026-02-28 22:45:38]  *** Error codes and diagnostics ***
[2026-02-28 22:45:38]     "exeErrorCode": 0,
[2026-02-28 22:45:38]     "exeErrorDiag": "",
[2026-02-28 22:45:38]     "pilotErrorCode": 0,
[2026-02-28 22:45:38]     "pilotErrorDiag": "",
[2026-02-28 22:45:38]  *** Listing of results directory ***
[2026-02-28 22:45:38] total 506388
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc    584627 Feb 28 01:57 pilot3.tar.gz
[2026-02-28 22:45:38] -rwx------ 1 boinc boinc     36322 Feb 28 01:58 runpilot2-wrapper.sh
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc      5111 Feb 28 01:58 queuedata.json
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc       100 Feb 28 21:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 22:45:38] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 21:20 run_atlas
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc       105 Feb 28 21:20 job.xml
[2026-02-28 22:45:38] -rw-r--r-- 2 boinc boinc 288390781 Feb 28 21:20 EVNT.48220205._000074.pool.root.1
[2026-02-28 22:45:38] -rw-r--r-- 2 boinc boinc    597970 Feb 28 21:20 input.tar.gz
[2026-02-28 22:45:38] -rw-r--r-- 2 boinc boinc     15845 Feb 28 21:20 start_atlas.sh
[2026-02-28 22:45:38] drwxrwx--x 2 boinc boinc      4096 Feb 28 21:20 shared
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc         0 Feb 28 21:20 boinc_setup_complete
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc      6377 Feb 28 21:20 init_data.xml
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc         0 Feb 28 21:20 boinc_lockfile
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc      2587 Feb 28 21:20 pandaJob.out
[2026-02-28 22:45:38] -rw------- 1 boinc boinc    998790 Feb 28 21:20 agis_schedconf.cvmfs.json
[2026-02-28 22:45:38] -rw------- 1 boinc boinc   1513015 Feb 28 21:20 agis_ddmendpoints.agis.ALL.json
[2026-02-28 22:45:38] -rw------- 1 boinc boinc       426 Feb 28 21:20 workernode_map.json
[2026-02-28 22:45:38] drwx------ 5 boinc boinc      4096 Feb 28 21:20 pilot3
[2026-02-28 22:45:38] -rw------- 1 boinc boinc        95 Feb 28 22:44 pilot_heartbeat.json
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc       529 Feb 28 22:44 boinc_task_state.xml
[2026-02-28 22:45:38] -rw------- 1 boinc boinc 224191567 Feb 28 22:44 HITS.48838581._001576.pool.root.1
[2026-02-28 22:45:38] -rw------- 1 boinc boinc      1023 Feb 28 22:45 memory_monitor_summary.json
[2026-02-28 22:45:38] -rw------- 1 boinc boinc    275865 Feb 28 22:45 log.48838581._001576.job.log.tgz.1
[2026-02-28 22:45:38] -rw------- 1 boinc boinc      6312 Feb 28 22:45 heartbeat.json
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc        27 Feb 28 22:45 wrapper_checkpoint.txt
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc      8192 Feb 28 22:45 boinc_mmap_file
[2026-02-28 22:45:38] -rw------- 1 boinc boinc      5146 Feb 28 22:45 pilotlog.txt
[2026-02-28 22:45:38] -rw------- 1 boinc boinc    743883 Feb 28 22:45 log.48838581._001576.job.log.1
[2026-02-28 22:45:38] -rw------- 1 boinc boinc       357 Feb 28 22:45 output.list
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc       620 Feb 28 22:45 runtime_log
[2026-02-28 22:45:38] -rw------- 1 boinc boinc   1034240 Feb 28 22:45 result.tar.gz
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc      8896 Feb 28 22:45 runtime_log.err
[2026-02-28 22:45:38] -rw------- 1 boinc boinc       657 Feb 28 22:45 rflKDmspNG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmaM4KDmexhHim.diag
[2026-02-28 22:45:38] -rw-r--r-- 1 boinc boinc     12667 Feb 28 22:45 stderr.txt
[2026-02-28 22:45:38] HITS file was successfully produced:
[2026-02-28 22:45:38] -rw------- 1 boinc boinc 224191567 Feb 28 22:44 shared/HITS.pool.root.1
[2026-02-28 22:45:38]  *** Contents of shared directory: ***
[2026-02-28 22:45:38] total 502192
[2026-02-28 22:45:38] -rw-r--r-- 2 boinc boinc 288390781 Feb 28 21:20 ATLAS.root_0
[2026-02-28 22:45:38] -rw-r--r-- 2 boinc boinc    597970 Feb 28 21:20 input.tar.gz
[2026-02-28 22:45:38] -rw-r--r-- 2 boinc boinc     15845 Feb 28 21:20 start_atlas.sh
[2026-02-28 22:45:38] -rw------- 1 boinc boinc 224191567 Feb 28 22:44 HITS.pool.root.1
[2026-02-28 22:45:38] -rw------- 1 boinc boinc   1034240 Feb 28 22:45 result.tar.gz
22:45:40 (834449): run_atlas exited; CPU time 19347.850369
22:45:40 (834449): called boinc_finish(0)

</stderr_txt>
]]>

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