Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:42:59 (3230960): wrapper (7.7.26015): starting
21:42:59 (3230960): wrapper: running run_atlas (--nthreads 3)
[2026-02-28 21:42:59] Arguments: --nthreads 3
[2026-02-28 21:42:59] Threads: 3
[2026-02-28 21:42:59] Checking for CVMFS
[2026-02-28 21:42:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 21:42:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 21:42:59] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 21:42:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 21:42:59] 2.9.2.0 2609103 4729 82104 156744 1 50 23996481 36864001 0 130560 0 1774475 99.980 186790 16454 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 21:42:59] CVMFS is ok
[2026-02-28 21:42:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 21:42:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 21:42:59] Further information can be found at the LHC@home message board.
[2026-02-28 21:42:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 21:42:59] Checking for apptainer binary...
[2026-02-28 21:42:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 21:42:59] Running /usr/bin/apptainer --version
[2026-02-28 21:42:59] apptainer version 1.4.1-1.1
[2026-02-28 21:42:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 21:42:59] thA331b
[2026-02-28 21:42:59] apptainer works
[2026-02-28 21:42:59] Set ATHENA_PROC_NUMBER=3
[2026-02-28 21:42:59] Set ATHENA_CORE_NUMBER=3
[2026-02-28 21:42:59] Starting ATLAS job with PandaID=7031069189
[2026-02-28 21:42:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 01:26:29]  *** The last 200 lines of the pilot log: ***
[2026-03-01 01:26:29] 2026-03-01 00:25:49,580 | INFO     | collected zombie processes
[2026-03-01 01:26:29] 2026-03-01 00:25:49,580 | INFO     | will attempt to kill all subprocesses of pid=3239427
[2026-03-01 01:26:29] 2026-03-01 00:25:49,622 | INFO     | process IDs to be killed: [3239427] (in reverse order)
[2026-03-01 01:26:29] 2026-03-01 00:25:49,646 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 01:26:29] 2026-03-01 00:25:49,646 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 01:26:29] 2026-03-01 00:25:49,647 | INFO     | did not find any defunct processes belonging to 3239427
[2026-03-01 01:26:29] 2026-03-01 00:25:49,648 | INFO     | did not find any defunct processes belonging to 3239427
[2026-03-01 01:26:29] 2026-03-01 00:25:49,649 | INFO     | ready for new job
[2026-03-01 01:26:29] 2026-03-01 00:25:49,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 01:26:29] 2026-03-01 00:25:49,650 | INFO     | **************************************
[2026-03-01 01:26:29] 2026-03-01 00:25:49,650 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 01:26:29] 2026-03-01 00:25:49,650 | INFO     | **************************************
[2026-03-01 01:26:29] 2026-03-01 00:25:49,650 | INFO     | 
[2026-03-01 01:26:29] 2026-03-01 00:25:49,650 | INFO     | architecture information:
[2026-03-01 01:26:29] 2026-03-01 00:25:49,650 | INFO     | executing command: cat /etc/os-release
[2026-03-01 01:26:29] 2026-03-01 00:25:49,659 | INFO     | cat /etc/os-release:
[2026-03-01 01:26:29] NAME="CentOS Linux"
[2026-03-01 01:26:29] VERSION="7 (Core)"
[2026-03-01 01:26:29] ID="centos"
[2026-03-01 01:26:29] ID_LIKE="rhel fedora"
[2026-03-01 01:26:29] VERSION_ID="7"
[2026-03-01 01:26:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 01:26:29] ANSI_COLOR="0;31"
[2026-03-01 01:26:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 01:26:29] HOME_URL="https://www.centos.org/"
[2026-03-01 01:26:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 01:26:29] 
[2026-03-01 01:26:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 01:26:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 01:26:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 01:26:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 01:26:29] 
[2026-03-01 01:26:29] 2026-03-01 00:25:49,659 | INFO     | **************************************
[2026-03-01 01:26:29] 2026-03-01 00:25:50,162 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 01:26:29] 2026-03-01 00:25:50,175 | INFO     | sufficient remaining disk space (235077107712 B)
[2026-03-01 01:26:29] 2026-03-01 00:25:50,175 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 01:26:29] 2026-03-01 00:25:50,175 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 01:26:29] 2026-03-01 00:25:50,175 | INFO     | update_server=False
[2026-03-01 01:26:29] 2026-03-01 00:25:50,175 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 01:26:29] 2026-03-01 00:25:50,175 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-01 01:26:29] 2026-03-01 00:25:50,176 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 01:26:29] 2026-03-01 00:25:50,176 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 01:26:29] 2026-03-01 00:25:50,176 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 01:26:29] 2026-03-01 00:25:50,176 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 01:26:29] 2026-03-01 00:25:50,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 01:26:29] 2026-03-01 00:25:50,176 | INFO     | aborting loop
[2026-03-01 01:26:29] 2026-03-01 00:25:50,594 | INFO     | all data control threads have been joined
[2026-03-01 01:26:29] 2026-03-01 00:25:50,669 | INFO     | all payload control threads have been joined
[2026-03-01 01:26:29] 2026-03-01 00:25:51,181 | INFO     | [job] retrieve thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:51,181 | INFO     | [job] queue monitor thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:51,182 | INFO     | [job] job monitor thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:51,204 | INFO     | [payload] failed_post thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:51,400 | INFO     | [data] copytool_in thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:51,507 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 01:26:29] 2026-03-01 00:25:51,600 | INFO     | [data] control thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:51,601 | INFO     | all job control threads have been joined
[2026-03-01 01:26:29] 2026-03-01 00:25:51,675 | INFO     | [payload] control thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:51,718 | INFO     | [payload] validate_post thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:52,139 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:52,523 | INFO     | [job] validate thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:52,562 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:52,574 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:52,606 | INFO     | [job] control thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:52,624 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 01:26:29] 2026-03-01 00:25:53,514 | INFO     | [data] copytool_out thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:25:56,631 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:26:00,626 | INFO     | job.realtimelogging is not enabled
[2026-03-01 01:26:29] 2026-03-01 00:26:01,632 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 01:26:29] 2026-03-01 00:26:23,802 | INFO     | [monitor] cgroup control has ended
[2026-03-01 01:26:29] 2026-03-01 00:26:24,768 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140028873631552)>', '<ExcThread(monitor, started 140028525135616)>']
[2026-03-01 01:26:29] 2026-03-01 00:26:25,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 01:26:29] 2026-03-01 00:26:25,359 | INFO     | [monitor] control thread has ended
[2026-03-01 01:26:29] 2026-03-01 00:26:29,794 | INFO     | all workflow threads have been joined
[2026-03-01 01:26:29] 2026-03-01 00:26:29,794 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 01:26:29] 2026-03-01 00:26:29,795 | INFO     | traces error code: 0
[2026-03-01 01:26:29] 2026-03-01 00:26:29,795 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 01:26:29] 2026-03-01 00:26:29,846 [wrapper] ==== pilot stdout END ====
[2026-03-01 01:26:29] 2026-03-01 00:26:29,849 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 01:26:29] 2026-03-01 00:26:29,851 [wrapper] pilotpid: 3234996
[2026-03-01 01:26:29] 2026-03-01 00:26:29,853 [wrapper] Pilot exit status: 0
[2026-03-01 01:26:29] 2026-03-01 00:26:29,860 [wrapper] pandaids: 7031069189
[2026-03-01 01:26:29] 2026-03-01 00:26:29,876 [wrapper] cleanup supervisor_pilot 3246368 3234997
[2026-03-01 01:26:29] 2026-03-01 00:26:29,878 [wrapper] Test setup, not cleaning
[2026-03-01 01:26:29] 2026-03-01 00:26:29,881 [wrapper] apfmon messages muted
[2026-03-01 01:26:29] 2026-03-01 00:26:29,883 [wrapper] ==== wrapper stdout END ====
[2026-03-01 01:26:29] 2026-03-01 00:26:29,885 [wrapper] ==== wrapper stderr END ====
[2026-03-01 01:26:29]  *** Error codes and diagnostics ***
[2026-03-01 01:26:29]     "exeErrorCode": 0,
[2026-03-01 01:26:29]     "exeErrorDiag": "",
[2026-03-01 01:26:29]     "pilotErrorCode": 0,
[2026-03-01 01:26:29]     "pilotErrorDiag": "",
[2026-03-01 01:26:29]  *** Listing of results directory ***
[2026-03-01 01:26:29] total 646060
[2026-03-01 01:26:29] -rwx------ 1 boinc boinc     36322 Feb 26 22:49 runpilot2-wrapper.sh
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc    584627 Feb 26 22:50 pilot3.tar.gz
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc      5111 Feb 26 22:50 queuedata.json
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc       100 Feb 28 21:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 01:26:29] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 21:42 run_atlas
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc       105 Feb 28 21:42 job.xml
[2026-03-01 01:26:29] -rw-r--r-- 2 boinc boinc 313934399 Feb 28 21:42 EVNT.48448560._000001.pool.root.1
[2026-03-01 01:26:29] -rw-r--r-- 2 boinc boinc    597969 Feb 28 21:42 input.tar.gz
[2026-03-01 01:26:29] -rw-r--r-- 2 boinc boinc     15845 Feb 28 21:42 start_atlas.sh
[2026-03-01 01:26:29] drwxrwx--x 2 boinc boinc      4096 Feb 28 21:42 shared
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc         0 Feb 28 21:42 boinc_setup_complete
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc      6441 Feb 28 21:42 init_data.xml
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc         0 Feb 28 21:42 boinc_lockfile
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc      2610 Feb 28 21:42 pandaJob.out
[2026-03-01 01:26:29] -rw------- 1 boinc boinc    998790 Feb 28 21:43 agis_schedconf.cvmfs.json
[2026-03-01 01:26:29] -rw------- 1 boinc boinc       419 Feb 28 21:43 workernode_map.json
[2026-03-01 01:26:29] drwx------ 5 boinc boinc      4096 Feb 28 21:43 pilot3
[2026-03-01 01:26:29] -rw------- 1 boinc boinc        95 Mar  1 01:25 pilot_heartbeat.json
[2026-03-01 01:26:29] -rw------- 1 boinc boinc 339177275 Mar  1 01:25 HITS.48842546._000023.pool.root.1
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc       530 Mar  1 01:25 boinc_task_state.xml
[2026-03-01 01:26:29] -rw------- 1 boinc boinc      1020 Mar  1 01:25 memory_monitor_summary.json
[2026-03-01 01:26:29] -rw------- 1 boinc boinc   1513015 Mar  1 01:25 agis_ddmendpoints.agis.ALL.json
[2026-03-01 01:26:29] -rw------- 1 boinc boinc    385729 Mar  1 01:25 log.48842546._000023.job.log.tgz.1
[2026-03-01 01:26:29] -rw------- 1 boinc boinc      6295 Mar  1 01:25 heartbeat.json
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc      8192 Mar  1 01:26 boinc_mmap_file
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc        28 Mar  1 01:26 wrapper_checkpoint.txt
[2026-03-01 01:26:29] -rw------- 1 boinc boinc      4624 Mar  1 01:26 pilotlog.txt
[2026-03-01 01:26:29] -rw------- 1 boinc boinc   1884103 Mar  1 01:26 log.48842546._000023.job.log.1
[2026-03-01 01:26:29] -rw------- 1 boinc boinc       357 Mar  1 01:26 output.list
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc       620 Mar  1 01:26 runtime_log
[2026-03-01 01:26:29] -rw------- 1 boinc boinc   2283520 Mar  1 01:26 result.tar.gz
[2026-03-01 01:26:29] -rw------- 1 boinc boinc       661 Mar  1 01:26 sFdMDmSPyF9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmHr3KDmbfLkRo.diag
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc      8902 Mar  1 01:26 runtime_log.err
[2026-03-01 01:26:29] -rw-r--r-- 1 boinc boinc     10296 Mar  1 01:26 stderr.txt
[2026-03-01 01:26:29] HITS file was successfully produced:
[2026-03-01 01:26:29] -rw------- 1 boinc boinc 339177275 Mar  1 01:25 shared/HITS.pool.root.1
[2026-03-01 01:26:29]  *** Contents of shared directory: ***
[2026-03-01 01:26:29] total 640648
[2026-03-01 01:26:29] -rw-r--r-- 2 boinc boinc 313934399 Feb 28 21:42 ATLAS.root_0
[2026-03-01 01:26:29] -rw-r--r-- 2 boinc boinc    597969 Feb 28 21:42 input.tar.gz
[2026-03-01 01:26:29] -rw-r--r-- 2 boinc boinc     15845 Feb 28 21:42 start_atlas.sh
[2026-03-01 01:26:29] -rw------- 1 boinc boinc 339177275 Mar  1 01:25 HITS.pool.root.1
[2026-03-01 01:26:29] -rw------- 1 boinc boinc   2283520 Mar  1 01:26 result.tar.gz
01:26:31 (3230960): run_atlas exited; CPU time 39231.604321
01:26:31 (3230960): called boinc_finish(0)

</stderr_txt>
]]>

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