Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:29:32 (850164): wrapper (7.7.26015): starting
16:29:32 (850164): wrapper: running run_atlas (--nthreads 3)
[2026-03-01 16:29:32] Arguments: --nthreads 3
[2026-03-01 16:29:32] Threads: 3
[2026-03-01 16:29:32] Checking for CVMFS
[2026-03-01 16:29:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-01 16:29:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-01 16:29:33] Running cvmfs_config stat atlas.cern.ch
[2026-03-01 16:29:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-01 16:29:33] 2.9.2.0 77542 5784 83736 156774 0 49 22966209 36864001 0 130560 0 2022791 99.978 234912 17482 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-01 16:29:33] CVMFS is ok
[2026-03-01 16:29:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-01 16:29:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-01 16:29:33] Further information can be found at the LHC@home message board.
[2026-03-01 16:29:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-01 16:29:33] Checking for apptainer binary...
[2026-03-01 16:29:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-01 16:29:33] Running /usr/bin/apptainer --version
[2026-03-01 16:29:33] apptainer version 1.4.1-1.1
[2026-03-01 16:29:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-01 16:29:33] thA312
[2026-03-01 16:29:33] apptainer works
[2026-03-01 16:29:33] Set ATHENA_PROC_NUMBER=3
[2026-03-01 16:29:33] Set ATHENA_CORE_NUMBER=3
[2026-03-01 16:29:33] Starting ATLAS job with PandaID=7032232309
[2026-03-01 16:29:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-01 18:05:09]  *** The last 200 lines of the pilot log: ***
[2026-03-01 18:05:09] 2026-03-01 17:04:36,941 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-01 18:05:09] 2026-03-01 17:04:36,941 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-01 18:05:09] 2026-03-01 17:04:36,941 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-01 18:05:09] 2026-03-01 17:04:36,941 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-01 18:05:09] 2026-03-01 17:04:36,941 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-01 18:05:09] 2026-03-01 17:04:36,941 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-01 18:05:09] 2026-03-01 17:04:36,941 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-01 18:05:09] 2026-03-01 17:04:36,941 | INFO     | job 7032232309 has completed (purged errors)
[2026-03-01 18:05:09] 2026-03-01 17:04:36,941 | INFO     | overall cleanup function is called
[2026-03-01 18:05:09] 2026-03-01 17:04:37,943 | INFO     | --- collectZombieJob: --- 10, [858624]
[2026-03-01 18:05:09] 2026-03-01 17:04:37,943 | INFO     | zombie collector waiting for pid 858624
[2026-03-01 18:05:09] 2026-03-01 17:04:37,944 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-01 18:05:09] 2026-03-01 17:04:37,944 | INFO     | collected zombie processes
[2026-03-01 18:05:09] 2026-03-01 17:04:37,944 | INFO     | will attempt to kill all subprocesses of pid=858624
[2026-03-01 18:05:09] 2026-03-01 17:04:37,992 | INFO     | process IDs to be killed: [858624] (in reverse order)
[2026-03-01 18:05:09] 2026-03-01 17:04:38,018 | WARNING  | found no corresponding commands to process id(s)
[2026-03-01 18:05:09] 2026-03-01 17:04:38,018 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-01 18:05:09] 2026-03-01 17:04:38,020 | INFO     | did not find any defunct processes belonging to 858624
[2026-03-01 18:05:09] 2026-03-01 17:04:38,021 | INFO     | did not find any defunct processes belonging to 858624
[2026-03-01 18:05:09] 2026-03-01 17:04:38,021 | INFO     | ready for new job
[2026-03-01 18:05:09] 2026-03-01 17:04:38,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-01 18:05:09] 2026-03-01 17:04:38,022 | INFO     | **************************************
[2026-03-01 18:05:09] 2026-03-01 17:04:38,022 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-01 18:05:09] 2026-03-01 17:04:38,022 | INFO     | **************************************
[2026-03-01 18:05:09] 2026-03-01 17:04:38,022 | INFO     | 
[2026-03-01 18:05:09] 2026-03-01 17:04:38,022 | INFO     | architecture information:
[2026-03-01 18:05:09] 2026-03-01 17:04:38,022 | INFO     | executing command: cat /etc/os-release
[2026-03-01 18:05:09] 2026-03-01 17:04:38,031 | INFO     | cat /etc/os-release:
[2026-03-01 18:05:09] NAME="CentOS Linux"
[2026-03-01 18:05:09] VERSION="7 (Core)"
[2026-03-01 18:05:09] ID="centos"
[2026-03-01 18:05:09] ID_LIKE="rhel fedora"
[2026-03-01 18:05:09] VERSION_ID="7"
[2026-03-01 18:05:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-01 18:05:09] ANSI_COLOR="0;31"
[2026-03-01 18:05:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-01 18:05:09] HOME_URL="https://www.centos.org/"
[2026-03-01 18:05:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-01 18:05:09] 
[2026-03-01 18:05:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-01 18:05:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-01 18:05:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-01 18:05:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-01 18:05:09] 
[2026-03-01 18:05:09] 2026-03-01 17:04:38,031 | INFO     | **************************************
[2026-03-01 18:05:09] 2026-03-01 17:04:38,534 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-01 18:05:09] 2026-03-01 17:04:38,548 | INFO     | sufficient remaining disk space (334439120896 B)
[2026-03-01 18:05:09] 2026-03-01 17:04:38,548 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-01 18:05:09] 2026-03-01 17:04:38,548 | INFO     | current server update state: UPDATING_FINAL
[2026-03-01 18:05:09] 2026-03-01 17:04:38,548 | INFO     | update_server=False
[2026-03-01 18:05:09] 2026-03-01 17:04:38,548 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-01 18:05:09] 2026-03-01 17:04:38,548 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-01 18:05:09] 2026-03-01 17:04:38,548 | INFO     | aborting loop
[2026-03-01 18:05:09] 2026-03-01 17:04:38,548 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-01 18:05:09] 2026-03-01 17:04:38,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-01 18:05:09] 2026-03-01 17:04:38,606 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-01 18:05:09] 2026-03-01 17:04:38,703 | INFO     | all payload control threads have been joined
[2026-03-01 18:05:09] 2026-03-01 17:04:39,085 | INFO     | all data control threads have been joined
[2026-03-01 18:05:09] 2026-03-01 17:04:39,554 | INFO     | [job] retrieve thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:39,554 | INFO     | [job] job monitor thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:39,554 | INFO     | [job] queue monitor thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:39,709 | INFO     | [payload] control thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:39,976 | INFO     | [payload] validate_post thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:40,001 | INFO     | all job control threads have been joined
[2026-03-01 18:05:09] 2026-03-01 17:04:40,091 | INFO     | [data] control thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:40,229 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:40,612 | INFO     | [data] copytool_out thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:40,624 | INFO     | [job] create_data_payload thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:40,653 | INFO     | [job] validate thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:40,703 | INFO     | [payload] validate_pre thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:40,704 | INFO     | [payload] execute_payloads thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:40,843 | INFO     | [data] copytool_in thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:41,007 | INFO     | [job] control thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:41,066 | INFO     | [payload] failed_post thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:42,555 | INFO     | [data] queue_monitor thread has finished
[2026-03-01 18:05:09] 2026-03-01 17:04:49,965 | INFO     | [monitor] cgroup control has ended
[2026-03-01 18:05:09] 2026-03-01 17:04:51,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140289287071552)>', '<ExcThread(monitor, started 140288127399680)>']
[2026-03-01 18:05:09] 2026-03-01 17:04:56,152 | INFO     | all workflow threads have been joined
[2026-03-01 18:05:09] 2026-03-01 17:04:56,152 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-01 18:05:09] 2026-03-01 17:04:56,152 | INFO     | traces error code: 0
[2026-03-01 18:05:09] 2026-03-01 17:04:56,152 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-01 18:05:09] 2026-03-01 17:05:09,340 | INFO     | PID=854201 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-01 18:05:09] 2026-03-01 17:05:09,340 | INFO     | found 0 job(s) in 20 queues
[2026-03-01 18:05:09] 2026-03-01 17:05:09,340 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-01 18:05:09] 2026-03-01 17:05:09,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-01 18:05:09] 2026-03-01 17:05:09,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-01 18:05:09] 2026-03-01 17:05:09,340 | INFO     | [monitor] control thread has ended
[2026-03-01 18:05:09] 2026-03-01 17:05:09,386 [wrapper] ==== pilot stdout END ====
[2026-03-01 18:05:09] 2026-03-01 17:05:09,388 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-01 18:05:09] 2026-03-01 17:05:09,390 [wrapper] pilotpid: 854201
[2026-03-01 18:05:09] 2026-03-01 17:05:09,393 [wrapper] Pilot exit status: 0
[2026-03-01 18:05:09] 2026-03-01 17:05:09,400 [wrapper] pandaids: 7032232309
[2026-03-01 18:05:09] 2026-03-01 17:05:09,417 [wrapper] cleanup supervisor_pilot  864937 854202
[2026-03-01 18:05:09] 2026-03-01 17:05:09,419 [wrapper] Test setup, not cleaning
[2026-03-01 18:05:09] 2026-03-01 17:05:09,422 [wrapper] apfmon messages muted
[2026-03-01 18:05:09] 2026-03-01 17:05:09,424 [wrapper] ==== wrapper stdout END ====
[2026-03-01 18:05:09] 2026-03-01 17:05:09,426 [wrapper] ==== wrapper stderr END ====
[2026-03-01 18:05:09]  *** Error codes and diagnostics ***
[2026-03-01 18:05:09]     "exeErrorCode": 0,
[2026-03-01 18:05:09]     "exeErrorDiag": "",
[2026-03-01 18:05:09]     "pilotErrorCode": 0,
[2026-03-01 18:05:09]     "pilotErrorDiag": "",
[2026-03-01 18:05:09]  *** Listing of results directory ***
[2026-03-01 18:05:09] total 470624
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc    584627 Feb 27 23:54 pilot3.tar.gz
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc      5111 Feb 27 23:55 queuedata.json
[2026-03-01 18:05:09] -rwx------ 1 boinc boinc     36322 Feb 27 23:56 runpilot2-wrapper.sh
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc       100 Mar  1 16:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-01 18:05:09] -rwxr-xr-x 1 boinc boinc      7986 Mar  1 16:29 run_atlas
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc       105 Mar  1 16:29 job.xml
[2026-03-01 18:05:09] -rw-r--r-- 2 boinc boinc 270737374 Mar  1 16:29 EVNT.48343789._000087.pool.root.1
[2026-03-01 18:05:09] -rw-r--r-- 2 boinc boinc    597968 Mar  1 16:29 input.tar.gz
[2026-03-01 18:05:09] -rw-r--r-- 2 boinc boinc     15845 Mar  1 16:29 start_atlas.sh
[2026-03-01 18:05:09] drwxrwx--x 2 boinc boinc      4096 Mar  1 16:29 shared
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc         0 Mar  1 16:29 boinc_setup_complete
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc      6439 Mar  1 16:29 init_data.xml
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc         0 Mar  1 16:29 boinc_lockfile
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc      2567 Mar  1 16:29 pandaJob.out
[2026-03-01 18:05:09] -rw------- 1 boinc boinc    998184 Mar  1 16:29 agis_schedconf.cvmfs.json
[2026-03-01 18:05:09] -rw------- 1 boinc boinc   1513015 Mar  1 16:29 agis_ddmendpoints.agis.ALL.json
[2026-03-01 18:05:09] -rw------- 1 boinc boinc       418 Mar  1 16:29 workernode_map.json
[2026-03-01 18:05:09] drwx------ 5 boinc boinc      4096 Mar  1 16:29 pilot3
[2026-03-01 18:05:09] -rw------- 1 boinc boinc        95 Mar  1 18:04 pilot_heartbeat.json
[2026-03-01 18:05:09] -rw------- 1 boinc boinc 205098820 Mar  1 18:04 HITS.48838615._002188.pool.root.1
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc       529 Mar  1 18:04 boinc_task_state.xml
[2026-03-01 18:05:09] -rw------- 1 boinc boinc      1020 Mar  1 18:04 memory_monitor_summary.json
[2026-03-01 18:05:09] -rw------- 1 boinc boinc    263918 Mar  1 18:04 log.48838615._002188.job.log.tgz.1
[2026-03-01 18:05:09] -rw------- 1 boinc boinc      6302 Mar  1 18:04 heartbeat.json
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc        27 Mar  1 18:04 wrapper_checkpoint.txt
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc      8192 Mar  1 18:04 boinc_mmap_file
[2026-03-01 18:05:09] -rw------- 1 boinc boinc       746 Mar  1 18:05 pilotlog.txt
[2026-03-01 18:05:09] -rw------- 1 boinc boinc    826763 Mar  1 18:05 log.48838615._002188.job.log.1
[2026-03-01 18:05:09] -rw------- 1 boinc boinc       357 Mar  1 18:05 output.list
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc       620 Mar  1 18:05 runtime_log
[2026-03-01 18:05:09] -rw------- 1 boinc boinc   1105920 Mar  1 18:05 result.tar.gz
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc      8896 Mar  1 18:05 runtime_log.err
[2026-03-01 18:05:09] -rw------- 1 boinc boinc       657 Mar  1 18:05 rLVNDmzvLG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmX93KDmP8Lsnm.diag
[2026-03-01 18:05:09] -rw-r--r-- 1 boinc boinc     11506 Mar  1 18:05 stderr.txt
[2026-03-01 18:05:09] HITS file was successfully produced:
[2026-03-01 18:05:09] -rw------- 1 boinc boinc 205098820 Mar  1 18:04 shared/HITS.pool.root.1
[2026-03-01 18:05:09]  *** Contents of shared directory: ***
[2026-03-01 18:05:09] total 466368
[2026-03-01 18:05:09] -rw-r--r-- 2 boinc boinc 270737374 Mar  1 16:29 ATLAS.root_0
[2026-03-01 18:05:09] -rw-r--r-- 2 boinc boinc    597968 Mar  1 16:29 input.tar.gz
[2026-03-01 18:05:09] -rw-r--r-- 2 boinc boinc     15845 Mar  1 16:29 start_atlas.sh
[2026-03-01 18:05:09] -rw------- 1 boinc boinc 205098820 Mar  1 18:04 HITS.pool.root.1
[2026-03-01 18:05:09] -rw------- 1 boinc boinc   1105920 Mar  1 18:05 result.tar.gz
18:05:30 (850164): run_atlas exited; CPU time 16423.209962
18:05:30 (850164): called boinc_finish(0)

</stderr_txt>
]]>

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