Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:27:23 (463080): wrapper (7.7.26015): starting
19:27:23 (463080): wrapper: running run_atlas (--nthreads 4)
[2026-02-28 19:27:23] Arguments: --nthreads 4
[2026-02-28 19:27:23] Threads: 4
[2026-02-28 19:27:23] Checking for CVMFS
[2026-02-28 19:27:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 19:27:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 19:27:24] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 19:27:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 19:27:24] 2.9.2.0 3074 2942 93132 156741 1 49 26929098 36864001 0 130560 0 1204033 99.981 118529 13101 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 19:27:24] CVMFS is ok
[2026-02-28 19:27:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 19:27:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 19:27:24] Further information can be found at the LHC@home message board.
[2026-02-28 19:27:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 19:27:24] Checking for apptainer binary...
[2026-02-28 19:27:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 19:27:24] Running /usr/bin/apptainer --version
[2026-02-28 19:27:24] apptainer version 1.4.1-1.1
[2026-02-28 19:27:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 19:27:24] thA314
[2026-02-28 19:27:24] apptainer works
[2026-02-28 19:27:24] Set ATHENA_PROC_NUMBER=4
[2026-02-28 19:27:24] Set ATHENA_CORE_NUMBER=4
[2026-02-28 19:27:24] Starting ATLAS job with PandaID=7031686670
[2026-02-28 19:27:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 20:51:06]  *** The last 200 lines of the pilot log: ***
[2026-02-28 20:51:06] 2026-02-28 19:50:35,401 | INFO     | zombie collector waiting for pid 471742
[2026-02-28 20:51:06] 2026-02-28 19:50:35,401 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 20:51:06] 2026-02-28 19:50:35,401 | INFO     | collected zombie processes
[2026-02-28 20:51:06] 2026-02-28 19:50:35,401 | INFO     | will attempt to kill all subprocesses of pid=471742
[2026-02-28 20:51:06] 2026-02-28 19:50:35,447 | INFO     | process IDs to be killed: [471742] (in reverse order)
[2026-02-28 20:51:06] 2026-02-28 19:50:35,480 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 20:51:06] 2026-02-28 19:50:35,481 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 20:51:06] 2026-02-28 19:50:35,482 | INFO     | did not find any defunct processes belonging to 471742
[2026-02-28 20:51:06] 2026-02-28 19:50:35,484 | INFO     | did not find any defunct processes belonging to 471742
[2026-02-28 20:51:06] 2026-02-28 19:50:35,484 | INFO     | ready for new job
[2026-02-28 20:51:06] 2026-02-28 19:50:35,484 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 20:51:06] 2026-02-28 19:50:35,484 | INFO     | **************************************
[2026-02-28 20:51:06] 2026-02-28 19:50:35,485 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 20:51:06] 2026-02-28 19:50:35,485 | INFO     | **************************************
[2026-02-28 20:51:06] 2026-02-28 19:50:35,485 | INFO     | 
[2026-02-28 20:51:06] 2026-02-28 19:50:35,485 | INFO     | architecture information:
[2026-02-28 20:51:06] 2026-02-28 19:50:35,485 | INFO     | executing command: cat /etc/os-release
[2026-02-28 20:51:06] 2026-02-28 19:50:35,499 | INFO     | cat /etc/os-release:
[2026-02-28 20:51:06] NAME="CentOS Linux"
[2026-02-28 20:51:06] VERSION="7 (Core)"
[2026-02-28 20:51:06] ID="centos"
[2026-02-28 20:51:06] ID_LIKE="rhel fedora"
[2026-02-28 20:51:06] VERSION_ID="7"
[2026-02-28 20:51:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 20:51:06] ANSI_COLOR="0;31"
[2026-02-28 20:51:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 20:51:06] HOME_URL="https://www.centos.org/"
[2026-02-28 20:51:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 20:51:06] 
[2026-02-28 20:51:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 20:51:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 20:51:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 20:51:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 20:51:06] 
[2026-02-28 20:51:06] 2026-02-28 19:50:35,499 | INFO     | **************************************
[2026-02-28 20:51:06] 2026-02-28 19:50:35,817 | WARNING  | process 471742 can no longer be monitored (due to stat problems) - aborting
[2026-02-28 20:51:06] 2026-02-28 19:50:35,850 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 20:51:06] 2026-02-28 19:50:35,891 | INFO     | number of running child processes to parent process 471742: 1
[2026-02-28 20:51:06] 2026-02-28 19:50:35,891 | INFO     | maximum number of monitored processes: 6
[2026-02-28 20:51:06] 2026-02-28 19:50:35,891 | INFO     | aborting job monitoring since job object (job id=7031686670) has expired
[2026-02-28 20:51:06] 2026-02-28 19:50:36,002 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 20:51:06] 2026-02-28 19:50:36,020 | INFO     | sufficient remaining disk space (230840860672 B)
[2026-02-28 20:51:06] 2026-02-28 19:50:36,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 20:51:06] 2026-02-28 19:50:36,020 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 20:51:06] 2026-02-28 19:50:36,020 | INFO     | update_server=False
[2026-02-28 20:51:06] 2026-02-28 19:50:36,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 20:51:06] 2026-02-28 19:50:36,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 20:51:06] 2026-02-28 19:50:36,021 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 20:51:06] 2026-02-28 19:50:36,021 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 20:51:06] 2026-02-28 19:50:36,021 | INFO     | will abort loop
[2026-02-28 20:51:06] 2026-02-28 19:50:36,021 | INFO     | all data control threads have been joined
[2026-02-28 20:51:06] 2026-02-28 19:50:36,994 | INFO     | all job control threads have been joined
[2026-02-28 20:51:06] 2026-02-28 19:50:37,026 | INFO     | [job] retrieve thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:37,026 | INFO     | [job] job monitor thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:37,027 | INFO     | [data] control thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:37,068 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:37,134 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:37,253 | INFO     | all payload control threads have been joined
[2026-02-28 20:51:06] 2026-02-28 19:50:37,264 | INFO     | [data] copytool_in thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:37,300 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:37,596 | INFO     | [payload] failed_post thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:38,000 | INFO     | [job] control thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:38,027 | INFO     | [data] copytool_out thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:38,116 | INFO     | [payload] validate_post thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:38,259 | INFO     | [payload] control thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:38,382 | INFO     | [job] validate thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:38,907 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 20:51:06] 2026-02-28 19:50:39,912 | INFO     | [job] queue monitor thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:40,026 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:41,125 | INFO     | [monitor] cgroup control has ended
[2026-02-28 20:51:06] 2026-02-28 19:50:46,928 | INFO     | job.realtimelogging is not enabled
[2026-02-28 20:51:06] 2026-02-28 19:50:47,934 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 20:51:06] 2026-02-28 19:50:48,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269514606400)>', '<ExcThread(monitor, started 140268716152576)>']
[2026-02-28 20:51:06] 2026-02-28 19:50:53,513 | INFO     | all workflow threads have been joined
[2026-02-28 20:51:06] 2026-02-28 19:50:53,514 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 20:51:06] 2026-02-28 19:50:53,514 | INFO     | traces error code: 0
[2026-02-28 20:51:06] 2026-02-28 19:50:53,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 20:51:06] 2026-02-28 19:51:06,452 | INFO     | PID=467194 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 20:51:06] 2026-02-28 19:51:06,453 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 20:51:06] 2026-02-28 19:51:06,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 20:51:06] 2026-02-28 19:51:06,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 20:51:06] 2026-02-28 19:51:06,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 20:51:06] 2026-02-28 19:51:06,453 | INFO     | [monitor] control thread has ended
[2026-02-28 20:51:06] 2026-02-28 19:51:06,527 [wrapper] ==== pilot stdout END ====
[2026-02-28 20:51:06] 2026-02-28 19:51:06,531 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 20:51:06] 2026-02-28 19:51:06,535 [wrapper] pilotpid: 467194
[2026-02-28 20:51:06] 2026-02-28 19:51:06,539 [wrapper] Pilot exit status: 0
[2026-02-28 20:51:06] 2026-02-28 19:51:06,550 [wrapper] pandaids: 7031686670
[2026-02-28 20:51:06] 2026-02-28 19:51:06,571 [wrapper] cleanup supervisor_pilot  478112 467195
[2026-02-28 20:51:06] 2026-02-28 19:51:06,575 [wrapper] Test setup, not cleaning
[2026-02-28 20:51:06] 2026-02-28 19:51:06,579 [wrapper] apfmon messages muted
[2026-02-28 20:51:06] 2026-02-28 19:51:06,582 [wrapper] ==== wrapper stdout END ====
[2026-02-28 20:51:06] 2026-02-28 19:51:06,586 [wrapper] ==== wrapper stderr END ====
[2026-02-28 20:51:06]  *** Error codes and diagnostics ***
[2026-02-28 20:51:06]     "exeErrorCode": 0,
[2026-02-28 20:51:06]     "exeErrorDiag": "",
[2026-02-28 20:51:06]     "pilotErrorCode": 0,
[2026-02-28 20:51:06]     "pilotErrorDiag": "",
[2026-02-28 20:51:06]  *** Listing of results directory ***
[2026-02-28 20:51:06] total 482136
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc    584627 Feb 27 17:20 pilot3.tar.gz
[2026-02-28 20:51:06] -rwx------ 1 boinc boinc     36322 Feb 27 17:23 runpilot2-wrapper.sh
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc      5111 Feb 27 17:25 queuedata.json
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc       100 Feb 28 19:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 20:51:06] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 19:27 run_atlas
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc       105 Feb 28 19:27 job.xml
[2026-02-28 20:51:06] -rw-r--r-- 2 boinc boinc 275722234 Feb 28 19:27 EVNT.48220133._000073.pool.root.1
[2026-02-28 20:51:06] -rw-r--r-- 2 boinc boinc    597968 Feb 28 19:27 input.tar.gz
[2026-02-28 20:51:06] -rw-r--r-- 2 boinc boinc     15845 Feb 28 19:27 start_atlas.sh
[2026-02-28 20:51:06] drwxrwx--x 2 boinc boinc      4096 Feb 28 19:27 shared
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc         0 Feb 28 19:27 boinc_setup_complete
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc      6376 Feb 28 19:27 init_data.xml
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc         0 Feb 28 19:27 boinc_lockfile
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc      2561 Feb 28 19:27 pandaJob.out
[2026-02-28 20:51:06] -rw------- 1 boinc boinc    998790 Feb 28 19:27 agis_schedconf.cvmfs.json
[2026-02-28 20:51:06] -rw------- 1 boinc boinc   1513015 Feb 28 19:27 agis_ddmendpoints.agis.ALL.json
[2026-02-28 20:51:06] -rw------- 1 boinc boinc       427 Feb 28 19:27 workernode_map.json
[2026-02-28 20:51:06] drwx------ 5 boinc boinc      4096 Feb 28 19:27 pilot3
[2026-02-28 20:51:06] -rw------- 1 boinc boinc 212085673 Feb 28 20:50 HITS.48838462._001842.pool.root.1
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc       529 Feb 28 20:50 boinc_task_state.xml
[2026-02-28 20:51:06] -rw------- 1 boinc boinc      1020 Feb 28 20:50 memory_monitor_summary.json
[2026-02-28 20:51:06] -rw------- 1 boinc boinc    265394 Feb 28 20:50 log.48838462._001842.job.log.tgz.1
[2026-02-28 20:51:06] -rw------- 1 boinc boinc      6312 Feb 28 20:50 heartbeat.json
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc        27 Feb 28 20:51 wrapper_checkpoint.txt
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc      8192 Feb 28 20:51 boinc_mmap_file
[2026-02-28 20:51:06] -rw------- 1 boinc boinc       746 Feb 28 20:51 pilotlog.txt
[2026-02-28 20:51:06] -rw------- 1 boinc boinc        95 Feb 28 20:51 pilot_heartbeat.json
[2026-02-28 20:51:06] -rw------- 1 boinc boinc    728874 Feb 28 20:51 log.48838462._001842.job.log.1
[2026-02-28 20:51:06] -rw------- 1 boinc boinc       357 Feb 28 20:51 output.list
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc       620 Feb 28 20:51 runtime_log
[2026-02-28 20:51:06] -rw------- 1 boinc boinc   1013760 Feb 28 20:51 result.tar.gz
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc      8896 Feb 28 20:51 runtime_log.err
[2026-02-28 20:51:06] -rw------- 1 boinc boinc       657 Feb 28 20:51 0a9KDm1nFG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmBO5KDmNYiV8n.diag
[2026-02-28 20:51:06] -rw-r--r-- 1 boinc boinc     11226 Feb 28 20:51 stderr.txt
[2026-02-28 20:51:06] HITS file was successfully produced:
[2026-02-28 20:51:06] -rw------- 1 boinc boinc 212085673 Feb 28 20:50 shared/HITS.pool.root.1
[2026-02-28 20:51:06]  *** Contents of shared directory: ***
[2026-02-28 20:51:06] total 477976
[2026-02-28 20:51:06] -rw-r--r-- 2 boinc boinc 275722234 Feb 28 19:27 ATLAS.root_0
[2026-02-28 20:51:06] -rw-r--r-- 2 boinc boinc    597968 Feb 28 19:27 input.tar.gz
[2026-02-28 20:51:06] -rw-r--r-- 2 boinc boinc     15845 Feb 28 19:27 start_atlas.sh
[2026-02-28 20:51:06] -rw------- 1 boinc boinc 212085673 Feb 28 20:50 HITS.pool.root.1
[2026-02-28 20:51:06] -rw------- 1 boinc boinc   1013760 Feb 28 20:51 result.tar.gz
20:51:07 (463080): run_atlas exited; CPU time 18806.743004
20:51:07 (463080): called boinc_finish(0)

</stderr_txt>
]]>

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