Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:27:35 (384861): wrapper (7.7.26015): starting
14:27:35 (384861): wrapper: running run_atlas (--nthreads 2)
[2026-02-28 14:27:35] Arguments: --nthreads 2
[2026-02-28 14:27:35] Threads: 2
[2026-02-28 14:27:35] Checking for CVMFS
[2026-02-28 14:27:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 14:27:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 14:27:36] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 14:27:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 14:27:36] 2.9.2.0 6350 4276 58108 156734 1 49 24959080 36864001 0 130560 0 1110641 99.970 175850 725 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 14:27:36] CVMFS is ok
[2026-02-28 14:27:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 14:27:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 14:27:36] Further information can be found at the LHC@home message board.
[2026-02-28 14:27:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 14:27:36] Checking for apptainer binary...
[2026-02-28 14:27:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 14:27:36] Running /usr/bin/apptainer --version
[2026-02-28 14:27:36] apptainer version 1.4.1-1.1
[2026-02-28 14:27:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 14:27:36] legendA165
[2026-02-28 14:27:36] apptainer works
[2026-02-28 14:27:36] Set ATHENA_PROC_NUMBER=2
[2026-02-28 14:27:36] Set ATHENA_CORE_NUMBER=2
[2026-02-28 14:27:36] Starting ATLAS job with PandaID=7032082091
[2026-02-28 14:27:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 20:14:43]  *** The last 200 lines of the pilot log: ***
[2026-02-28 20:14:43] 2026-02-28 19:14:13,035 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 20:14:43] 2026-02-28 19:14:13,035 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-28 20:14:43] 2026-02-28 19:14:13,035 | WARNING  | maxPSS not found in memory monitor output
[2026-02-28 20:14:43] 2026-02-28 19:14:13,035 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7032082091/payload.stdout) since it has not been created yet
[2026-02-28 20:14:43] 2026-02-28 19:14:13,035 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 20:14:43] 2026-02-28 19:14:13,045 | INFO     | sufficient remaining disk space (184701419520 B)
[2026-02-28 20:14:43] 2026-02-28 19:14:13,045 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-28 20:14:43] 2026-02-28 19:14:13,045 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7032082091/HITS.48843455._000019.pool.root.1 since it does not exist
[2026-02-28 20:14:43] 2026-02-28 19:14:13,073 | INFO     | number of running child processes to parent process 393293: 1
[2026-02-28 20:14:43] 2026-02-28 19:14:13,073 | INFO     | maximum number of monitored processes: 6
[2026-02-28 20:14:43] 2026-02-28 19:14:13,073 | INFO     | aborting job monitoring since job object (job id=7032082091) has expired
[2026-02-28 20:14:43] 2026-02-28 19:14:13,165 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 20:14:43] 2026-02-28 19:14:13,183 | INFO     | sufficient remaining disk space (184701419520 B)
[2026-02-28 20:14:43] 2026-02-28 19:14:13,183 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 20:14:43] 2026-02-28 19:14:13,183 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 20:14:43] 2026-02-28 19:14:13,184 | INFO     | update_server=False
[2026-02-28 20:14:43] 2026-02-28 19:14:13,184 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 20:14:43] 2026-02-28 19:14:13,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 20:14:43] 2026-02-28 19:14:13,185 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 20:14:43] 2026-02-28 19:14:13,185 | INFO     | will abort loop
[2026-02-28 20:14:43] 2026-02-28 19:14:13,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 20:14:43] 2026-02-28 19:14:13,416 | INFO     | all data control threads have been joined
[2026-02-28 20:14:43] 2026-02-28 19:14:14,015 | INFO     | all job control threads have been joined
[2026-02-28 20:14:43] 2026-02-28 19:14:14,190 | INFO     | [job] retrieve thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:14,191 | INFO     | [job] job monitor thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:14,191 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:14,192 | INFO     | [job] queue monitor thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:14,422 | INFO     | [payload] validate_post thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:14,422 | INFO     | [data] control thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:14,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 20:14:43] 2026-02-28 19:14:14,599 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:14,615 | INFO     | [payload] failed_post thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:14,615 | INFO     | all payload control threads have been joined
[2026-02-28 20:14:43] 2026-02-28 19:14:15,021 | INFO     | [job] control thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:15,209 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:15,420 | INFO     | [job] validate thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:15,461 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:15,506 | INFO     | [data] copytool_in thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:15,621 | INFO     | [payload] control thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:16,453 | INFO     | [data] copytool_out thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:17,193 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 20:14:43] 2026-02-28 19:14:21,185 | INFO     | [monitor] cgroup control has ended
[2026-02-28 20:14:43] 2026-02-28 19:14:22,613 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140374170302272)>', '<ExcThread(monitor, started 140373020112640)>']
[2026-02-28 20:14:43] 2026-02-28 19:14:27,639 | INFO     | all workflow threads have been joined
[2026-02-28 20:14:43] 2026-02-28 19:14:27,639 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 20:14:43] 2026-02-28 19:14:27,640 | INFO     | traces error code: 0
[2026-02-28 20:14:43] 2026-02-28 19:14:27,640 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 20:14:43] 2026-02-28 19:14:42,448 | INFO     | 20785s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-28 20:14:43] 2026-02-28 19:14:43,495 | INFO     | PID=388885 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 20:14:43] 2026-02-28 19:14:43,496 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 20:14:43] 2026-02-28 19:14:43,496 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 20:14:43] 2026-02-28 19:14:43,496 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 20:14:43] 2026-02-28 19:14:43,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 20:14:43] 2026-02-28 19:14:43,496 | CRITICAL | thread 'MainThread' is not alive
[2026-02-28 20:14:43] 2026-02-28 19:14:43,496 | INFO     | [monitor] control thread has ended
[2026-02-28 20:14:43] 2026-02-28 19:14:43,534 [wrapper] ==== pilot stdout END ====
[2026-02-28 20:14:43] 2026-02-28 19:14:43,537 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 20:14:43] 2026-02-28 19:14:43,540 [wrapper] pilotpid: 388885
[2026-02-28 20:14:43] 2026-02-28 19:14:43,543 [wrapper] Pilot exit status: 0
[2026-02-28 20:14:43] 2026-02-28 19:14:43,548 [wrapper] pandaids: 7032082091
[2026-02-28 20:14:43] 2026-02-28 19:14:43,560 [wrapper] cleanup supervisor_pilot  399787 388886
[2026-02-28 20:14:43] 2026-02-28 19:14:43,563 [wrapper] Test setup, not cleaning
[2026-02-28 20:14:43] 2026-02-28 19:14:43,564 [wrapper] apfmon messages muted
[2026-02-28 20:14:43] 2026-02-28 19:14:43,566 [wrapper] ==== wrapper stdout END ====
[2026-02-28 20:14:43] 2026-02-28 19:14:43,569 [wrapper] ==== wrapper stderr END ====
[2026-02-28 20:14:43]  *** Error codes and diagnostics ***
[2026-02-28 20:14:43]     "exeErrorCode": 0,
[2026-02-28 20:14:43]     "exeErrorDiag": "",
[2026-02-28 20:14:43]     "pilotErrorCode": 0,
[2026-02-28 20:14:43]     "pilotErrorDiag": "",
[2026-02-28 20:14:43]  *** Listing of results directory ***
[2026-02-28 20:14:43] total 514232
[2026-02-28 20:14:43] -rwx------ 1 boinc boinc     36322 Feb 27 21:39 runpilot2-wrapper.sh
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc      5111 Feb 27 21:42 queuedata.json
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc    584627 Feb 27 21:42 pilot3.tar.gz
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc       100 Feb 28 14:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 20:14:43] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 14:27 run_atlas
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc       105 Feb 28 14:27 job.xml
[2026-02-28 20:14:43] -rw-r--r-- 2 boinc boinc 254167849 Feb 28 14:27 EVNT.48451018._000001.pool.root.1
[2026-02-28 20:14:43] -rw-r--r-- 2 boinc boinc    597957 Feb 28 14:27 input.tar.gz
[2026-02-28 20:14:43] -rw-r--r-- 2 boinc boinc     15845 Feb 28 14:27 start_atlas.sh
[2026-02-28 20:14:43] drwxrwx--x 2 boinc boinc      4096 Feb 28 14:27 shared
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc         0 Feb 28 14:27 boinc_setup_complete
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc      6209 Feb 28 14:27 init_data.xml
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc         0 Feb 28 14:27 boinc_lockfile
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc      2608 Feb 28 14:27 pandaJob.out
[2026-02-28 20:14:43] -rw------- 1 boinc boinc    998790 Feb 28 14:27 agis_schedconf.cvmfs.json
[2026-02-28 20:14:43] -rw------- 1 boinc boinc       423 Feb 28 14:27 workernode_map.json
[2026-02-28 20:14:43] drwx------ 5 boinc boinc      4096 Feb 28 14:27 pilot3
[2026-02-28 20:14:43] -rw------- 1 boinc boinc 261754987 Feb 28 20:13 HITS.48843455._000019.pool.root.1
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc       530 Feb 28 20:13 boinc_task_state.xml
[2026-02-28 20:14:43] -rw------- 1 boinc boinc        95 Feb 28 20:14 pilot_heartbeat.json
[2026-02-28 20:14:43] -rw------- 1 boinc boinc      1017 Feb 28 20:14 memory_monitor_summary.json
[2026-02-28 20:14:43] -rw------- 1 boinc boinc   1513015 Feb 28 20:14 agis_ddmendpoints.agis.ALL.json
[2026-02-28 20:14:43] -rw------- 1 boinc boinc    465870 Feb 28 20:14 log.48843455._000019.job.log.tgz.1
[2026-02-28 20:14:43] -rw------- 1 boinc boinc      6298 Feb 28 20:14 heartbeat.json
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc      8192 Feb 28 20:14 boinc_mmap_file
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc        28 Feb 28 20:14 wrapper_checkpoint.txt
[2026-02-28 20:14:43] -rw------- 1 boinc boinc       932 Feb 28 20:14 pilotlog.txt
[2026-02-28 20:14:43] -rw------- 1 boinc boinc   2902496 Feb 28 20:14 log.48843455._000019.job.log.1
[2026-02-28 20:14:43] -rw------- 1 boinc boinc       357 Feb 28 20:14 output.list
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc       620 Feb 28 20:14 runtime_log
[2026-02-28 20:14:43] -rw------- 1 boinc boinc   3389440 Feb 28 20:14 result.tar.gz
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc      8917 Feb 28 20:14 runtime_log.err
[2026-02-28 20:14:43] -rw------- 1 boinc boinc       665 Feb 28 20:14 XCiMDmhnJG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmZ23KDmh3kUVm.diag
[2026-02-28 20:14:43] -rw-r--r-- 1 boinc boinc      9592 Feb 28 20:14 stderr.txt
[2026-02-28 20:14:43] HITS file was successfully produced:
[2026-02-28 20:14:43] -rw------- 1 boinc boinc 261754987 Feb 28 20:13 shared/HITS.pool.root.1
[2026-02-28 20:14:43]  *** Contents of shared directory: ***
[2026-02-28 20:14:43] total 507752
[2026-02-28 20:14:43] -rw-r--r-- 2 boinc boinc 254167849 Feb 28 14:27 ATLAS.root_0
[2026-02-28 20:14:43] -rw-r--r-- 2 boinc boinc    597957 Feb 28 14:27 input.tar.gz
[2026-02-28 20:14:43] -rw-r--r-- 2 boinc boinc     15845 Feb 28 14:27 start_atlas.sh
[2026-02-28 20:14:43] -rw------- 1 boinc boinc 261754987 Feb 28 20:13 HITS.pool.root.1
[2026-02-28 20:14:43] -rw------- 1 boinc boinc   3389440 Feb 28 20:14 result.tar.gz
20:14:44 (384861): run_atlas exited; CPU time 41156.567667
20:14:44 (384861): called boinc_finish(0)

</stderr_txt>
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