Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:57:23 (738837): wrapper (7.7.26015): starting
10:57:23 (738837): wrapper: running run_atlas (--nthreads 4)
[2026-02-28 10:57:23] Arguments: --nthreads 4
[2026-02-28 10:57:23] Threads: 4
[2026-02-28 10:57:23] Checking for CVMFS
[2026-02-28 10:57:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 10:57:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 10:57:24] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 10:57:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 10:57:24] 2.9.2.0 79673 3944 96436 156727 2 50 27741650 36864001 0 130560 0 1723082 99.980 168452 6627 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 10:57:24] CVMFS is ok
[2026-02-28 10:57:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 10:57:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 10:57:24] Further information can be found at the LHC@home message board.
[2026-02-28 10:57:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 10:57:24] Checking for apptainer binary...
[2026-02-28 10:57:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 10:57:24] Running /usr/bin/apptainer --version
[2026-02-28 10:57:24] apptainer version 1.4.1-1.1
[2026-02-28 10:57:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 10:57:24] thA309
[2026-02-28 10:57:24] apptainer works
[2026-02-28 10:57:24] Set ATHENA_PROC_NUMBER=4
[2026-02-28 10:57:24] Set ATHENA_CORE_NUMBER=4
[2026-02-28 10:57:24] Starting ATLAS job with PandaID=7031687376
[2026-02-28 10:57:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 12:25:07]  *** The last 200 lines of the pilot log: ***
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | job 7031687376 has completed (purged errors)
[2026-02-28 12:25:07] 2026-02-28 11:24:35,077 | INFO     | overall cleanup function is called
[2026-02-28 12:25:07] 2026-02-28 11:24:36,084 | INFO     | --- collectZombieJob: --- 10, [747469]
[2026-02-28 12:25:07] 2026-02-28 11:24:36,084 | INFO     | zombie collector waiting for pid 747469
[2026-02-28 12:25:07] 2026-02-28 11:24:36,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 12:25:07] 2026-02-28 11:24:36,084 | INFO     | collected zombie processes
[2026-02-28 12:25:07] 2026-02-28 11:24:36,084 | INFO     | will attempt to kill all subprocesses of pid=747469
[2026-02-28 12:25:07] 2026-02-28 11:24:36,134 | INFO     | process IDs to be killed: [747469] (in reverse order)
[2026-02-28 12:25:07] 2026-02-28 11:24:36,170 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 12:25:07] 2026-02-28 11:24:36,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 12:25:07] 2026-02-28 11:24:36,176 | INFO     | did not find any defunct processes belonging to 747469
[2026-02-28 12:25:07] 2026-02-28 11:24:36,180 | INFO     | did not find any defunct processes belonging to 747469
[2026-02-28 12:25:07] 2026-02-28 11:24:36,180 | INFO     | ready for new job
[2026-02-28 12:25:07] 2026-02-28 11:24:36,180 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 12:25:07] 2026-02-28 11:24:36,181 | INFO     | **************************************
[2026-02-28 12:25:07] 2026-02-28 11:24:36,181 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 12:25:07] 2026-02-28 11:24:36,181 | INFO     | **************************************
[2026-02-28 12:25:07] 2026-02-28 11:24:36,181 | INFO     | 
[2026-02-28 12:25:07] 2026-02-28 11:24:36,181 | INFO     | architecture information:
[2026-02-28 12:25:07] 2026-02-28 11:24:36,182 | INFO     | executing command: cat /etc/os-release
[2026-02-28 12:25:07] 2026-02-28 11:24:36,196 | INFO     | cat /etc/os-release:
[2026-02-28 12:25:07] NAME="CentOS Linux"
[2026-02-28 12:25:07] VERSION="7 (Core)"
[2026-02-28 12:25:07] ID="centos"
[2026-02-28 12:25:07] ID_LIKE="rhel fedora"
[2026-02-28 12:25:07] VERSION_ID="7"
[2026-02-28 12:25:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 12:25:07] ANSI_COLOR="0;31"
[2026-02-28 12:25:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 12:25:07] HOME_URL="https://www.centos.org/"
[2026-02-28 12:25:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 12:25:07] 
[2026-02-28 12:25:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 12:25:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 12:25:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 12:25:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 12:25:07] 
[2026-02-28 12:25:07] 2026-02-28 11:24:36,197 | INFO     | **************************************
[2026-02-28 12:25:07] 2026-02-28 11:24:36,228 | WARNING  | process 747469 can no longer be monitored (due to stat problems) - aborting
[2026-02-28 12:25:07] 2026-02-28 11:24:36,265 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 12:25:07] 2026-02-28 11:24:36,311 | INFO     | number of running child processes to parent process 747469: 1
[2026-02-28 12:25:07] 2026-02-28 11:24:36,311 | INFO     | maximum number of monitored processes: 6
[2026-02-28 12:25:07] 2026-02-28 11:24:36,311 | INFO     | aborting job monitoring since job object (job id=7031687376) has expired
[2026-02-28 12:25:07] 2026-02-28 11:24:36,700 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 12:25:07] 2026-02-28 11:24:36,718 | INFO     | sufficient remaining disk space (231047430144 B)
[2026-02-28 12:25:07] 2026-02-28 11:24:36,718 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 12:25:07] 2026-02-28 11:24:36,718 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 12:25:07] 2026-02-28 11:24:36,718 | INFO     | update_server=False
[2026-02-28 12:25:07] 2026-02-28 11:24:36,718 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 12:25:07] 2026-02-28 11:24:36,718 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 12:25:07] 2026-02-28 11:24:36,718 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 12:25:07] 2026-02-28 11:24:36,718 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 12:25:07] 2026-02-28 11:24:36,719 | INFO     | will abort loop
[2026-02-28 12:25:07] 2026-02-28 11:24:36,882 | INFO     | all data control threads have been joined
[2026-02-28 12:25:07] 2026-02-28 11:24:37,675 | INFO     | all payload control threads have been joined
[2026-02-28 12:25:07] 2026-02-28 11:24:37,724 | INFO     | [job] retrieve thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:37,724 | INFO     | [job] queue monitor thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:37,724 | INFO     | [job] job monitor thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:37,741 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:37,763 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:37,884 | INFO     | [data] control thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:37,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 12:25:07] 2026-02-28 11:24:37,952 | INFO     | [data] copytool_in thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:38,262 | INFO     | [payload] failed_post thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:38,299 | INFO     | all job control threads have been joined
[2026-02-28 12:25:07] 2026-02-28 11:24:38,681 | INFO     | [payload] control thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:38,879 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:38,939 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:39,111 | INFO     | [job] validate thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:39,210 | INFO     | [payload] validate_post thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:39,305 | INFO     | [job] control thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:39,951 | INFO     | [data] copytool_out thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:40,726 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 12:25:07] 2026-02-28 11:24:43,298 | INFO     | [monitor] cgroup control has ended
[2026-02-28 12:25:07] 2026-02-28 11:24:45,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139966313281344)>', '<ExcThread(monitor, started 139965358909184)>']
[2026-02-28 12:25:07] 2026-02-28 11:24:50,317 | INFO     | all workflow threads have been joined
[2026-02-28 12:25:07] 2026-02-28 11:24:50,317 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 12:25:07] 2026-02-28 11:24:50,318 | INFO     | traces error code: 0
[2026-02-28 12:25:07] 2026-02-28 11:24:50,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 12:25:07] 2026-02-28 11:25:07,062 | INFO     | PID=742950 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 12:25:07] 2026-02-28 11:25:07,063 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 12:25:07] 2026-02-28 11:25:07,063 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 12:25:07] 2026-02-28 11:25:07,063 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 12:25:07] 2026-02-28 11:25:07,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 12:25:07] 2026-02-28 11:25:07,063 | CRITICAL | thread 'MainThread' is not alive
[2026-02-28 12:25:07] 2026-02-28 11:25:07,063 | INFO     | [monitor] control thread has ended
[2026-02-28 12:25:07] 2026-02-28 11:25:07,139 [wrapper] ==== pilot stdout END ====
[2026-02-28 12:25:07] 2026-02-28 11:25:07,144 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 12:25:07] 2026-02-28 11:25:07,148 [wrapper] pilotpid: 742950
[2026-02-28 12:25:07] 2026-02-28 11:25:07,152 [wrapper] Pilot exit status: 0
[2026-02-28 12:25:07] 2026-02-28 11:25:07,165 [wrapper] pandaids: 7031687376
[2026-02-28 12:25:07] 2026-02-28 11:25:07,189 [wrapper] cleanup supervisor_pilot  753810 742951
[2026-02-28 12:25:07] 2026-02-28 11:25:07,193 [wrapper] Test setup, not cleaning
[2026-02-28 12:25:07] 2026-02-28 11:25:07,197 [wrapper] apfmon messages muted
[2026-02-28 12:25:07] 2026-02-28 11:25:07,201 [wrapper] ==== wrapper stdout END ====
[2026-02-28 12:25:07] 2026-02-28 11:25:07,205 [wrapper] ==== wrapper stderr END ====
[2026-02-28 12:25:07]  *** Error codes and diagnostics ***
[2026-02-28 12:25:07]     "exeErrorCode": 0,
[2026-02-28 12:25:07]     "exeErrorDiag": "",
[2026-02-28 12:25:07]     "pilotErrorCode": 0,
[2026-02-28 12:25:07]     "pilotErrorDiag": "",
[2026-02-28 12:25:07]  *** Listing of results directory ***
[2026-02-28 12:25:07] total 518360
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc      5111 Feb 27 17:20 queuedata.json
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc    584627 Feb 27 17:20 pilot3.tar.gz
[2026-02-28 12:25:07] -rwx------ 1 boinc boinc     36322 Feb 27 17:20 runpilot2-wrapper.sh
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc       100 Feb 28 10:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 12:25:07] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 10:57 run_atlas
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc       105 Feb 28 10:57 job.xml
[2026-02-28 12:25:07] -rw-r--r-- 2 boinc boinc 289242859 Feb 28 10:57 EVNT.48220085._000300.pool.root.1
[2026-02-28 12:25:07] drwxrwx--x 2 boinc boinc      4096 Feb 28 10:57 shared
[2026-02-28 12:25:07] -rw-r--r-- 2 boinc boinc    597958 Feb 28 10:57 input.tar.gz
[2026-02-28 12:25:07] -rw-r--r-- 2 boinc boinc     15845 Feb 28 10:57 start_atlas.sh
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc         0 Feb 28 10:57 boinc_setup_complete
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc      6377 Feb 28 10:57 init_data.xml
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc         0 Feb 28 10:57 boinc_lockfile
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc      2567 Feb 28 10:57 pandaJob.out
[2026-02-28 12:25:07] -rw------- 1 boinc boinc    998790 Feb 28 10:57 agis_schedconf.cvmfs.json
[2026-02-28 12:25:07] -rw------- 1 boinc boinc   1513015 Feb 28 10:57 agis_ddmendpoints.agis.ALL.json
[2026-02-28 12:25:07] -rw------- 1 boinc boinc       421 Feb 28 10:57 workernode_map.json
[2026-02-28 12:25:07] drwx------ 5 boinc boinc      4096 Feb 28 10:57 pilot3
[2026-02-28 12:25:07] -rw------- 1 boinc boinc 235600645 Feb 28 12:24 HITS.48838416._007358.pool.root.1
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc       529 Feb 28 12:24 boinc_task_state.xml
[2026-02-28 12:25:07] -rw------- 1 boinc boinc      1022 Feb 28 12:24 memory_monitor_summary.json
[2026-02-28 12:25:07] -rw------- 1 boinc boinc    261177 Feb 28 12:24 log.48838416._007358.job.log.tgz.1
[2026-02-28 12:25:07] -rw------- 1 boinc boinc      6301 Feb 28 12:24 heartbeat.json
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc      8192 Feb 28 12:25 boinc_mmap_file
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc        27 Feb 28 12:25 wrapper_checkpoint.txt
[2026-02-28 12:25:07] -rw------- 1 boinc boinc       816 Feb 28 12:25 pilotlog.txt
[2026-02-28 12:25:07] -rw------- 1 boinc boinc        95 Feb 28 12:25 pilot_heartbeat.json
[2026-02-28 12:25:07] -rw------- 1 boinc boinc    760482 Feb 28 12:25 log.48838416._007358.job.log.1
[2026-02-28 12:25:07] -rw------- 1 boinc boinc       357 Feb 28 12:25 output.list
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc       620 Feb 28 12:25 runtime_log
[2026-02-28 12:25:07] -rw------- 1 boinc boinc   1044480 Feb 28 12:25 result.tar.gz
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc      8896 Feb 28 12:25 runtime_log.err
[2026-02-28 12:25:07] -rw------- 1 boinc boinc       657 Feb 28 12:25 kQoLDm8kFG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmTG5KDmxyxwjn.diag
[2026-02-28 12:25:07] -rw-r--r-- 1 boinc boinc     12642 Feb 28 12:25 stderr.txt
[2026-02-28 12:25:07] HITS file was successfully produced:
[2026-02-28 12:25:07] -rw------- 1 boinc boinc 235600645 Feb 28 12:24 shared/HITS.pool.root.1
[2026-02-28 12:25:07]  *** Contents of shared directory: ***
[2026-02-28 12:25:07] total 514168
[2026-02-28 12:25:07] -rw-r--r-- 2 boinc boinc 289242859 Feb 28 10:57 ATLAS.root_0
[2026-02-28 12:25:07] -rw-r--r-- 2 boinc boinc    597958 Feb 28 10:57 input.tar.gz
[2026-02-28 12:25:07] -rw-r--r-- 2 boinc boinc     15845 Feb 28 10:57 start_atlas.sh
[2026-02-28 12:25:07] -rw------- 1 boinc boinc 235600645 Feb 28 12:24 HITS.pool.root.1
[2026-02-28 12:25:07] -rw------- 1 boinc boinc   1044480 Feb 28 12:25 result.tar.gz
12:25:08 (738837): run_atlas exited; CPU time 19803.558757
12:25:08 (738837): called boinc_finish(0)

</stderr_txt>
]]>

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