Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:26:19 (3111344): wrapper (7.7.26015): starting
10:26:19 (3111344): wrapper: running run_atlas (--nthreads 12)
[2026-02-28 10:26:19] Arguments: --nthreads 12
[2026-02-28 10:26:19] Threads: 12
[2026-02-28 10:26:19] Checking for CVMFS
[2026-02-28 10:26:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 10:26:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 10:26:20] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 10:26:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 10:26:21] 2.13.3.0 8852 26813 216560 156727 1 64 34238353 46080001 15635 130560 0 85869321 99.775 48933306 25267 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-02-28 10:26:21] CVMFS is ok
[2026-02-28 10:26:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 10:26:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 10:26:21] Further information can be found at the LHC@home message board.
[2026-02-28 10:26:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 10:26:21] Checking for apptainer binary...
[2026-02-28 10:26:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 10:26:21] Running /usr/bin/apptainer --version
[2026-02-28 10:26:21] apptainer version 1.4.5-2.el9
[2026-02-28 10:26:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 10:31:16] mff2103.farm.particle.cz
[2026-02-28 10:31:16] apptainer works
[2026-02-28 10:31:16] Set ATHENA_PROC_NUMBER=12
[2026-02-28 10:31:16] Set ATHENA_CORE_NUMBER=12
[2026-02-28 10:31:16] Starting ATLAS job with PandaID=7031579478
[2026-02-28 10:31:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 12:02:21]  *** The last 200 lines of the pilot log: ***
[2026-02-28 12:02:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-28 12:02:21]  is_altstaged=None
[2026-02-28 12:02:21]  is_tar=False
[2026-02-28 12:02:21]  lfn=log.48843316._000067.job.log.tgz.1
[2026-02-28 12:02:21]  mtime=0
[2026-02-28 12:02:21]  protocol_id=None
[2026-02-28 12:02:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-28 12:02:21]  replicas=None
[2026-02-28 12:02:21]  scope=mc23_13p6TeV
[2026-02-28 12:02:21]  status=None
[2026-02-28 12:02:21]  status_code=0
[2026-02-28 12:02:21]  storage_token=
[2026-02-28 12:02:21]  surl=/scratch/.boinc/slots/6/PanDA_Pilot-7031579478/log.48843316._000067.job.log.tgz.1
[2026-02-28 12:02:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/5d/log.48843316._000067.job.log.tgz.1
[2026-02-28 12:02:21]  workdir=None
[2026-02-28 12:02:21] ]
[2026-02-28 12:02:21] 2026-02-28 10:58:38,040 | INFO     | time since job start (5170s) is within the limit (349056.0s)
[2026-02-28 12:02:21] 2026-02-28 10:58:38,099 | INFO     | transferring file log.48843316._000067.job.log.tgz.1 from /scratch/.boinc/slots/6/PanDA_Pilot-7031579478/log.48843316._000067.job.log.tgz.1 to /scratch/.boinc/slot
[2026-02-28 12:02:21] 2026-02-28 10:58:38,099 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/6/PanDA_Pilot-7031579478/log.48843316._000067.job.log.tgz.1 /scratch/.boinc/slots/6/log.48843316._000067.j
[2026-02-28 12:02:21] 2026-02-28 10:58:38,278 | INFO     | adding to output.list: log.48843316._000067.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/5d/log.48843316._000067.job.log.tg
[2026-02-28 12:02:21] 2026-02-28 10:58:38,279 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-28 12:02:21] 2026-02-28 10:58:38,279 | INFO     | summary of transferred files:
[2026-02-28 12:02:21] 2026-02-28 10:58:38,279 | INFO     |  -- lfn=log.48843316._000067.job.log.tgz.1, status_code=0, status=transferred
[2026-02-28 12:02:21] 2026-02-28 10:58:38,279 | INFO     | stage-out finished correctly
[2026-02-28 12:02:21] 2026-02-28 10:58:39,044 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-28 12:02:21] 2026-02-28 10:58:40,064 | INFO     | time since job start (5172s) is within the limit (349056.0s)
[2026-02-28 12:02:21] 2026-02-28 10:58:40,108 | INFO     | monitor loop #347: job 0:7031579478 is in state 'finished'
[2026-02-28 12:02:21] 2026-02-28 10:58:40,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 12:02:21] 2026-02-28 10:58:41,614 | INFO     | job 7031579478 has state=finished
[2026-02-28 12:02:21] 2026-02-28 10:58:41,614 | INFO     | preparing for final server update for job 7031579478 in state='finished'
[2026-02-28 12:02:21] 2026-02-28 10:58:41,617 | INFO     | reading metadata from: /scratch/.boinc/slots/6/PanDA_Pilot-7031579478/jobReport.json
[2026-02-28 12:02:21] 2026-02-28 10:58:41,619 | INFO     | added worker_node to metadata from /scratch/.boinc/slots/6/workernode_map.json
[2026-02-28 12:02:21] 2026-02-28 10:58:41,620 | INFO     | this job has now completed (state=finished)
[2026-02-28 12:02:21] 2026-02-28 10:58:41,620 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-28 12:02:21] 2026-02-28 10:58:41,620 | INFO     | log transfer has been attempted: DONE
[2026-02-28 12:02:21] 2026-02-28 10:58:41,620 | INFO     | job 7031579478 has finished - writing final server update
[2026-02-28 12:02:21] 2026-02-28 10:58:41,620 | INFO     | total number of processed events: 400 (read)
[2026-02-28 12:02:21] 2026-02-28 10:58:41,676 | INFO     | using path: /scratch/.boinc/slots/6/PanDA_Pilot-7031579478/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 12:02:21] 2026-02-28 10:58:41,676 | INFO     | extracted standard info from prmon json
[2026-02-28 12:02:21] 2026-02-28 10:58:41,676 | INFO     | extracted standard memory fields from prmon json
[2026-02-28 12:02:21] 2026-02-28 10:58:41,677 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-28 12:02:21] 2026-02-28 10:58:41,677 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-28 12:02:21] 2026-02-28 10:58:41,677 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-28 12:02:21] 2026-02-28 10:58:41,691 | INFO     | fitting pss+swap vs Time
[2026-02-28 12:02:21] 2026-02-28 10:58:41,692 | INFO     | sum of square deviations: 141537446.9870133
[2026-02-28 12:02:21] 2026-02-28 10:58:41,692 | INFO     | sum of deviations: -2731420225.3636355
[2026-02-28 12:02:21] 2026-02-28 10:58:41,692 | INFO     | mean x: 1772273816.012987
[2026-02-28 12:02:21] 2026-02-28 10:58:41,692 | INFO     | mean y: 2763327.3636363638
[2026-02-28 12:02:21] 2026-02-28 10:58:41,692 | INFO     | intersect: 34204486256.4513
[2026-02-28 12:02:21] 2026-02-28 10:58:41,693 | INFO     | chi2: 0.05272358813357834
[2026-02-28 12:02:21] 2026-02-28 10:58:41,693 | INFO     | current memory leak: -19.30 B/s (using 77 data points, chi2=0.05)
[2026-02-28 12:02:21] 2026-02-28 10:58:41,693 | INFO     | could have reported an average CPU frequency of 2760 MHz (6 samples)
[2026-02-28 12:02:21] 2026-02-28 10:58:41,693 | INFO     | ..............................
[2026-02-28 12:02:21] 2026-02-28 10:58:41,698 | INFO     | . Timing measurements:
[2026-02-28 12:02:21] 2026-02-28 10:58:41,698 | INFO     | . get job = 0 s
[2026-02-28 12:02:21] 2026-02-28 10:58:41,698 | INFO     | . initial setup = 26 s
[2026-02-28 12:02:21] 2026-02-28 10:58:41,698 | INFO     | . payload setup = 26 s
[2026-02-28 12:02:21] 2026-02-28 10:58:41,698 | INFO     | . stage-in = 0 s
[2026-02-28 12:02:21] 2026-02-28 10:58:41,698 | INFO     | . payload execution = 5136 s
[2026-02-28 12:02:21] 2026-02-28 10:58:41,698 | INFO     | . stage-out = 2 s
[2026-02-28 12:02:21] 2026-02-28 10:58:41,698 | INFO     | . log creation = 0 s
[2026-02-28 12:02:21] 2026-02-28 10:58:41,698 | INFO     | ..............................
[2026-02-28 12:02:21] 2026-02-28 10:58:41,863 | INFO     | 
[2026-02-28 12:02:21] 2026-02-28 10:58:41,863 | INFO     | job summary report
[2026-02-28 12:02:21] 2026-02-28 10:58:41,863 | INFO     | --------------------------------------------------
[2026-02-28 12:02:21] 2026-02-28 10:58:41,863 | INFO     | PanDA job id: 7031579478
[2026-02-28 12:02:21] 2026-02-28 10:58:41,863 | INFO     | task id: 48843316
[2026-02-28 12:02:21] 2026-02-28 10:58:41,863 | INFO     | errors: (none)
[2026-02-28 12:02:21] 2026-02-28 10:58:41,863 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | pilot state: finished 
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | transexitcode: 0
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | exeerrorcode: 0
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | exeerrordiag: 
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | exitcode: 0
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | exitmsg: OK
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | cpuconsumptiontime: 41317 s
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | nevents: 400
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | neventsw: 0
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | pid: 3147165
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | pgrp: 3147165
[2026-02-28 12:02:21] 2026-02-28 10:58:41,864 | INFO     | corecount: 12
[2026-02-28 12:02:21] 2026-02-28 10:58:41,865 | INFO     | event service: False
[2026-02-28 12:02:21] 2026-02-28 10:58:41,865 | INFO     | sizes: {0: 2281911, 1: 2282372, 5167: 2308860, 5169: 2317860, 5170: 2317916, 5173: 2318110}
[2026-02-28 12:02:21] 2026-02-28 10:58:41,865 | INFO     | --------------------------------------------------
[2026-02-28 12:02:21] 2026-02-28 10:58:41,865 | INFO     | 
[2026-02-28 12:02:21] 2026-02-28 10:58:41,865 | INFO     | executing command: ls -lF /scratch/.boinc/slots/6
[2026-02-28 12:02:21] 2026-02-28 10:58:42,073 | INFO     | time since job start (5174s) is within the limit (349056.0s)
[2026-02-28 12:02:21] 2026-02-28 10:58:42,091 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,091 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,091 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,091 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,091 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,091 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,092 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,093 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 12:02:21] 2026-02-28 10:58:42,093 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,093 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 12:02:21] 2026-02-28 10:58:42,093 | INFO     | job 7031579478 has completed (purged errors)
[2026-02-28 12:02:21] 2026-02-28 10:58:42,093 | INFO     | overall cleanup function is called
[2026-02-28 12:02:21] 2026-02-28 10:58:43,110 | INFO     | --- collectZombieJob: --- 10, [3147165]
[2026-02-28 12:02:21] 2026-02-28 10:58:43,110 | INFO     | zombie collector waiting for pid 3147165
[2026-02-28 12:02:21] 2026-02-28 10:58:43,111 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 12:02:21] 2026-02-28 10:58:43,111 | INFO     | collected zombie processes
[2026-02-28 12:02:21] 2026-02-28 10:58:43,111 | INFO     | will attempt to kill all subprocesses of pid=3147165
[2026-02-28 12:02:21] 2026-02-28 10:58:44,865 | INFO     | PID=3137646 has CPU usage=15.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-28 12:02:21] 2026-02-28 10:58:44,866 | INFO     | .. there are 41 such processes running
[2026-02-28 12:02:21] 2026-02-28 10:58:44,924 | INFO     | process IDs to be killed: [3147165] (in reverse order)
[2026-02-28 12:02:21] 2026-02-28 10:58:45,476 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 12:02:21] 2026-02-28 10:58:45,476 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 12:02:21] 2026-02-28 10:58:45,498 | INFO     | did not find any defunct processes belonging to 3147165
[2026-02-28 12:02:21] 2026-02-28 10:58:45,520 | INFO     | did not find any defunct processes belonging to 3147165
[2026-02-28 12:02:21] 2026-02-28 10:58:45,521 | INFO     | ready for new job
[2026-02-28 12:02:21] 2026-02-28 10:58:45,521 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 12:02:21] 2026-02-28 10:58:45,532 | INFO     | **************************************
[2026-02-28 12:02:21] 2026-02-28 10:58:45,533 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 12:02:21] 2026-02-28 10:58:45,533 | INFO     | **************************************
[2026-02-28 12:02:21] 2026-02-28 10:58:45,533 | INFO     | 
[2026-02-28 12:02:21] 2026-02-28 10:58:45,561 | INFO     | architecture information:
[2026-02-28 12:02:21] 2026-02-28 10:58:45,576 | INFO     | executing command: cat /etc/os-release
[2026-02-28 12:02:21] 2026-02-28 10:58:45,725 | INFO     | cat /etc/os-release:
[2026-02-28 12:02:21] NAME="CentOS Linux"
[2026-02-28 12:02:21] VERSION="7 (Core)"
[2026-02-28 12:02:21] ID="centos"
[2026-02-28 12:02:21] ID_LIKE="rhel fedora"
[2026-02-28 12:02:21] VERSION_ID="7"
[2026-02-28 12:02:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 12:02:21] ANSI_COLOR="0;31"
[2026-02-28 12:02:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 12:02:21] HOME_URL="https://www.centos.org/"
[2026-02-28 12:02:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 12:02:21] 
[2026-02-28 12:02:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 12:02:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 12:02:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 12:02:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 12:02:21] 
[2026-02-28 12:02:21] 2026-02-28 10:58:45,725 | INFO     | **************************************
[2026-02-28 12:02:21] 2026-02-28 10:58:46,229 | INFO     | executing command: df -mP /scratch/.boinc/slots/6
[2026-02-28 12:02:21] 2026-02-28 10:58:46,362 | INFO     | sufficient remaining disk space (1373219323904 B)
[2026-02-28 12:02:21] 2026-02-28 10:58:46,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 12:02:21] 2026-02-28 10:58:46,363 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 12:02:21] 2026-02-28 10:58:46,363 | INFO     | update_server=False
[2026-02-28 12:02:21] 2026-02-28 10:58:46,363 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 12:02:21] 2026-02-28 10:58:46,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 12:02:21] 2026-02-28 10:58:46,366 | INFO     | aborting loop
[2026-02-28 12:02:21] 2026-02-28 10:58:46,512 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 12:02:21] 2026-02-28 10:58:46,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 12:02:21] 2026-02-28 10:58:47,201 | INFO     | all job control threads have been joined
[2026-02-28 12:02:21] 2026-02-28 10:58:47,262 | INFO     | all data control threads have been joined
[2026-02-28 12:02:21] 2026-02-28 10:58:47,372 | INFO     | [job] job monitor thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:47,373 | INFO     | [job] retrieve thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:47,417 | INFO     | all payload control threads have been joined
[2026-02-28 12:02:21] 2026-02-28 10:58:47,610 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:47,788 | INFO     | [payload] failed_post thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:47,894 | INFO     | [job] queue monitor thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:48,159 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:48,179 | INFO     | [job] validate thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:48,207 | INFO     | [job] control thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:48,274 | INFO     | [data] control thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:48,375 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:48,420 | INFO     | [data] copytool_in thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:48,423 | INFO     | [payload] control thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:48,522 | INFO     | [data] copytool_out thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:48,699 | INFO     | [payload] validate_post thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:48,848 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:58:49,776 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 12:02:21] 2026-02-28 10:58:53,785 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 12:02:21] 2026-02-28 10:59:18,185 | INFO     | PID=3137646 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-28 12:02:21] 2026-02-28 10:59:18,185 | INFO     | .. there are 41 such processes running
[2026-02-28 12:02:21] 2026-02-28 10:59:18,187 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 12:02:21] 2026-02-28 10:59:18,187 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 12:02:21] 2026-02-28 10:59:18,187 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 12:02:21] 2026-02-28 10:59:36,227 | INFO     | [monitor] cgroup control has ended
[2026-02-28 12:02:21] 2026-02-28 10:59:37,596 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393813038912)>', '<ExcThread(monitor, started 140393286989568)>']
[2026-02-28 12:02:21] 2026-02-28 10:59:38,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 12:02:21] 2026-02-28 10:59:38,316 | INFO     | [monitor] control thread has ended
[2026-02-28 12:02:21] 2026-02-28 10:59:42,622 | INFO     | all workflow threads have been joined
[2026-02-28 12:02:21] 2026-02-28 10:59:42,622 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 12:02:21] 2026-02-28 10:59:42,623 | INFO     | traces error code: 0
[2026-02-28 12:02:21] 2026-02-28 10:59:42,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 12:02:21] 2026-02-28 10:59:43,090 [wrapper] ==== pilot stdout END ====
[2026-02-28 12:02:21] 2026-02-28 10:59:43,123 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 12:02:21] 2026-02-28 10:59:43,162 [wrapper] pilotpid: 3137646
[2026-02-28 12:02:21] 2026-02-28 10:59:43,202 [wrapper] Pilot exit status: 0
[2026-02-28 12:02:21] 2026-02-28 10:59:43,359 [wrapper] pandaids: 7031579478
[2026-02-28 12:02:21] 2026-02-28 10:59:43,931 [wrapper] cleanup supervisor_pilot 3251198 3137647
[2026-02-28 12:02:21] 2026-02-28 10:59:43,965 [wrapper] Test setup, not cleaning
[2026-02-28 12:02:21] 2026-02-28 10:59:44,002 [wrapper] apfmon messages muted
[2026-02-28 12:02:21] 2026-02-28 10:59:44,042 [wrapper] ==== wrapper stdout END ====
[2026-02-28 12:02:21] 2026-02-28 10:59:44,047 [wrapper] ==== wrapper stderr END ====
[2026-02-28 12:02:21]  *** Error codes and diagnostics ***
[2026-02-28 12:02:21]     "exeErrorCode": 0,
[2026-02-28 12:02:21]     "exeErrorDiag": "",
[2026-02-28 12:02:21]     "pilotErrorCode": 0,
[2026-02-28 12:02:21]     "pilotErrorDiag": "",
[2026-02-28 12:02:21]  *** Listing of results directory ***
[2026-02-28 12:02:21] total 456168
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc    584627 Feb 27 15:37 pilot3.tar.gz
[2026-02-28 12:02:21] -rwx------ 1 boinc boinc     36322 Feb 27 15:39 runpilot2-wrapper.sh
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc      5111 Feb 27 15:41 queuedata.json
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc       100 Feb 28 10:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 12:02:21] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 10:26 run_atlas
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc       105 Feb 28 10:26 job.xml
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc      6676 Feb 28 10:26 init_data.xml
[2026-02-28 12:02:21] -rw-r--r-- 2 boinc boinc 266774383 Feb 28 10:26 EVNT.48450696._000003.pool.root.1
[2026-02-28 12:02:21] drwxrwx--x 2 boinc boinc      4096 Feb 28 10:26 shared
[2026-02-28 12:02:21] -rw-r--r-- 2 boinc boinc    597977 Feb 28 10:26 input.tar.gz
[2026-02-28 12:02:21] -rw-r--r-- 2 boinc boinc     15845 Feb 28 10:26 start_atlas.sh
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc         0 Feb 28 10:26 boinc_lockfile
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc      2619 Feb 28 10:31 pandaJob.out
[2026-02-28 12:02:21] -rw------- 1 boinc boinc    998790 Feb 28 10:32 agis_schedconf.cvmfs.json
[2026-02-28 12:02:21] -rw------- 1 boinc boinc   1513015 Feb 28 10:32 agis_ddmendpoints.agis.ALL.json
[2026-02-28 12:02:21] -rw------- 1 boinc boinc       435 Feb 28 10:32 workernode_map.json
[2026-02-28 12:02:21] drwx------ 5 boinc boinc      4096 Feb 28 10:32 pilot3
[2026-02-28 12:02:21] -rw------- 1 boinc boinc 194178117 Feb 28 11:57 HITS.48843316._000067.pool.root.1
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc       529 Feb 28 11:57 boinc_task_state.xml
[2026-02-28 12:02:21] -rw------- 1 boinc boinc      1021 Feb 28 11:58 memory_monitor_summary.json
[2026-02-28 12:02:21] -rw------- 1 boinc boinc    396572 Feb 28 11:58 log.48843316._000067.job.log.tgz.1
[2026-02-28 12:02:21] -rw------- 1 boinc boinc      6330 Feb 28 11:58 heartbeat.json
[2026-02-28 12:02:21] -rw------- 1 boinc boinc        95 Feb 28 11:59 pilot_heartbeat.json
[2026-02-28 12:02:21] -rw------- 1 boinc boinc      4823 Feb 28 11:59 pilotlog.txt
[2026-02-28 12:02:21] -rw------- 1 boinc boinc    719244 Feb 28 11:59 log.48843316._000067.job.log.1
[2026-02-28 12:02:21] -rw------- 1 boinc boinc       357 Feb 28 11:59 output.list
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc       620 Feb 28 11:59 runtime_log
[2026-02-28 12:02:21] -rw------- 1 boinc boinc   1136640 Feb 28 11:59 result.tar.gz
[2026-02-28 12:02:21] -rw------- 1 boinc boinc       663 Feb 28 11:59 uDfMDmaBEG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmAM3KDmCpTbMm.diag
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc      8879 Feb 28 11:59 runtime_log.err
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc        26 Feb 28 12:02 wrapper_checkpoint.txt
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc      8192 Feb 28 12:02 boinc_mmap_file
[2026-02-28 12:02:21] -rw-r--r-- 1 boinc boinc     21554 Feb 28 12:02 stderr.txt
[2026-02-28 12:02:21] HITS file was successfully produced:
[2026-02-28 12:02:21] -rw------- 1 boinc boinc 194178117 Feb 28 11:57 shared/HITS.pool.root.1
[2026-02-28 12:02:21]  *** Contents of shared directory: ***
[2026-02-28 12:02:21] total 451872
[2026-02-28 12:02:21] -rw-r--r-- 2 boinc boinc 266774383 Feb 28 10:26 ATLAS.root_0
[2026-02-28 12:02:21] -rw-r--r-- 2 boinc boinc    597977 Feb 28 10:26 input.tar.gz
[2026-02-28 12:02:21] -rw-r--r-- 2 boinc boinc     15845 Feb 28 10:26 start_atlas.sh
[2026-02-28 12:02:21] -rw------- 1 boinc boinc 194178117 Feb 28 11:57 HITS.pool.root.1
[2026-02-28 12:02:21] -rw------- 1 boinc boinc   1136640 Feb 28 11:59 result.tar.gz
12:02:23 (3111344): run_atlas exited; CPU time 41534.473151
12:02:23 (3111344): called boinc_finish(0)

</stderr_txt>
]]>

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