Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:23:27 (640335): wrapper (7.7.26015): starting
07:23:27 (640335): wrapper: running run_atlas (--nthreads 4)
[2026-02-28 07:23:27] Arguments: --nthreads 4
[2026-02-28 07:23:27] Threads: 4
[2026-02-28 07:23:27] Checking for CVMFS
[2026-02-28 07:23:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 07:23:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 07:23:28] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 07:23:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 07:23:28] 2.9.2.0 37745 3754 92580 156723 2 49 29280261 36864000 0 130560 0 1681758 99.980 163075 18155 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 07:23:28] CVMFS is ok
[2026-02-28 07:23:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 07:23:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 07:23:28] Further information can be found at the LHC@home message board.
[2026-02-28 07:23:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 07:23:28] Checking for apptainer binary...
[2026-02-28 07:23:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 07:23:28] Running /usr/bin/apptainer --version
[2026-02-28 07:23:28] apptainer version 1.4.1-1.1
[2026-02-28 07:23:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 07:23:28] thA314a
[2026-02-28 07:23:28] apptainer works
[2026-02-28 07:23:28] Set ATHENA_PROC_NUMBER=4
[2026-02-28 07:23:28] Set ATHENA_CORE_NUMBER=4
[2026-02-28 07:23:28] Starting ATLAS job with PandaID=7031564979
[2026-02-28 07:23:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 08:45:08]  *** The last 200 lines of the pilot log: ***
[2026-02-28 08:45:08] 2026-02-28 07:44:36,965 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 08:45:08] 2026-02-28 07:44:36,965 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 08:45:08] 2026-02-28 07:44:36,965 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 08:45:08] 2026-02-28 07:44:36,965 | INFO     | job 7031564979 has completed (purged errors)
[2026-02-28 08:45:08] 2026-02-28 07:44:36,965 | INFO     | overall cleanup function is called
[2026-02-28 08:45:08] 2026-02-28 07:44:37,674 | WARNING  | process 648969 can no longer be monitored (due to stat problems) - aborting
[2026-02-28 08:45:08] 2026-02-28 07:44:37,704 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 08:45:08] 2026-02-28 07:44:37,741 | INFO     | number of running child processes to parent process 648969: 1
[2026-02-28 08:45:08] 2026-02-28 07:44:37,741 | INFO     | maximum number of monitored processes: 6
[2026-02-28 08:45:08] 2026-02-28 07:44:37,741 | INFO     | aborting job monitoring since job object (job id=7031564979) has expired
[2026-02-28 08:45:08] 2026-02-28 07:44:37,972 | INFO     | --- collectZombieJob: --- 10, [648969]
[2026-02-28 08:45:08] 2026-02-28 07:44:37,972 | INFO     | zombie collector waiting for pid 648969
[2026-02-28 08:45:08] 2026-02-28 07:44:37,972 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 08:45:08] 2026-02-28 07:44:37,972 | INFO     | collected zombie processes
[2026-02-28 08:45:08] 2026-02-28 07:44:37,972 | INFO     | will attempt to kill all subprocesses of pid=648969
[2026-02-28 08:45:08] 2026-02-28 07:44:38,012 | INFO     | process IDs to be killed: [648969] (in reverse order)
[2026-02-28 08:45:08] 2026-02-28 07:44:38,044 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 08:45:08] 2026-02-28 07:44:38,044 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 08:45:08] 2026-02-28 07:44:38,046 | INFO     | did not find any defunct processes belonging to 648969
[2026-02-28 08:45:08] 2026-02-28 07:44:38,047 | INFO     | did not find any defunct processes belonging to 648969
[2026-02-28 08:45:08] 2026-02-28 07:44:38,047 | INFO     | ready for new job
[2026-02-28 08:45:08] 2026-02-28 07:44:38,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 08:45:08] 2026-02-28 07:44:38,048 | INFO     | **************************************
[2026-02-28 08:45:08] 2026-02-28 07:44:38,048 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 08:45:08] 2026-02-28 07:44:38,048 | INFO     | **************************************
[2026-02-28 08:45:08] 2026-02-28 07:44:38,048 | INFO     | 
[2026-02-28 08:45:08] 2026-02-28 07:44:38,048 | INFO     | architecture information:
[2026-02-28 08:45:08] 2026-02-28 07:44:38,049 | INFO     | executing command: cat /etc/os-release
[2026-02-28 08:45:08] 2026-02-28 07:44:38,062 | INFO     | cat /etc/os-release:
[2026-02-28 08:45:08] NAME="CentOS Linux"
[2026-02-28 08:45:08] VERSION="7 (Core)"
[2026-02-28 08:45:08] ID="centos"
[2026-02-28 08:45:08] ID_LIKE="rhel fedora"
[2026-02-28 08:45:08] VERSION_ID="7"
[2026-02-28 08:45:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 08:45:08] ANSI_COLOR="0;31"
[2026-02-28 08:45:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 08:45:08] HOME_URL="https://www.centos.org/"
[2026-02-28 08:45:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 08:45:08] 
[2026-02-28 08:45:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 08:45:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 08:45:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 08:45:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 08:45:08] 
[2026-02-28 08:45:08] 2026-02-28 07:44:38,062 | INFO     | **************************************
[2026-02-28 08:45:08] 2026-02-28 07:44:38,565 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 08:45:08] 2026-02-28 07:44:38,581 | INFO     | sufficient remaining disk space (229389631488 B)
[2026-02-28 08:45:08] 2026-02-28 07:44:38,581 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 08:45:08] 2026-02-28 07:44:38,581 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 08:45:08] 2026-02-28 07:44:38,581 | INFO     | update_server=False
[2026-02-28 08:45:08] 2026-02-28 07:44:38,581 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 08:45:08] 2026-02-28 07:44:38,581 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 08:45:08] 2026-02-28 07:44:38,581 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 08:45:08] 2026-02-28 07:44:38,581 | INFO     | will abort loop
[2026-02-28 08:45:08] 2026-02-28 07:44:38,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 08:45:08] 2026-02-28 07:44:38,610 | INFO     | all job control threads have been joined
[2026-02-28 08:45:08] 2026-02-28 07:44:38,958 | INFO     | all data control threads have been joined
[2026-02-28 08:45:08] 2026-02-28 07:44:39,587 | INFO     | [job] retrieve thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:39,587 | INFO     | [job] job monitor thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:39,587 | INFO     | [job] queue monitor thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:39,615 | INFO     | [job] control thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:39,633 | INFO     | [data] copytool_in thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:39,680 | INFO     | all payload control threads have been joined
[2026-02-28 08:45:08] 2026-02-28 07:44:39,876 | INFO     | [payload] failed_post thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:39,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 08:45:08] 2026-02-28 07:44:39,963 | INFO     | [data] control thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:40,250 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:40,488 | INFO     | [payload] validate_post thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:40,686 | INFO     | [payload] control thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:40,846 | INFO     | [job] validate thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:40,894 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:41,019 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:41,888 | INFO     | [data] copytool_out thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:42,588 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:45,126 | INFO     | [monitor] cgroup control has ended
[2026-02-28 08:45:08] 2026-02-28 07:44:49,215 | INFO     | job.realtimelogging is not enabled
[2026-02-28 08:45:08] 2026-02-28 07:44:50,221 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 08:45:08] 2026-02-28 07:44:50,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140162061690688)>', '<ExcThread(monitor, started 140161207752448)>']
[2026-02-28 08:45:08] 2026-02-28 07:44:55,380 | INFO     | all workflow threads have been joined
[2026-02-28 08:45:08] 2026-02-28 07:44:55,381 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 08:45:08] 2026-02-28 07:44:55,381 | INFO     | traces error code: 0
[2026-02-28 08:45:08] 2026-02-28 07:44:55,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 08:45:08] 2026-02-28 07:45:08,696 | INFO     | PID=644457 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 08:45:08] 2026-02-28 07:45:08,696 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 08:45:08] 2026-02-28 07:45:08,696 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 08:45:08] 2026-02-28 07:45:08,697 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 08:45:08] 2026-02-28 07:45:08,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 08:45:08] 2026-02-28 07:45:08,697 | INFO     | [monitor] control thread has ended
[2026-02-28 08:45:08] 2026-02-28 07:45:08,760 [wrapper] ==== pilot stdout END ====
[2026-02-28 08:45:08] 2026-02-28 07:45:08,764 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 08:45:08] 2026-02-28 07:45:08,767 [wrapper] pilotpid: 644457
[2026-02-28 08:45:08] 2026-02-28 07:45:08,772 [wrapper] Pilot exit status: 0
[2026-02-28 08:45:08] 2026-02-28 07:45:08,783 [wrapper] pandaids: 7031564979
[2026-02-28 08:45:08] 2026-02-28 07:45:08,803 [wrapper] cleanup supervisor_pilot  654503 644458
[2026-02-28 08:45:08] 2026-02-28 07:45:08,806 [wrapper] Test setup, not cleaning
[2026-02-28 08:45:08] 2026-02-28 07:45:08,810 [wrapper] apfmon messages muted
[2026-02-28 08:45:08] 2026-02-28 07:45:08,814 [wrapper] ==== wrapper stdout END ====
[2026-02-28 08:45:08] 2026-02-28 07:45:08,817 [wrapper] ==== wrapper stderr END ====
[2026-02-28 08:45:08]  *** Error codes and diagnostics ***
[2026-02-28 08:45:08]     "exeErrorCode": 0,
[2026-02-28 08:45:08]     "exeErrorDiag": "",
[2026-02-28 08:45:08]     "pilotErrorCode": 0,
[2026-02-28 08:45:08]     "pilotErrorDiag": "",
[2026-02-28 08:45:08]  *** Listing of results directory ***
[2026-02-28 08:45:08] total 473108
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc    584627 Feb 27 15:37 pilot3.tar.gz
[2026-02-28 08:45:08] -rwx------ 1 boinc boinc     36322 Feb 27 15:39 runpilot2-wrapper.sh
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc      5111 Feb 27 15:40 queuedata.json
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc       100 Feb 28 07:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 08:45:08] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 07:23 run_atlas
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc       105 Feb 28 07:23 job.xml
[2026-02-28 08:45:08] -rw-r--r-- 2 boinc boinc 272755772 Feb 28 07:23 EVNT.48343789._000074.pool.root.1
[2026-02-28 08:45:08] -rw-r--r-- 2 boinc boinc    597970 Feb 28 07:23 input.tar.gz
[2026-02-28 08:45:08] -rw-r--r-- 2 boinc boinc     15845 Feb 28 07:23 start_atlas.sh
[2026-02-28 08:45:08] drwxrwx--x 2 boinc boinc      4096 Feb 28 07:23 shared
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc         0 Feb 28 07:23 boinc_setup_complete
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc      6370 Feb 28 07:23 init_data.xml
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc         0 Feb 28 07:23 boinc_lockfile
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc      2567 Feb 28 07:23 pandaJob.out
[2026-02-28 08:45:08] -rw------- 1 boinc boinc    998790 Feb 28 07:23 agis_schedconf.cvmfs.json
[2026-02-28 08:45:08] -rw------- 1 boinc boinc   1513015 Feb 28 07:23 agis_ddmendpoints.agis.ALL.json
[2026-02-28 08:45:08] -rw------- 1 boinc boinc       421 Feb 28 07:23 workernode_map.json
[2026-02-28 08:45:08] drwx------ 5 boinc boinc      4096 Feb 28 07:23 pilot3
[2026-02-28 08:45:08] -rw------- 1 boinc boinc 205842259 Feb 28 08:44 HITS.48838615._001840.pool.root.1
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc       529 Feb 28 08:44 boinc_task_state.xml
[2026-02-28 08:45:08] -rw------- 1 boinc boinc      1019 Feb 28 08:44 memory_monitor_summary.json
[2026-02-28 08:45:08] -rw------- 1 boinc boinc    262549 Feb 28 08:44 log.48838615._001840.job.log.tgz.1
[2026-02-28 08:45:08] -rw------- 1 boinc boinc      6308 Feb 28 08:44 heartbeat.json
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc      8192 Feb 28 08:44 boinc_mmap_file
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc        27 Feb 28 08:44 wrapper_checkpoint.txt
[2026-02-28 08:45:08] -rw------- 1 boinc boinc       746 Feb 28 08:45 pilotlog.txt
[2026-02-28 08:45:08] -rw------- 1 boinc boinc        95 Feb 28 08:45 pilot_heartbeat.json
[2026-02-28 08:45:08] -rw------- 1 boinc boinc    712012 Feb 28 08:45 log.48838615._001840.job.log.1
[2026-02-28 08:45:08] -rw------- 1 boinc boinc       357 Feb 28 08:45 output.list
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc       620 Feb 28 08:45 runtime_log
[2026-02-28 08:45:08] -rw------- 1 boinc boinc    993280 Feb 28 08:45 result.tar.gz
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc      8901 Feb 28 08:45 runtime_log.err
[2026-02-28 08:45:08] -rw------- 1 boinc boinc       658 Feb 28 08:45 dEKKDmABEG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmFH3KDmeFwtEm.diag
[2026-02-28 08:45:08] -rw-r--r-- 1 boinc boinc     11823 Feb 28 08:45 stderr.txt
[2026-02-28 08:45:08] HITS file was successfully produced:
[2026-02-28 08:45:08] -rw------- 1 boinc boinc 205842259 Feb 28 08:44 shared/HITS.pool.root.1
[2026-02-28 08:45:08]  *** Contents of shared directory: ***
[2026-02-28 08:45:08] total 468964
[2026-02-28 08:45:08] -rw-r--r-- 2 boinc boinc 272755772 Feb 28 07:23 ATLAS.root_0
[2026-02-28 08:45:08] -rw-r--r-- 2 boinc boinc    597970 Feb 28 07:23 input.tar.gz
[2026-02-28 08:45:08] -rw-r--r-- 2 boinc boinc     15845 Feb 28 07:23 start_atlas.sh
[2026-02-28 08:45:08] -rw------- 1 boinc boinc 205842259 Feb 28 08:44 HITS.pool.root.1
[2026-02-28 08:45:08] -rw------- 1 boinc boinc    993280 Feb 28 08:45 result.tar.gz
08:45:10 (640335): run_atlas exited; CPU time 18422.671828
08:45:10 (640335): called boinc_finish(0)

</stderr_txt>
]]>

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