Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:31:46 (538810): wrapper (7.7.26015): starting
15:31:46 (538810): wrapper: running run_atlas (--nthreads 12)
[2026-02-27 15:31:46] Arguments: --nthreads 12
[2026-02-27 15:31:46] Threads: 12
[2026-02-27 15:31:46] Checking for CVMFS
[2026-02-27 15:31:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 15:31:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 15:31:46] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 15:31:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 15:31:47] 2.11.5.0 1186366 127790 213208 156713 1 203 38527727 45568000 24361 130560 0 1138399001 99.799 692865396 24691 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-02-27 15:31:47] CVMFS is ok
[2026-02-27 15:31:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 15:31:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 15:31:47] Further information can be found at the LHC@home message board.
[2026-02-27 15:31:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 15:31:47] Checking for apptainer binary...
[2026-02-27 15:31:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 15:31:47] Running /usr/bin/apptainer --version
[2026-02-27 15:31:47] apptainer version 1.4.1-1.el9
[2026-02-27 15:31:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 15:31:48] wns0062.triumf.lcg
[2026-02-27 15:31:48] apptainer works
[2026-02-27 15:31:48] Set ATHENA_PROC_NUMBER=12
[2026-02-27 15:31:48] Set ATHENA_CORE_NUMBER=12
[2026-02-27 15:31:48] Starting ATLAS job with PandaID=7031968651
[2026-02-27 15:31:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 15:37:16]  *** The last 200 lines of the pilot log: ***
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | WARNING  | wrong length of table data, x=[1772235243.0], y=[1482.0] (must be same and length>=4)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | could have reported an average CPU frequency of 2646 MHz (4 samples)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | ..............................
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . Timing measurements:
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . get job = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . initial setup = 29 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . payload setup = 33 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . stage-in = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . payload execution = 64 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . stage-out = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . log creation = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | ..............................
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7031968651/pilotlog.txt
[2026-02-27 15:37:16] 2026-02-27 23:36:41,117 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-02-27 15:37:16] - Log from pilotlog.txt -
[2026-02-27 15:37:16] 2026-02-27 23:36:41,029 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7031968651/memory_monitor_summary.json (trf name=prmon)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | INFO     | extracted standard info from prmon json
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | INFO     | extracted standard memory fields from prmon json
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | WARNING  | wrong length of table data, x=[1772235243.0], y=[1482.0] (must be same and length>=4)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | could have reported an average CPU frequency of 2646 MHz (4 samples)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | ..............................
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . Timing measurements:
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . get job = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . initial setup = 29 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . payload setup = 33 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . stage-in = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . payload execution = 64 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . stage-out = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . log creation = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | ..............................
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7031968651/pilotlog.txt
[2026-02-27 15:37:16] 2026-02-27 23:36:41,117 | WARNING  | 
[2026-02-27 15:37:16] [begin log extracts]
[2026-02-27 15:37:16] - Log from pilotlog.txt -
[2026-02-27 15:37:16] 2026-02-27 23:36:41,029 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7031968651/memory_monitor_summary.json (trf name=prmon)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | INFO     | extracted standard info from prmon json
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | INFO     | extracted standard memory fields from prmon json
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-27 15:37:16] 2026-02-27 23:36:41,030 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | WARNING  | wrong length of table data, x=[1772235243.0], y=[1482.0] (must be same and length>=4)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | could have reported an average CPU frequency of 2646 MHz (4 samples)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | ..............................
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . Timing measurements:
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . get job = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . initial setup = 29 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . payload setup = 33 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . stage-in = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . payload execution = 64 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . stage-out = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | . log creation = 0 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | ..............................
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-27 15:37:16] 2026-02-27 23:36:41,031 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7031968651/pilotlog.txt
[2026-02-27 15:37:16] [end log extracts]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,117 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,118 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-02-27 15:37:16] 2026-02-27 23:36:41,734 | INFO     | 
[2026-02-27 15:37:16] 2026-02-27 23:36:41,734 | INFO     | job summary report
[2026-02-27 15:37:16] 2026-02-27 23:36:41,734 | INFO     | --------------------------------------------------
[2026-02-27 15:37:16] 2026-02-27 23:36:41,734 | INFO     | PanDA job id: 7031968651
[2026-02-27 15:37:16] 2026-02-27 23:36:41,734 | INFO     | task id: 48838605
[2026-02-27 15:37:16] 2026-02-27 23:36:41,734 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-02-27 15:34:29,166 CRITICAL Transform executor raised TransformValidationExceptio
[2026-02-27 15:37:16] 2026-02-27 23:36:41,734 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-27 15:37:16] 2026-02-27 23:36:41,734 | INFO     | pilot state: failed 
[2026-02-27 15:37:16] 2026-02-27 23:36:41,734 | INFO     | transexitcode: 65
[2026-02-27 15:37:16] 2026-02-27 23:36:41,734 | INFO     | exeerrorcode: 65
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | exitcode: 65
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | cpuconsumptiontime: 15 s
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | nevents: 0
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | neventsw: 0
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | pid: 547443
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | pgrp: 547443
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | corecount: 12
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | event service: False
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | sizes: {0: 2281732, 1: 2281816, 2: 2282277, 13: 2282277, 101: 2305590, 102: 2305566, 103: 2310014, 107: 2310042, 224: 2310208}
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | --------------------------------------------------
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | 
[2026-02-27 15:37:16] 2026-02-27 23:36:41,735 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-02-27 15:37:16] 2026-02-27 23:36:41,816 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,816 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,816 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,816 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 15:37:16] 2026-02-27 23:36:41,817 | INFO     | job 7031968651 has completed (purged errors)
[2026-02-27 15:37:16] 2026-02-27 23:36:41,818 | INFO     | overall cleanup function is called
[2026-02-27 15:37:16] 2026-02-27 23:36:42,824 | INFO     | --- collectZombieJob: --- 10, [547443]
[2026-02-27 15:37:16] 2026-02-27 23:36:42,824 | INFO     | zombie collector waiting for pid 547443
[2026-02-27 15:37:16] 2026-02-27 23:36:42,824 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 15:37:16] 2026-02-27 23:36:42,824 | INFO     | collected zombie processes
[2026-02-27 15:37:16] 2026-02-27 23:36:42,824 | INFO     | will attempt to kill all subprocesses of pid=547443
[2026-02-27 15:37:16] 2026-02-27 23:36:43,529 | INFO     | process IDs to be killed: [547443] (in reverse order)
[2026-02-27 15:37:16] 2026-02-27 23:36:43,632 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 15:37:16] 2026-02-27 23:36:43,633 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 15:37:16] 2026-02-27 23:36:43,691 | INFO     | did not find any defunct processes belonging to 547443
[2026-02-27 15:37:16] 2026-02-27 23:36:43,723 | INFO     | did not find any defunct processes belonging to 547443
[2026-02-27 15:37:16] 2026-02-27 23:36:43,723 | INFO     | ready for new job
[2026-02-27 15:37:16] 2026-02-27 23:36:43,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 15:37:16] 2026-02-27 23:36:43,748 | INFO     | **************************************
[2026-02-27 15:37:16] 2026-02-27 23:36:43,748 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 15:37:16] 2026-02-27 23:36:43,748 | INFO     | **************************************
[2026-02-27 15:37:16] 2026-02-27 23:36:43,748 | INFO     | 
[2026-02-27 15:37:16] 2026-02-27 23:36:43,750 | INFO     | architecture information:
[2026-02-27 15:37:16] 2026-02-27 23:36:43,757 | INFO     | executing command: cat /etc/os-release
[2026-02-27 15:37:16] 2026-02-27 23:36:43,873 | INFO     | cat /etc/os-release:
[2026-02-27 15:37:16] NAME="CentOS Linux"
[2026-02-27 15:37:16] VERSION="7 (Core)"
[2026-02-27 15:37:16] ID="centos"
[2026-02-27 15:37:16] ID_LIKE="rhel fedora"
[2026-02-27 15:37:16] VERSION_ID="7"
[2026-02-27 15:37:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 15:37:16] ANSI_COLOR="0;31"
[2026-02-27 15:37:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 15:37:16] HOME_URL="https://www.centos.org/"
[2026-02-27 15:37:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 15:37:16] 
[2026-02-27 15:37:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 15:37:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 15:37:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 15:37:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 15:37:16] 
[2026-02-27 15:37:16] 2026-02-27 23:36:43,874 | INFO     | **************************************
[2026-02-27 15:37:16] 2026-02-27 23:36:44,376 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-02-27 15:37:16] 2026-02-27 23:36:44,442 | INFO     | sufficient remaining disk space (1759221121024 B)
[2026-02-27 15:37:16] 2026-02-27 23:36:44,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 15:37:16] 2026-02-27 23:36:44,443 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 15:37:16] 2026-02-27 23:36:44,443 | INFO     | update_server=False
[2026-02-27 15:37:16] 2026-02-27 23:36:44,443 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 15:37:16] 2026-02-27 23:36:44,445 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 15:37:16] 2026-02-27 23:36:44,469 | INFO     | [monitor] cgroup control has ended
[2026-02-27 15:37:16] 2026-02-27 23:36:44,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 15:37:16] 2026-02-27 23:36:44,657 | INFO     | all payload control threads have been joined
[2026-02-27 15:37:16] 2026-02-27 23:36:45,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 15:37:16] 2026-02-27 23:36:45,029 | INFO     | aborting loop
[2026-02-27 15:37:16] 2026-02-27 23:36:45,276 | INFO     | all job control threads have been joined
[2026-02-27 15:37:16] 2026-02-27 23:36:45,449 | INFO     | [job] retrieve thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:45,461 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:45,519 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:45,553 | INFO     | all data control threads have been joined
[2026-02-27 15:37:16] 2026-02-27 23:36:45,662 | INFO     | [payload] control thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:45,781 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:45,873 | INFO     | [payload] validate_post thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:46,035 | INFO     | [job] job monitor thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:46,282 | INFO     | [job] control thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:46,416 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:46,454 | INFO     | [data] copytool_in thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:46,559 | INFO     | [data] control thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:46,583 | INFO     | [data] copytool_out thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:46,634 | INFO     | [payload] failed_post thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:46,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 15:37:16] 2026-02-27 23:36:46,909 | INFO     | [job] validate thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:47,734 | INFO     | [job] queue monitor thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:48,454 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 15:37:16] 2026-02-27 23:36:48,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140573063132992)>', '<ExcThread(monitor, started 140572509587200)>']
[2026-02-27 15:37:16] 2026-02-27 23:36:54,011 | INFO     | all workflow threads have been joined
[2026-02-27 15:37:16] 2026-02-27 23:36:54,011 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 15:37:16] 2026-02-27 23:36:54,011 | INFO     | traces error code: 0
[2026-02-27 15:37:16] 2026-02-27 23:36:54,011 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 15:37:16] 2026-02-27 23:37:14,705 | INFO     | PID=542579 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-27 15:37:16] 2026-02-27 23:37:14,706 | INFO     | .. there are 42 such processes running
[2026-02-27 15:37:16] 2026-02-27 23:37:14,706 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 15:37:16] 2026-02-27 23:37:14,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 15:37:16] 2026-02-27 23:37:14,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 15:37:16] 2026-02-27 23:37:14,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 15:37:16] 2026-02-27 23:37:14,706 | CRITICAL | thread 'MainThread' is not alive
[2026-02-27 15:37:16] 2026-02-27 23:37:14,706 | INFO     | [monitor] control thread has ended
[2026-02-27 15:37:16] 2026-02-27 23:37:15,171 [wrapper] ==== pilot stdout END ====
[2026-02-27 15:37:16] 2026-02-27 23:37:15,193 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 15:37:16] 2026-02-27 23:37:15,204 [wrapper] pilotpid: 542579
[2026-02-27 15:37:16] 2026-02-27 23:37:15,209 [wrapper] Pilot exit status: 0
[2026-02-27 15:37:16] 2026-02-27 23:37:15,358 [wrapper] pandaids: 7031968651
[2026-02-27 15:37:16] 2026-02-27 23:37:15,986 [wrapper] cleanup supervisor_pilot  542585 542580
[2026-02-27 15:37:16] 2026-02-27 23:37:16,038 [wrapper] Test setup, not cleaning
[2026-02-27 15:37:16] 2026-02-27 23:37:16,053 [wrapper] apfmon messages muted
[2026-02-27 15:37:16] 2026-02-27 23:37:16,098 [wrapper] ==== wrapper stdout END ====
[2026-02-27 15:37:16] 2026-02-27 23:37:16,111 [wrapper] ==== wrapper stderr END ====
[2026-02-27 15:37:16]  *** Error codes and diagnostics ***
[2026-02-27 15:37:16]     "exeErrorCode": 65,
[2026-02-27 15:37:16]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-02-27 15:37:16]     "pilotErrorCode": 1305,
[2026-02-27 15:37:16]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-02-27 15:37:16]  *** Listing of results directory ***
[2026-02-27 15:37:16] total 281036
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc    584627 Feb 27 10:17 pilot3.tar.gz
[2026-02-27 15:37:16] -rwx------. 1 boinc boinc     36322 Feb 27 10:17 runpilot2-wrapper.sh
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc      5111 Feb 27 10:19 queuedata.json
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc       100 Feb 27 15:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 15:37:16] -rwxr-xr-x. 1 boinc boinc      7986 Feb 27 15:31 run_atlas
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc       105 Feb 27 15:31 job.xml
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc      6594 Feb 27 15:31 init_data.xml
[2026-02-27 15:37:16] -rw-r--r--. 2 boinc boinc 283634057 Feb 27 15:31 EVNT.48343768._000057.pool.root.1
[2026-02-27 15:37:16] -rw-r--r--. 2 boinc boinc     15845 Feb 27 15:31 start_atlas.sh
[2026-02-27 15:37:16] drwxrwx--x. 2 boinc boinc      4096 Feb 27 15:31 shared
[2026-02-27 15:37:16] -rw-r--r--. 2 boinc boinc    597967 Feb 27 15:31 input.tar.gz
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc         0 Feb 27 15:31 boinc_lockfile
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc      2563 Feb 27 15:31 pandaJob.out
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc    998790 Feb 27 15:32 agis_schedconf.cvmfs.json
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc   1513015 Feb 27 15:32 agis_ddmendpoints.agis.ALL.json
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc       439 Feb 27 15:32 workernode_map.json
[2026-02-27 15:37:16] drwx------. 5 boinc boinc      4096 Feb 27 15:32 pilot3
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc       951 Feb 27 15:34 memory_monitor_summary.json
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc     21487 Feb 27 15:34 log.48838605._001468.job.log.tgz.1
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc        95 Feb 27 15:36 pilot_heartbeat.json
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc      7030 Feb 27 15:36 heartbeat.json
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc       523 Feb 27 15:37 boinc_task_state.xml
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc       892 Feb 27 15:37 pilotlog.txt
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc        22 Feb 27 15:37 wrapper_checkpoint.txt
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc      8192 Feb 27 15:37 boinc_mmap_file
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc     88737 Feb 27 15:37 log.48838605._001468.job.log.1
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc       188 Feb 27 15:37 output.list
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc       620 Feb 27 15:37 runtime_log
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc    133120 Feb 27 15:37 result.tar.gz
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc       643 Feb 27 15:37 uHrKDmHaHG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmji3KDmkcz8Do.diag
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc      8635 Feb 27 15:37 runtime_log.err
[2026-02-27 15:37:16] -rw-r--r--. 1 boinc boinc     21732 Feb 27 15:37 stderr.txt
[2026-02-27 15:37:16] No HITS result produced
[2026-02-27 15:37:16]  *** Contents of shared directory: ***
[2026-02-27 15:37:16] total 277724
[2026-02-27 15:37:16] -rw-r--r--. 2 boinc boinc 283634057 Feb 27 15:31 ATLAS.root_0
[2026-02-27 15:37:16] -rw-r--r--. 2 boinc boinc     15845 Feb 27 15:31 start_atlas.sh
[2026-02-27 15:37:16] -rw-r--r--. 2 boinc boinc    597967 Feb 27 15:31 input.tar.gz
[2026-02-27 15:37:16] -rw-------. 1 boinc boinc    133120 Feb 27 15:37 result.tar.gz
15:37:18 (538810): run_atlas exited; CPU time 24.383090
15:37:18 (538810): called boinc_finish(0)

</stderr_txt>
]]>

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