Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:12:58 (180903): wrapper (7.7.26015): starting
17:12:58 (180903): wrapper: running run_atlas (--nthreads 12)
[2026-02-27 17:12:58] Arguments: --nthreads 12
[2026-02-27 17:12:58] Threads: 12
[2026-02-27 17:12:58] Checking for CVMFS
[2026-02-27 17:12:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 17:13:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 17:13:06] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 17:13:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 17:13:06] 2.13.3.0 67571 125 47692 156708 3 188 8927734 10240000 0 130560 0 270799 99.998 4129 503 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-27 17:13:06] CVMFS is ok
[2026-02-27 17:13:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 17:13:06] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-27 17:13:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-27 17:13:06] Further information can be found at the LHC@home message board.
[2026-02-27 17:13:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 17:13:06] Checking for apptainer binary...
[2026-02-27 17:13:06] apptainer is not installed, using version from CVMFS
[2026-02-27 17:13:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 17:13:06] pots
[2026-02-27 17:13:06] apptainer works
[2026-02-27 17:13:06] Set ATHENA_PROC_NUMBER=12
[2026-02-27 17:13:06] Set ATHENA_CORE_NUMBER=12
[2026-02-27 17:13:06] Starting ATLAS job with PandaID=7031389128
[2026-02-27 17:13:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/home/pepper/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 17:46:31]  *** The last 200 lines of the pilot log: ***
[2026-02-27 17:46:31]  surl=/home/pepper/slots/0/PanDA_Pilot-7031389128/log.48842776._000037.job.log.tgz.1
[2026-02-27 17:46:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/01/log.48842776._000037.job.log.tgz.1
[2026-02-27 17:46:31]  workdir=None
[2026-02-27 17:46:31] ]
[2026-02-27 17:46:31] 2026-02-27 22:45:44,198 | INFO     | transferring file log.48842776._000037.job.log.tgz.1 from /home/pepper/slots/0/PanDA_Pilot-7031389128/log.48842776._000037.job.log.tgz.1 to /home/pepper/slots/0/lo
[2026-02-27 17:46:31] 2026-02-27 22:45:44,198 | INFO     | executing command: /usr/bin/env mv /home/pepper/slots/0/PanDA_Pilot-7031389128/log.48842776._000037.job.log.tgz.1 /home/pepper/slots/0/log.48842776._000037.job.log
[2026-02-27 17:46:31] 2026-02-27 22:45:44,206 | INFO     | adding to output.list: log.48842776._000037.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/01/log.48842776._000037.job.log.tg
[2026-02-27 17:46:31] 2026-02-27 22:45:44,206 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-27 17:46:31] 2026-02-27 22:45:44,206 | INFO     | summary of transferred files:
[2026-02-27 17:46:31] 2026-02-27 22:45:44,206 | INFO     |  -- lfn=log.48842776._000037.job.log.tgz.1, status_code=0, status=transferred
[2026-02-27 17:46:31] 2026-02-27 22:45:44,207 | INFO     | stage-out finished correctly
[2026-02-27 17:46:31] 2026-02-27 22:45:44,729 | INFO     | time since job start (1949s) is within the limit (349056.0s)
[2026-02-27 17:46:31] 2026-02-27 22:45:46,632 | INFO     | monitor loop #153: job 0:7031389128 is in state 'finished'
[2026-02-27 17:46:31] 2026-02-27 22:45:46,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-27 17:46:31] 2026-02-27 22:45:46,735 | INFO     | time since job start (1951s) is within the limit (349056.0s)
[2026-02-27 17:46:31] 2026-02-27 22:45:47,442 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-27 17:46:31] 2026-02-27 22:45:48,519 | INFO     | job 7031389128 has state=finished
[2026-02-27 17:46:31] 2026-02-27 22:45:48,519 | INFO     | preparing for final server update for job 7031389128 in state='finished'
[2026-02-27 17:46:31] 2026-02-27 22:45:48,741 | INFO     | time since job start (1953s) is within the limit (349056.0s)
[2026-02-27 17:46:31] 2026-02-27 22:45:49,134 | INFO     | monitor loop #154: job 0:7031389128 is in state 'finished'
[2026-02-27 17:46:31] 2026-02-27 22:45:49,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-27 17:46:31] 2026-02-27 22:45:50,746 | INFO     | time since job start (1955s) is within the limit (349056.0s)
[2026-02-27 17:46:31] 2026-02-27 22:45:51,637 | INFO     | monitor loop #155: job 0:7031389128 is in state 'finished'
[2026-02-27 17:46:31] 2026-02-27 22:45:51,637 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-27 17:46:31] 2026-02-27 22:45:52,751 | INFO     | time since job start (1957s) is within the limit (349056.0s)
[2026-02-27 17:46:31] 2026-02-27 22:45:54,140 | INFO     | monitor loop #156: job 0:7031389128 is in state 'finished'
[2026-02-27 17:46:31] 2026-02-27 22:45:54,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-27 17:46:31] 2026-02-27 22:45:54,756 | INFO     | time since job start (1959s) is within the limit (349056.0s)
[2026-02-27 17:46:31] 2026-02-27 22:45:56,643 | INFO     | monitor loop #157: job 0:7031389128 is in state 'finished'
[2026-02-27 17:46:31] 2026-02-27 22:45:56,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-27 17:46:31] 2026-02-27 22:45:56,761 | INFO     | time since job start (1961s) is within the limit (349056.0s)
[2026-02-27 17:46:31] 2026-02-27 22:45:58,766 | INFO     | time since job start (1963s) is within the limit (349056.0s)
[2026-02-27 17:46:31] 2026-02-27 22:45:58,812 | WARNING  | exception caught in update_server(): The read operation timed out
[2026-02-27 17:46:31] 2026-02-27 22:45:58,812 | INFO     | reading metadata from: /home/pepper/slots/0/PanDA_Pilot-7031389128/jobReport.json
[2026-02-27 17:46:31] 2026-02-27 22:45:58,813 | INFO     | added worker_node to metadata from /home/pepper/slots/0/workernode_map.json
[2026-02-27 17:46:31] 2026-02-27 22:45:58,813 | INFO     | this job has now completed (state=finished)
[2026-02-27 17:46:31] 2026-02-27 22:45:58,813 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-27 17:46:31] 2026-02-27 22:45:58,813 | INFO     | log transfer has been attempted: DONE
[2026-02-27 17:46:31] 2026-02-27 22:45:58,813 | INFO     | job 7031389128 has finished - writing final server update
[2026-02-27 17:46:31] 2026-02-27 22:45:58,813 | INFO     | total number of processed events: 400 (read)
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | using path: /home/pepper/slots/0/PanDA_Pilot-7031389128/memory_monitor_summary.json (trf name=prmon)
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | extracted standard info from prmon json
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | extracted standard memory fields from prmon json
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | fitting pss+swap vs Time
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | sum of square deviations: 4837300.0
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | sum of deviations: 128472405.00000004
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | mean x: 1772231446.0
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | mean y: 2781308.16
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | intersect: -47065384008.07999
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | chi2: 7.645571178168004e-05
[2026-02-27 17:46:31] 2026-02-27 22:45:58,814 | INFO     | current memory leak: 26.56 B/s (using 25 data points, chi2=0.00)
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | could have reported an average CPU frequency of 4153 MHz (5 samples)
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | ..............................
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | . Timing measurements:
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | . get job = 0 s
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | . initial setup = 4 s
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | . payload setup = 1 s
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | . stage-in = 0 s
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | . payload execution = 1933 s
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | . stage-out = 0 s
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | . log creation = 0 s
[2026-02-27 17:46:31] 2026-02-27 22:45:58,815 | INFO     | ..............................
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | 
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | job summary report
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | --------------------------------------------------
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | PanDA job id: 7031389128
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | task id: 48842776
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | errors: (none)
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | pilot state: finished 
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | transexitcode: 0
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | exeerrorcode: 0
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | exeerrordiag: 
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | exitcode: 0
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | exitmsg: OK
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | cpuconsumptiontime: 20640 s
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | nevents: 400
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | neventsw: 0
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | pid: 189471
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | pgrp: 189471
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | corecount: 12
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | event service: False
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | sizes: {0: 2282407, 11: 2282407, 1938: 2316301, 1941: 2316301, 1953: 2316527}
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | --------------------------------------------------
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | 
[2026-02-27 17:46:31] 2026-02-27 22:45:59,290 | INFO     | executing command: ls -lF /home/pepper/slots/0
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | job 7031389128 has completed (purged errors)
[2026-02-27 17:46:31] 2026-02-27 22:45:59,306 | INFO     | overall cleanup function is called
[2026-02-27 17:46:31] 2026-02-27 22:46:00,312 | INFO     | --- collectZombieJob: --- 10, [189471]
[2026-02-27 17:46:31] 2026-02-27 22:46:00,312 | INFO     | zombie collector waiting for pid 189471
[2026-02-27 17:46:31] 2026-02-27 22:46:00,312 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 17:46:31] 2026-02-27 22:46:00,313 | INFO     | collected zombie processes
[2026-02-27 17:46:31] 2026-02-27 22:46:00,313 | INFO     | will attempt to kill all subprocesses of pid=189471
[2026-02-27 17:46:31] 2026-02-27 22:46:00,339 | INFO     | process IDs to be killed: [189471] (in reverse order)
[2026-02-27 17:46:31] 2026-02-27 22:46:00,380 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 17:46:31] 2026-02-27 22:46:00,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 17:46:31] 2026-02-27 22:46:00,381 | INFO     | did not find any defunct processes belonging to 189471
[2026-02-27 17:46:31] 2026-02-27 22:46:00,382 | INFO     | did not find any defunct processes belonging to 189471
[2026-02-27 17:46:31] 2026-02-27 22:46:00,382 | INFO     | ready for new job
[2026-02-27 17:46:31] 2026-02-27 22:46:00,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 17:46:31] 2026-02-27 22:46:00,383 | INFO     | **************************************
[2026-02-27 17:46:31] 2026-02-27 22:46:00,383 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 17:46:31] 2026-02-27 22:46:00,383 | INFO     | **************************************
[2026-02-27 17:46:31] 2026-02-27 22:46:00,383 | INFO     | 
[2026-02-27 17:46:31] 2026-02-27 22:46:00,383 | INFO     | architecture information:
[2026-02-27 17:46:31] 2026-02-27 22:46:00,383 | INFO     | executing command: cat /etc/os-release
[2026-02-27 17:46:31] 2026-02-27 22:46:00,389 | INFO     | cat /etc/os-release:
[2026-02-27 17:46:31] NAME="CentOS Linux"
[2026-02-27 17:46:31] VERSION="7 (Core)"
[2026-02-27 17:46:31] ID="centos"
[2026-02-27 17:46:31] ID_LIKE="rhel fedora"
[2026-02-27 17:46:31] VERSION_ID="7"
[2026-02-27 17:46:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 17:46:31] ANSI_COLOR="0;31"
[2026-02-27 17:46:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 17:46:31] HOME_URL="https://www.centos.org/"
[2026-02-27 17:46:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 17:46:31] 
[2026-02-27 17:46:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 17:46:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 17:46:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 17:46:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 17:46:31] 
[2026-02-27 17:46:31] 2026-02-27 22:46:00,389 | INFO     | **************************************
[2026-02-27 17:46:31] 2026-02-27 22:46:00,892 | INFO     | executing command: df -mP /home/pepper/slots/0
[2026-02-27 17:46:31] 2026-02-27 22:46:00,904 | INFO     | sufficient remaining disk space (476901801984 B)
[2026-02-27 17:46:31] 2026-02-27 22:46:00,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 17:46:31] 2026-02-27 22:46:00,905 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 17:46:31] 2026-02-27 22:46:00,905 | INFO     | update_server=False
[2026-02-27 17:46:31] 2026-02-27 22:46:00,905 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 17:46:31] 2026-02-27 22:46:00,905 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 17:46:31] 2026-02-27 22:46:00,905 | INFO     | aborting loop
[2026-02-27 17:46:31] 2026-02-27 22:46:01,269 | INFO     | all data control threads have been joined
[2026-02-27 17:46:31] 2026-02-27 22:46:01,910 | INFO     | [job] job monitor thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:01,910 | INFO     | [job] retrieve thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:01,960 | INFO     | all job control threads have been joined
[2026-02-27 17:46:31] 2026-02-27 22:46:02,053 | INFO     | all payload control threads have been joined
[2026-02-27 17:46:31] 2026-02-27 22:46:02,247 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 17:46:31] 2026-02-27 22:46:02,274 | INFO     | [data] control thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:02,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 17:46:31] 2026-02-27 22:46:02,568 | INFO     | [payload] validate_post thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:02,942 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:02,965 | INFO     | [job] control thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:03,058 | INFO     | [payload] control thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:03,307 | INFO     | [payload] failed_post thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:03,341 | INFO     | [job] validate thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:03,350 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:03,394 | INFO     | [data] copytool_in thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:03,395 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:03,842 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 17:46:31] 2026-02-27 22:46:04,252 | INFO     | [data] copytool_out thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:04,847 | INFO     | [job] queue monitor thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:06,480 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:11,456 | INFO     | job.realtimelogging is not enabled
[2026-02-27 17:46:31] 2026-02-27 22:46:12,461 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 17:46:31] 2026-02-27 22:46:18,344 | INFO     | [monitor] cgroup control has ended
[2026-02-27 17:46:31] 2026-02-27 22:46:20,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135738556106560)>', '<ExcThread(monitor, started 135737936701184)>']
[2026-02-27 17:46:31] 2026-02-27 22:46:25,446 | INFO     | all workflow threads have been joined
[2026-02-27 17:46:31] 2026-02-27 22:46:25,446 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 17:46:31] 2026-02-27 22:46:25,446 | INFO     | traces error code: 0
[2026-02-27 17:46:31] 2026-02-27 22:46:25,446 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 17:46:31] 2026-02-27 22:46:31,861 | INFO     | PID=184997 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-27 17:46:31] 2026-02-27 22:46:31,861 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 17:46:31] 2026-02-27 22:46:31,861 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 17:46:31] 2026-02-27 22:46:31,861 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 17:46:31] 2026-02-27 22:46:31,861 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 17:46:31] 2026-02-27 22:46:31,861 | INFO     | [monitor] control thread has ended
[2026-02-27 17:46:31] 2026-02-27 22:46:31,912 [wrapper] ==== pilot stdout END ====
[2026-02-27 17:46:31] 2026-02-27 22:46:31,914 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 17:46:31] 2026-02-27 22:46:31,915 [wrapper] pilotpid: 184997
[2026-02-27 17:46:31] 2026-02-27 22:46:31,916 [wrapper] Pilot exit status: 0
[2026-02-27 17:46:31] 2026-02-27 22:46:31,919 [wrapper] pandaids: 7031389128
[2026-02-27 17:46:31] 2026-02-27 22:46:31,930 [wrapper] cleanup supervisor_pilot  199422 184998
[2026-02-27 17:46:31] 2026-02-27 22:46:31,932 [wrapper] Test setup, not cleaning
[2026-02-27 17:46:31] 2026-02-27 22:46:31,933 [wrapper] apfmon messages muted
[2026-02-27 17:46:31] 2026-02-27 22:46:31,934 [wrapper] ==== wrapper stdout END ====
[2026-02-27 17:46:31] 2026-02-27 22:46:31,935 [wrapper] ==== wrapper stderr END ====
[2026-02-27 17:46:31]  *** Error codes and diagnostics ***
[2026-02-27 17:46:31]     "exeErrorCode": 0,
[2026-02-27 17:46:31]     "exeErrorDiag": "",
[2026-02-27 17:46:31]     "pilotErrorCode": 0,
[2026-02-27 17:46:31]     "pilotErrorDiag": "",
[2026-02-27 17:46:31]  *** Listing of results directory ***
[2026-02-27 17:46:31] total 566980
[2026-02-27 17:46:31] -rw-r--r-- 1 pepper pepper    584627 Feb 27 04:20 pilot3.tar.gz
[2026-02-27 17:46:31] -rwx------ 1 pepper pepper     36322 Feb 27 04:21 runpilot2-wrapper.sh
[2026-02-27 17:46:31] -rw-r--r-- 1 pepper pepper      5111 Feb 27 04:21 queuedata.json
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper       100 Feb 27 17:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 17:46:31] -rwxr-xr-x 1 pepper pepper      7986 Feb 27 17:12 run_atlas
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper       105 Feb 27 17:12 job.xml
[2026-02-27 17:46:31] -rw-r--r-- 2 pepper pepper 291708408 Feb 27 17:12 EVNT.48449259._000002.pool.root.1
[2026-02-27 17:46:31] -rw-r--r-- 2 pepper pepper    597993 Feb 27 17:12 input.tar.gz
[2026-02-27 17:46:31] -rw-r--r-- 2 pepper pepper     15845 Feb 27 17:12 start_atlas.sh
[2026-02-27 17:46:31] drwxrwx--x 2 pepper pepper      4096 Feb 27 17:12 shared
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper         0 Feb 27 17:12 boinc_setup_complete
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper      9050 Feb 27 17:12 init_data.xml
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper         0 Feb 27 17:12 boinc_lockfile
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper      2681 Feb 27 17:13 pandaJob.out
[2026-02-27 17:46:31] -rw------- 1 pepper pepper    998790 Feb 27 17:13 agis_schedconf.cvmfs.json
[2026-02-27 17:46:31] -rw------- 1 pepper pepper   1513015 Feb 27 17:13 agis_ddmendpoints.agis.ALL.json
[2026-02-27 17:46:31] -rw------- 1 pepper pepper       406 Feb 27 17:13 workernode_map.json
[2026-02-27 17:46:31] drwx------ 5 pepper pepper      4096 Feb 27 17:13 pilot3
[2026-02-27 17:46:31] -rw------- 1 pepper pepper 283609404 Feb 27 17:45 HITS.48842776._000037.pool.root.1
[2026-02-27 17:46:31] -rw------- 1 pepper pepper      1023 Feb 27 17:45 memory_monitor_summary.json
[2026-02-27 17:46:31] -rw------- 1 pepper pepper    349061 Feb 27 17:45 log.48842776._000037.job.log.tgz.1
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper       529 Feb 27 17:45 boinc_task_state.xml
[2026-02-27 17:46:31] -rw------- 1 pepper pepper      6262 Feb 27 17:45 heartbeat.json
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper      8192 Feb 27 17:46 boinc_mmap_file
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper        27 Feb 27 17:46 wrapper_checkpoint.txt
[2026-02-27 17:46:31] -rw------- 1 pepper pepper       746 Feb 27 17:46 pilotlog.txt
[2026-02-27 17:46:31] -rw------- 1 pepper pepper        95 Feb 27 17:46 pilot_heartbeat.json
[2026-02-27 17:46:31] -rw------- 1 pepper pepper    323374 Feb 27 17:46 log.48842776._000037.job.log.1
[2026-02-27 17:46:31] -rw------- 1 pepper pepper       357 Feb 27 17:46 output.list
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper       620 Feb 27 17:46 runtime_log
[2026-02-27 17:46:31] -rw------- 1 pepper pepper    686080 Feb 27 17:46 result.tar.gz
[2026-02-27 17:46:31] -rw------- 1 pepper pepper       641 Feb 27 17:46 YtmNDmCD9F9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmh4KDmb2kPTo.diag
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper      8728 Feb 27 17:46 runtime_log.err
[2026-02-27 17:46:31] -rw-rw-r-- 1 pepper pepper     22339 Feb 27 17:46 stderr.txt
[2026-02-27 17:46:31] HITS file was successfully produced:
[2026-02-27 17:46:31] -rw------- 1 pepper pepper 283609404 Feb 27 17:45 shared/HITS.pool.root.1
[2026-02-27 17:46:31]  *** Contents of shared directory: ***
[2026-02-27 17:46:31] total 563116
[2026-02-27 17:46:31] -rw-r--r-- 2 pepper pepper 291708408 Feb 27 17:12 ATLAS.root_0
[2026-02-27 17:46:31] -rw-r--r-- 2 pepper pepper    597993 Feb 27 17:12 input.tar.gz
[2026-02-27 17:46:31] -rw-r--r-- 2 pepper pepper     15845 Feb 27 17:12 start_atlas.sh
[2026-02-27 17:46:31] -rw------- 1 pepper pepper 283609404 Feb 27 17:45 HITS.pool.root.1
[2026-02-27 17:46:31] -rw------- 1 pepper pepper    686080 Feb 27 17:46 result.tar.gz
17:46:34 (180903): run_atlas exited; CPU time 20636.113767
17:46:34 (180903): called boinc_finish(0)

</stderr_txt>
]]>

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