Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:23:42 (138222): wrapper (7.7.26015): starting
11:23:42 (138222): wrapper: running run_atlas (--nthreads 10)
[2026-02-27 11:23:42] Arguments: --nthreads 10
[2026-02-27 11:23:42] Threads: 10
[2026-02-27 11:23:42] Checking for CVMFS
[2026-02-27 11:23:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 11:23:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 11:23:44] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 11:23:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 11:23:46] 2.13.3.0 15696 22863 219040 156702 0 290 28069246 32935936 29318 16776704 0 30415004 99.362 51455679 12485 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-27 11:23:46] CVMFS is ok
[2026-02-27 11:23:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 11:23:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 11:23:46] Further information can be found at the LHC@home message board.
[2026-02-27 11:23:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 11:23:46] Checking for apptainer binary...
[2026-02-27 11:23:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 11:23:47] Running /usr/bin/apptainer --version
[2026-02-27 11:23:47] apptainer version 1.4.5-2.el9
[2026-02-27 11:23:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 11:23:48] c6-12-25-2.aglt2.org
[2026-02-27 11:23:48] apptainer works
[2026-02-27 11:23:48] Set ATHENA_PROC_NUMBER=10
[2026-02-27 11:23:48] Set ATHENA_CORE_NUMBER=10
[2026-02-27 11:23:49] Starting ATLAS job with PandaID=7031389459
[2026-02-27 11:23:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:40:05 (138222): BOINC client no longer exists - exiting
13:40:05 (138222): timer handler: client dead, exiting
13:46:12 (563138): wrapper (7.7.26015): starting
13:46:12 (563138): wrapper: running run_atlas (--nthreads 8)
[2026-02-27 13:46:13] Arguments: --nthreads 8
[2026-02-27 13:46:13] Threads: 8
[2026-02-27 13:46:13] This job has been restarted, cleaning up previous attempt
[2026-02-27 13:46:13] Checking for CVMFS
[2026-02-27 13:46:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 13:46:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 13:46:15] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 13:46:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 13:46:17] 2.13.3.0 15696 23006 220416 156704 1 262 30030738 32935936 25232 16776704 0 30699956 99.367 51567506 12488 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-27 13:46:17] CVMFS is ok
[2026-02-27 13:46:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 13:46:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 13:46:17] Further information can be found at the LHC@home message board.
[2026-02-27 13:46:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 13:46:17] Checking for apptainer binary...
[2026-02-27 13:46:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 13:46:17] Running /usr/bin/apptainer --version
[2026-02-27 13:46:18] apptainer version 1.4.5-2.el9
[2026-02-27 13:46:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 13:46:20] c6-12-25-2.aglt2.org
[2026-02-27 13:46:20] apptainer works
[2026-02-27 13:46:20] Set ATHENA_PROC_NUMBER=8
[2026-02-27 13:46:20] Set ATHENA_CORE_NUMBER=8
[2026-02-27 13:46:20] Starting ATLAS job with PandaID=7031389459
[2026-02-27 13:46:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 12:32:51]  *** The last 200 lines of the pilot log: ***
[2026-02-28 12:32:51] 2026-02-28 17:32:09,390 | INFO     | extracted standard memory fields from prmon json
[2026-02-28 12:32:51] 2026-02-28 17:32:09,390 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-28 12:32:51] 2026-02-28 17:32:09,405 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-28 12:32:51] 2026-02-28 17:32:09,405 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-28 12:32:51] 2026-02-28 17:32:09,626 | INFO     | monitor loop #2711: job 0:7031389459 is in state 'finished'
[2026-02-28 12:32:51] 2026-02-28 17:32:09,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 12:32:51] 2026-02-28 17:32:09,686 | INFO     | time since job start (81863s) is within the limit (349056.0s)
[2026-02-28 12:32:51] 2026-02-28 17:32:09,745 | INFO     | fitting pss+swap vs Time
[2026-02-28 12:32:51] 2026-02-28 17:32:09,771 | INFO     | sum of square deviations: 746090268728.728
[2026-02-28 12:32:51] 2026-02-28 17:32:10,472 | INFO     | sum of deviations: 992336780474.0101
[2026-02-28 12:32:51] 2026-02-28 17:32:10,493 | INFO     | mean x: 1772259027.277612
[2026-02-28 12:32:51] 2026-02-28 17:32:10,493 | INFO     | mean y: 2487756.7902985075
[2026-02-28 12:32:51] 2026-02-28 17:32:10,494 | INFO     | intersect: -2354703981.270162
[2026-02-28 12:32:51] 2026-02-28 17:32:10,519 | INFO     | chi2: 6.279450587477305
[2026-02-28 12:32:51] 2026-02-28 17:32:10,547 | INFO     | sum of square deviations: 737770255272.4355
[2026-02-28 12:32:51] 2026-02-28 17:32:11,158 | INFO     | sum of deviations: 1254224151843.4575
[2026-02-28 12:32:51] 2026-02-28 17:32:11,158 | INFO     | mean x: 1772258874.7835207
[2026-02-28 12:32:51] 2026-02-28 17:32:11,158 | INFO     | mean y: 2492549.7662921348
[2026-02-28 12:32:51] 2026-02-28 17:32:11,159 | INFO     | intersect: -3010382892.401795
[2026-02-28 12:32:51] 2026-02-28 17:32:11,176 | INFO     | chi2: 4.004093779784299
[2026-02-28 12:32:51] 2026-02-28 17:32:11,177 | INFO     | current chi2=4.004093779784299 (change=36.234966355664945 %)
[2026-02-28 12:32:51] 2026-02-28 17:32:11,190 | INFO     | sum of square deviations: 729512009905.8574
[2026-02-28 12:32:51] 2026-02-28 17:32:11,707 | INFO     | sum of deviations: 1246925555789.012
[2026-02-28 12:32:51] 2026-02-28 17:32:11,708 | INFO     | mean x: 1772258722.2864661
[2026-02-28 12:32:51] 2026-02-28 17:32:11,708 | INFO     | mean y: 2492414.989473684
[2026-02-28 12:32:51] 2026-02-28 17:32:11,709 | INFO     | intersect: -3026758183.0564137
[2026-02-28 12:32:51] 2026-02-28 17:32:11,759 | INFO     | time since job start (81865s) is within the limit (349056.0s)
[2026-02-28 12:32:51] 2026-02-28 17:32:11,765 | INFO     | chi2: 4.003949068141935
[2026-02-28 12:32:51] 2026-02-28 17:32:11,765 | INFO     | current chi2=4.003949068141935 (change=0.0036140922346529036 %)
[2026-02-28 12:32:51] 2026-02-28 17:32:11,765 | INFO     | right removable region: 1329
[2026-02-28 12:32:51] 2026-02-28 17:32:11,792 | INFO     | sum of square deviations: 737768883867.8682
[2026-02-28 12:32:51] 2026-02-28 17:32:12,236 | INFO     | monitor loop #2712: job 0:7031389459 is in state 'finished'
[2026-02-28 12:32:51] 2026-02-28 17:32:12,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 12:32:51] 2026-02-28 17:32:12,448 | INFO     | sum of deviations: 597494783184.7166
[2026-02-28 12:32:51] 2026-02-28 17:32:12,448 | INFO     | mean x: 1772259179.7842696
[2026-02-28 12:32:51] 2026-02-28 17:32:12,449 | INFO     | mean y: 2494990.186516854
[2026-02-28 12:32:51] 2026-02-28 17:32:12,449 | INFO     | intersect: -1432799500.4414911
[2026-02-28 12:32:51] 2026-02-28 17:32:12,497 | INFO     | chi2: 3.152325899736247
[2026-02-28 12:32:51] 2026-02-28 17:32:12,497 | INFO     | current chi2=3.152325899736247 (change=49.799335852363846 %)
[2026-02-28 12:32:51] 2026-02-28 17:32:12,522 | INFO     | sum of square deviations: 729509756191.5514
[2026-02-28 12:32:51] 2026-02-28 17:32:12,694 | INFO     | sum of deviations: 429615706441.7896
[2026-02-28 12:32:51] 2026-02-28 17:32:12,695 | INFO     | mean x: 1772259332.2894738
[2026-02-28 12:32:51] 2026-02-28 17:32:12,695 | INFO     | mean y: 2498088.584962406
[2026-02-28 12:32:51] 2026-02-28 17:32:12,696 | INFO     | intersect: -1041203436.4151696
[2026-02-28 12:32:51] 2026-02-28 17:32:12,700 | INFO     | chi2: 2.5907909831247276
[2026-02-28 12:32:51] 2026-02-28 17:32:12,700 | INFO     | current chi2=2.5907909831247276 (change=17.813352250746117 %)
[2026-02-28 12:32:51] 2026-02-28 17:32:12,701 | INFO     | left removable region: 20
[2026-02-28 12:32:51] 2026-02-28 17:32:12,705 | INFO     | sum of square deviations: 695496350826.3927
[2026-02-28 12:32:51] 2026-02-28 17:32:12,809 | INFO     | sum of deviations: 517292504148.1004
[2026-02-28 12:32:51] 2026-02-28 17:32:12,810 | INFO     | mean x: 1772259301.8113062
[2026-02-28 12:32:51] 2026-02-28 17:32:12,810 | INFO     | mean y: 2506032.344537815
[2026-02-28 12:32:51] 2026-02-28 17:32:12,811 | INFO     | intersect: -1315655380.2127182
[2026-02-28 12:32:51] 2026-02-28 17:32:12,815 | INFO     | chi2: 0.03932209284941225
[2026-02-28 12:32:51] 2026-02-28 17:32:12,816 | INFO     | current memory leak: 0.74 B/s (using 1309 data points, chi2=0.04)
[2026-02-28 12:32:51] 2026-02-28 17:32:12,819 | INFO     | could have reported an average CPU frequency of 999 MHz (49 samples)
[2026-02-28 12:32:51] 2026-02-28 17:32:12,819 | INFO     | ..............................
[2026-02-28 12:32:51] 2026-02-28 17:32:12,819 | INFO     | . Timing measurements:
[2026-02-28 12:32:51] 2026-02-28 17:32:12,821 | INFO     | . get job = 0 s
[2026-02-28 12:32:51] 2026-02-28 17:32:12,821 | INFO     | . initial setup = 3 s
[2026-02-28 12:32:51] 2026-02-28 17:32:12,822 | INFO     | . payload setup = 59 s
[2026-02-28 12:32:51] 2026-02-28 17:32:12,822 | INFO     | . stage-in = 0 s
[2026-02-28 12:32:51] 2026-02-28 17:32:12,822 | INFO     | . payload execution = 81761 s
[2026-02-28 12:32:51] 2026-02-28 17:32:12,822 | INFO     | . stage-out = 10 s
[2026-02-28 12:32:51] 2026-02-28 17:32:12,822 | INFO     | . log creation = 1 s
[2026-02-28 12:32:51] 2026-02-28 17:32:12,823 | INFO     | ..............................
[2026-02-28 12:32:51] 2026-02-28 17:32:13,085 | INFO     | 
[2026-02-28 12:32:51] 2026-02-28 17:32:13,086 | INFO     | job summary report
[2026-02-28 12:32:51] 2026-02-28 17:32:13,086 | INFO     | --------------------------------------------------
[2026-02-28 12:32:51] 2026-02-28 17:32:13,086 | INFO     | PanDA job id: 7031389459
[2026-02-28 12:32:51] 2026-02-28 17:32:13,086 | INFO     | task id: 48843036
[2026-02-28 12:32:51] 2026-02-28 17:32:13,086 | INFO     | errors: (none)
[2026-02-28 12:32:51] 2026-02-28 17:32:13,087 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-28 12:32:51] 2026-02-28 17:32:13,087 | INFO     | pilot state: finished 
[2026-02-28 12:32:51] 2026-02-28 17:32:13,087 | INFO     | transexitcode: 0
[2026-02-28 12:32:51] 2026-02-28 17:32:13,087 | INFO     | exeerrorcode: 0
[2026-02-28 12:32:51] 2026-02-28 17:32:13,087 | INFO     | exeerrordiag: 
[2026-02-28 12:32:51] 2026-02-28 17:32:13,088 | INFO     | exitcode: 0
[2026-02-28 12:32:51] 2026-02-28 17:32:13,088 | INFO     | exitmsg: OK
[2026-02-28 12:32:51] 2026-02-28 17:32:13,088 | INFO     | cpuconsumptiontime: 158386 s
[2026-02-28 12:32:51] 2026-02-28 17:32:13,088 | INFO     | nevents: 400
[2026-02-28 12:32:51] 2026-02-28 17:32:13,088 | INFO     | neventsw: 0
[2026-02-28 12:32:51] 2026-02-28 17:32:13,089 | INFO     | pid: 608605
[2026-02-28 12:32:51] 2026-02-28 17:32:13,089 | INFO     | pgrp: 608605
[2026-02-28 12:32:51] 2026-02-28 17:32:13,089 | INFO     | corecount: 8
[2026-02-28 12:32:51] 2026-02-28 17:32:13,089 | INFO     | event service: False
[2026-02-28 12:32:51] 2026-02-28 17:32:13,089 | INFO     | sizes: {0: 2286673, 1: 2287274, 2: 2287358, 4: 2287414, 5: 2287875, 6: 2287903, 16: 2288059, 81828: 2344038, 81829: 2344037, 81841: 2347666, 81844: 2347722, 81851:
[2026-02-28 12:32:51] 2026-02-28 17:32:13,090 | INFO     | --------------------------------------------------
[2026-02-28 12:32:51] 2026-02-28 17:32:13,090 | INFO     | 
[2026-02-28 12:32:51] 2026-02-28 17:32:13,090 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-02-28 12:32:51] 2026-02-28 17:32:13,397 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,398 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,398 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,411 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,411 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,411 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,413 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,413 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,413 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,414 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,414 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,414 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,414 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,415 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 12:32:51] 2026-02-28 17:32:13,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,415 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 12:32:51] 2026-02-28 17:32:13,416 | INFO     | job 7031389459 has completed (purged errors)
[2026-02-28 12:32:51] 2026-02-28 17:32:13,416 | INFO     | overall cleanup function is called
[2026-02-28 12:32:51] 2026-02-28 17:32:14,435 | INFO     | --- collectZombieJob: --- 10, [608605]
[2026-02-28 12:32:51] 2026-02-28 17:32:14,435 | INFO     | zombie collector waiting for pid 608605
[2026-02-28 12:32:51] 2026-02-28 17:32:14,435 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 12:32:51] 2026-02-28 17:32:14,436 | INFO     | collected zombie processes
[2026-02-28 12:32:51] 2026-02-28 17:32:14,436 | INFO     | will attempt to kill all subprocesses of pid=608605
[2026-02-28 12:32:51] 2026-02-28 17:32:18,744 | INFO     | process IDs to be killed: [608605] (in reverse order)
[2026-02-28 12:32:51] 2026-02-28 17:32:19,545 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 12:32:51] 2026-02-28 17:32:19,545 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 12:32:51] 2026-02-28 17:32:19,596 | INFO     | did not find any defunct processes belonging to 608605
[2026-02-28 12:32:51] 2026-02-28 17:32:19,638 | INFO     | did not find any defunct processes belonging to 608605
[2026-02-28 12:32:51] 2026-02-28 17:32:19,639 | INFO     | ready for new job
[2026-02-28 12:32:51] 2026-02-28 17:32:19,639 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 12:32:51] 2026-02-28 17:32:19,647 | INFO     | **************************************
[2026-02-28 12:32:51] 2026-02-28 17:32:19,648 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 12:32:51] 2026-02-28 17:32:19,648 | INFO     | **************************************
[2026-02-28 12:32:51] 2026-02-28 17:32:19,648 | INFO     | 
[2026-02-28 12:32:51] 2026-02-28 17:32:19,663 | INFO     | architecture information:
[2026-02-28 12:32:51] 2026-02-28 17:32:19,671 | INFO     | executing command: cat /etc/os-release
[2026-02-28 12:32:51] 2026-02-28 17:32:19,824 | INFO     | cat /etc/os-release:
[2026-02-28 12:32:51] NAME="CentOS Linux"
[2026-02-28 12:32:51] VERSION="7 (Core)"
[2026-02-28 12:32:51] ID="centos"
[2026-02-28 12:32:51] ID_LIKE="rhel fedora"
[2026-02-28 12:32:51] VERSION_ID="7"
[2026-02-28 12:32:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 12:32:51] ANSI_COLOR="0;31"
[2026-02-28 12:32:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 12:32:51] HOME_URL="https://www.centos.org/"
[2026-02-28 12:32:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 12:32:51] 
[2026-02-28 12:32:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 12:32:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 12:32:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 12:32:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 12:32:51] 
[2026-02-28 12:32:51] 2026-02-28 17:32:19,825 | INFO     | **************************************
[2026-02-28 12:32:51] 2026-02-28 17:32:20,329 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-02-28 12:32:51] 2026-02-28 17:32:20,549 | INFO     | sufficient remaining disk space (93657759744 B)
[2026-02-28 12:32:51] 2026-02-28 17:32:20,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 12:32:51] 2026-02-28 17:32:20,551 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 12:32:51] 2026-02-28 17:32:20,551 | INFO     | update_server=False
[2026-02-28 12:32:51] 2026-02-28 17:32:20,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 12:32:51] 2026-02-28 17:32:20,681 | INFO     | all data control threads have been joined
[2026-02-28 12:32:51] 2026-02-28 17:32:20,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 12:32:51] 2026-02-28 17:32:20,798 | INFO     | aborting loop
[2026-02-28 12:32:51] 2026-02-28 17:32:21,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 12:32:51] 2026-02-28 17:32:21,293 | INFO     | all payload control threads have been joined
[2026-02-28 12:32:51] 2026-02-28 17:32:21,572 | INFO     | [job] retrieve thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:21,686 | INFO     | [data] control thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:21,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 12:32:51] 2026-02-28 17:32:21,805 | INFO     | [job] job monitor thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:21,883 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:21,902 | INFO     | all job control threads have been joined
[2026-02-28 12:32:51] 2026-02-28 17:32:22,021 | INFO     | [data] copytool_in thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:22,163 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 12:32:51] 2026-02-28 17:32:22,299 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:22,304 | INFO     | [payload] control thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:22,340 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:22,697 | INFO     | [payload] failed_post thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:22,793 | INFO     | [payload] validate_post thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:22,907 | INFO     | [job] control thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:23,005 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:23,010 | INFO     | [job] validate thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:23,169 | INFO     | [job] queue monitor thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:23,774 | INFO     | [data] copytool_out thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:25,291 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 12:32:51] 2026-02-28 17:32:32,288 | INFO     | [monitor] cgroup control has ended
[2026-02-28 12:32:51] 2026-02-28 17:32:33,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139844220921664)>', '<ExcThread(monitor, started 139843841541888)>']
[2026-02-28 12:32:51] 2026-02-28 17:32:38,900 | INFO     | all workflow threads have been joined
[2026-02-28 12:32:51] 2026-02-28 17:32:38,912 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 12:32:51] 2026-02-28 17:32:38,912 | INFO     | traces error code: 0
[2026-02-28 12:32:51] 2026-02-28 17:32:38,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 12:32:51] 2026-02-28 17:32:50,058 | INFO     | PID=588439 has CPU usage=16.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-28 12:32:51] 2026-02-28 17:32:50,058 | INFO     | .. there are 31 such processes running
[2026-02-28 12:32:51] 2026-02-28 17:32:50,060 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 12:32:51] 2026-02-28 17:32:50,061 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 12:32:51] 2026-02-28 17:32:50,061 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 12:32:51] 2026-02-28 17:32:50,061 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 12:32:51] 2026-02-28 17:32:50,061 | INFO     | [monitor] control thread has ended
[2026-02-28 12:32:51] 2026-02-28 17:32:50,498 [wrapper] ==== pilot stdout END ====
[2026-02-28 12:32:51] 2026-02-28 17:32:50,518 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 12:32:51] 2026-02-28 17:32:50,548 [wrapper] pilotpid: 588439
[2026-02-28 12:32:51] 2026-02-28 17:32:50,578 [wrapper] Pilot exit status: 0
[2026-02-28 12:32:51] 2026-02-28 17:32:50,666 [wrapper] pandaids: 7031389459 7031389459
[2026-02-28 12:32:51] 2026-02-28 17:32:51,012 [wrapper] cleanup supervisor_pilot 3834701 588440
[2026-02-28 12:32:51] 2026-02-28 17:32:51,021 [wrapper] Test setup, not cleaning
[2026-02-28 12:32:51] 2026-02-28 17:32:51,031 [wrapper] apfmon messages muted
[2026-02-28 12:32:51] 2026-02-28 17:32:51,038 [wrapper] ==== wrapper stdout END ====
[2026-02-28 12:32:51] 2026-02-28 17:32:51,057 [wrapper] ==== wrapper stderr END ====
[2026-02-28 12:32:51]  *** Error codes and diagnostics ***
[2026-02-28 12:32:51]     "exeErrorCode": 0,
[2026-02-28 12:32:51]     "exeErrorDiag": "",
[2026-02-28 12:32:51]     "pilotErrorCode": 0,
[2026-02-28 12:32:51]     "pilotErrorDiag": "",
[2026-02-28 12:32:51]  *** Listing of results directory ***
[2026-02-28 12:32:51] total 677476
[2026-02-28 12:32:51] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas    584627 Feb 27 04:20 pilot3.tar.gz
[2026-02-28 12:32:51] -rwx------. 1 boincer umatlas     36322 Feb 27 04:21 runpilot2-wrapper.sh
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas      5111 Feb 27 04:21 queuedata.json
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas       100 Feb 27 11:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 12:32:51] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 27 11:23 run_atlas
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas       105 Feb 27 11:23 job.xml
[2026-02-28 12:32:51] -rw-r--r--. 3 boincer umatlas 255317318 Feb 27 11:23 EVNT.48447451._000001.pool.root.1
[2026-02-28 12:32:51] -rw-r--r--. 3 boincer umatlas 255317318 Feb 27 11:23 ATLAS.root_0
[2026-02-28 12:32:51] -rw-r--r--. 2 boincer umatlas     15845 Feb 27 11:23 start_atlas.sh
[2026-02-28 12:32:51] drwxrwx--x. 2 boincer umatlas      4096 Feb 27 11:23 shared
[2026-02-28 12:32:51] -rw-r--r--. 2 boincer umatlas    597977 Feb 27 11:23 input.tar.gz
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas         0 Feb 27 11:23 boinc_lockfile
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas      2619 Feb 27 13:46 pandaJob.out
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas        57 Feb 27 13:46 setup.sh.local
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas    998790 Feb 27 13:47 agis_schedconf.cvmfs.json
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas       443 Feb 27 13:47 workernode_map.json
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas 163100088 Feb 28 12:28 HITS.48843036._000014.pool.root.1
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas       531 Feb 28 12:29 boinc_task_state.xml
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas      6860 Feb 28 12:31 init_data.xml
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas      1055 Feb 28 12:31 memory_monitor_summary.json
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas   1513015 Feb 28 12:31 agis_ddmendpoints.agis.ALL.json
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas   1077720 Feb 28 12:32 log.48843036._000014.job.log.tgz.1
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas      6416 Feb 28 12:32 heartbeat.json
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas      8192 Feb 28 12:32 boinc_mmap_file
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas        29 Feb 28 12:32 wrapper_checkpoint.txt
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas        96 Feb 28 12:32 pilot_heartbeat.json
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas       823 Feb 28 12:32 pilotlog.txt
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas   6951535 Feb 28 12:32 log.48843036._000014.job.log.1
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas       357 Feb 28 12:32 output.list
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas       620 Feb 28 12:32 runtime_log
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas   8048640 Feb 28 12:32 result.tar.gz
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas      9437 Feb 28 12:32 runtime_log.err
[2026-02-28 12:32:51] -rw-------. 1 boincer umatlas       792 Feb 28 12:32 9mGKDmMD9F9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm9i4KDmYNfYQn.diag
[2026-02-28 12:32:51] -rw-r--r--. 1 boincer umatlas     23519 Feb 28 12:32 stderr.txt
[2026-02-28 12:32:52] HITS file was successfully produced:
[2026-02-28 12:32:52] -rw-------. 1 boincer umatlas 163100088 Feb 28 12:28 shared/HITS.pool.root.1
[2026-02-28 12:32:52]  *** Contents of shared directory: ***
[2026-02-28 12:32:52] total 417084
[2026-02-28 12:32:52] -rw-r--r--. 3 boincer umatlas 255317318 Feb 27 11:23 ATLAS.root_0
[2026-02-28 12:32:52] -rw-r--r--. 2 boincer umatlas     15845 Feb 27 11:23 start_atlas.sh
[2026-02-28 12:32:52] -rw-r--r--. 2 boincer umatlas    597977 Feb 27 11:23 input.tar.gz
[2026-02-28 12:32:52] -rw-------. 1 boincer umatlas 163100088 Feb 28 12:28 HITS.pool.root.1
[2026-02-28 12:32:52] -rw-------. 1 boincer umatlas   8048640 Feb 28 12:32 result.tar.gz
12:32:53 (563138): run_atlas exited; CPU time 166176.706754
12:32:53 (563138): called boinc_finish(0)

</stderr_txt>
]]>

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