Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:01:15 (665347): wrapper (7.7.26015): starting
06:01:15 (665347): wrapper: running run_atlas (--nthreads 4)
[2026-02-28 06:01:15] Arguments: --nthreads 4
[2026-02-28 06:01:15] Threads: 4
[2026-02-28 06:01:15] Checking for CVMFS
[2026-02-28 06:01:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 06:01:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 06:01:15] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 06:01:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 06:01:15] 2.9.2.0 16149 3677 90852 156720 1 50 27707708 36864001 0 130560 0 1873362 99.983 149399 14771 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 06:01:15] CVMFS is ok
[2026-02-28 06:01:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 06:01:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 06:01:15] Further information can be found at the LHC@home message board.
[2026-02-28 06:01:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 06:01:15] Checking for apptainer binary...
[2026-02-28 06:01:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 06:01:15] Running /usr/bin/apptainer --version
[2026-02-28 06:01:15] apptainer version 1.4.1-1.1
[2026-02-28 06:01:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 06:01:15] thA369a
[2026-02-28 06:01:15] apptainer works
[2026-02-28 06:01:15] Set ATHENA_PROC_NUMBER=4
[2026-02-28 06:01:15] Set ATHENA_CORE_NUMBER=4
[2026-02-28 06:01:15] Starting ATLAS job with PandaID=7021103542
[2026-02-28 06:01:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 07:32:40]  *** The last 200 lines of the pilot log: ***
[2026-02-28 07:32:40] 2026-02-28 06:31:38,496 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 07:32:40] 2026-02-28 06:31:38,496 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 07:32:40] 2026-02-28 06:31:38,496 | INFO     | job 7021103542 has completed (purged errors)
[2026-02-28 07:32:40] 2026-02-28 06:31:38,496 | INFO     | overall cleanup function is called
[2026-02-28 07:32:40] 2026-02-28 06:31:39,503 | INFO     | --- collectZombieJob: --- 10, [673934]
[2026-02-28 07:32:40] 2026-02-28 06:31:39,503 | INFO     | zombie collector waiting for pid 673934
[2026-02-28 07:32:40] 2026-02-28 06:31:39,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 07:32:40] 2026-02-28 06:31:39,503 | INFO     | collected zombie processes
[2026-02-28 07:32:40] 2026-02-28 06:31:39,503 | INFO     | will attempt to kill all subprocesses of pid=673934
[2026-02-28 07:32:40] 2026-02-28 06:31:39,547 | INFO     | process IDs to be killed: [673934] (in reverse order)
[2026-02-28 07:32:40] 2026-02-28 06:31:39,574 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 07:32:40] 2026-02-28 06:31:39,574 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 07:32:40] 2026-02-28 06:31:39,575 | INFO     | did not find any defunct processes belonging to 673934
[2026-02-28 07:32:40] 2026-02-28 06:31:39,576 | INFO     | did not find any defunct processes belonging to 673934
[2026-02-28 07:32:40] 2026-02-28 06:31:39,576 | INFO     | ready for new job
[2026-02-28 07:32:40] 2026-02-28 06:31:39,576 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 07:32:40] 2026-02-28 06:31:39,577 | INFO     | **************************************
[2026-02-28 07:32:40] 2026-02-28 06:31:39,577 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 07:32:40] 2026-02-28 06:31:39,577 | INFO     | **************************************
[2026-02-28 07:32:40] 2026-02-28 06:31:39,577 | INFO     | 
[2026-02-28 07:32:40] 2026-02-28 06:31:39,578 | INFO     | architecture information:
[2026-02-28 07:32:40] 2026-02-28 06:31:39,578 | INFO     | executing command: cat /etc/os-release
[2026-02-28 07:32:40] 2026-02-28 06:31:39,588 | INFO     | cat /etc/os-release:
[2026-02-28 07:32:40] NAME="CentOS Linux"
[2026-02-28 07:32:40] VERSION="7 (Core)"
[2026-02-28 07:32:40] ID="centos"
[2026-02-28 07:32:40] ID_LIKE="rhel fedora"
[2026-02-28 07:32:40] VERSION_ID="7"
[2026-02-28 07:32:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 07:32:40] ANSI_COLOR="0;31"
[2026-02-28 07:32:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 07:32:40] HOME_URL="https://www.centos.org/"
[2026-02-28 07:32:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 07:32:40] 
[2026-02-28 07:32:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 07:32:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 07:32:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 07:32:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 07:32:40] 
[2026-02-28 07:32:40] 2026-02-28 06:31:39,588 | INFO     | **************************************
[2026-02-28 07:32:40] 2026-02-28 06:31:40,089 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 07:32:40] 2026-02-28 06:31:40,103 | INFO     | sufficient remaining disk space (229157896192 B)
[2026-02-28 07:32:40] 2026-02-28 06:31:40,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 07:32:40] 2026-02-28 06:31:40,104 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 07:32:40] 2026-02-28 06:31:40,104 | INFO     | update_server=False
[2026-02-28 07:32:40] 2026-02-28 06:31:40,104 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 07:32:40] 2026-02-28 06:31:40,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 07:32:40] 2026-02-28 06:31:40,104 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 07:32:40] 2026-02-28 06:31:40,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 07:32:40] 2026-02-28 06:31:40,104 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 07:32:40] 2026-02-28 06:31:40,104 | INFO     | aborting loop
[2026-02-28 07:32:40] 2026-02-28 06:31:40,181 | INFO     | all payload control threads have been joined
[2026-02-28 07:32:40] 2026-02-28 06:31:40,825 | INFO     | all job control threads have been joined
[2026-02-28 07:32:40] 2026-02-28 06:31:41,109 | INFO     | [job] retrieve thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:41,110 | INFO     | [job] job monitor thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:41,110 | INFO     | [payload] failed_post thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:41,110 | INFO     | [job] queue monitor thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:41,123 | INFO     | all data control threads have been joined
[2026-02-28 07:32:40] 2026-02-28 06:31:41,187 | INFO     | [payload] control thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:41,254 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:41,656 | INFO     | [payload] validate_post thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:41,831 | INFO     | [job] control thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:41,914 | INFO     | [job] validate thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:42,000 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:42,074 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:42,110 | INFO     | [data] copytool_out thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:42,128 | INFO     | [data] control thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:42,184 | INFO     | [data] copytool_in thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:44,111 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:31:50,462 | INFO     | job.realtimelogging is not enabled
[2026-02-28 07:32:40] 2026-02-28 06:31:51,467 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 07:32:40] 2026-02-28 06:32:09,904 | INFO     | PID=669441 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 07:32:40] 2026-02-28 06:32:09,905 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 07:32:40] 2026-02-28 06:32:09,905 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 07:32:40] 2026-02-28 06:32:09,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 07:32:40] 2026-02-28 06:32:33,717 | INFO     | [monitor] cgroup control has ended
[2026-02-28 07:32:40] 2026-02-28 06:32:34,944 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140231104239424)>', '<ExcThread(monitor, started 140230480885504)>']
[2026-02-28 07:32:40] 2026-02-28 06:32:35,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 07:32:40] 2026-02-28 06:32:35,039 | INFO     | [monitor] control thread has ended
[2026-02-28 07:32:40] 2026-02-28 06:32:39,970 | INFO     | all workflow threads have been joined
[2026-02-28 07:32:40] 2026-02-28 06:32:39,970 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 07:32:40] 2026-02-28 06:32:39,971 | INFO     | traces error code: 0
[2026-02-28 07:32:40] 2026-02-28 06:32:39,971 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 07:32:40] 2026-02-28 06:32:40,025 [wrapper] ==== pilot stdout END ====
[2026-02-28 07:32:40] 2026-02-28 06:32:40,028 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 07:32:40] 2026-02-28 06:32:40,031 [wrapper] pilotpid: 669441
[2026-02-28 07:32:40] 2026-02-28 06:32:40,034 [wrapper] Pilot exit status: 0
[2026-02-28 07:32:40] 2026-02-28 06:32:40,042 [wrapper] pandaids: 7021103542
[2026-02-28 07:32:40] 2026-02-28 06:32:40,061 [wrapper] cleanup supervisor_pilot  679159 669442
[2026-02-28 07:32:40] 2026-02-28 06:32:40,063 [wrapper] Test setup, not cleaning
[2026-02-28 07:32:40] 2026-02-28 06:32:40,066 [wrapper] apfmon messages muted
[2026-02-28 07:32:40] 2026-02-28 06:32:40,069 [wrapper] ==== wrapper stdout END ====
[2026-02-28 07:32:40] 2026-02-28 06:32:40,071 [wrapper] ==== wrapper stderr END ====
[2026-02-28 07:32:40]  *** Error codes and diagnostics ***
[2026-02-28 07:32:40]     "exeErrorCode": 0,
[2026-02-28 07:32:40]     "exeErrorDiag": "",
[2026-02-28 07:32:40]     "pilotErrorCode": 0,
[2026-02-28 07:32:40]     "pilotErrorDiag": "",
[2026-02-28 07:32:40]  *** Listing of results directory ***
[2026-02-28 07:32:40] total 939052
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc    584627 Feb 19 06:33 pilot3.tar.gz
[2026-02-28 07:32:40] -rwx------ 1 boinc boinc     36322 Feb 19 06:36 runpilot2-wrapper.sh
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc      5111 Feb 19 06:39 queuedata.json
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc       100 Feb 28 06:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 07:32:40] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 06:01 run_atlas
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc       105 Feb 28 06:01 job.xml
[2026-02-28 07:32:40] -rw-r--r-- 2 boinc boinc 676242808 Feb 28 06:01 EVNT.48508760._000788.pool.root.1
[2026-02-28 07:32:40] -rw-r--r-- 2 boinc boinc    597959 Feb 28 06:01 input.tar.gz
[2026-02-28 07:32:40] -rw-r--r-- 2 boinc boinc     15845 Feb 28 06:01 start_atlas.sh
[2026-02-28 07:32:40] drwxrwx--x 2 boinc boinc      4096 Feb 28 06:01 shared
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc         0 Feb 28 06:01 boinc_setup_complete
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc      6443 Feb 28 06:01 init_data.xml
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc         0 Feb 28 06:01 boinc_lockfile
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc      2551 Feb 28 06:01 pandaJob.out
[2026-02-28 07:32:40] -rw------- 1 boinc boinc    998782 Feb 28 06:01 agis_schedconf.cvmfs.json
[2026-02-28 07:32:40] -rw------- 1 boinc boinc   1513015 Feb 28 06:01 agis_ddmendpoints.agis.ALL.json
[2026-02-28 07:32:40] -rw------- 1 boinc boinc       418 Feb 28 06:01 workernode_map.json
[2026-02-28 07:32:40] drwx------ 5 boinc boinc      4096 Feb 28 06:01 pilot3
[2026-02-28 07:32:40] -rw------- 1 boinc boinc 279335927 Feb 28 07:31 HITS.48508763._041124.pool.root.1
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc       530 Feb 28 07:31 boinc_task_state.xml
[2026-02-28 07:32:40] -rw------- 1 boinc boinc      1015 Feb 28 07:31 memory_monitor_summary.json
[2026-02-28 07:32:40] -rw------- 1 boinc boinc    259820 Feb 28 07:31 log.48508763._041124.job.log.tgz.1
[2026-02-28 07:32:40] -rw------- 1 boinc boinc      6289 Feb 28 07:31 heartbeat.json
[2026-02-28 07:32:40] -rw------- 1 boinc boinc        95 Feb 28 07:32 pilot_heartbeat.json
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc      8192 Feb 28 07:32 boinc_mmap_file
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc        27 Feb 28 07:32 wrapper_checkpoint.txt
[2026-02-28 07:32:40] -rw------- 1 boinc boinc      4819 Feb 28 07:32 pilotlog.txt
[2026-02-28 07:32:40] -rw------- 1 boinc boinc    786086 Feb 28 07:32 log.48508763._041124.job.log.1
[2026-02-28 07:32:40] -rw------- 1 boinc boinc       357 Feb 28 07:32 output.list
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc       620 Feb 28 07:32 runtime_log
[2026-02-28 07:32:40] -rw------- 1 boinc boinc   1064960 Feb 28 07:32 result.tar.gz
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc      8901 Feb 28 07:32 runtime_log.err
[2026-02-28 07:32:40] -rw------- 1 boinc boinc       658 Feb 28 07:32 mWoNDmItBD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmXXxKDm2vAJym.diag
[2026-02-28 07:32:40] -rw-r--r-- 1 boinc boinc     11096 Feb 28 07:32 stderr.txt
[2026-02-28 07:32:40] HITS file was successfully produced:
[2026-02-28 07:32:40] -rw------- 1 boinc boinc 279335927 Feb 28 07:31 shared/HITS.pool.root.1
[2026-02-28 07:32:40]  *** Contents of shared directory: ***
[2026-02-28 07:32:40] total 934836
[2026-02-28 07:32:40] -rw-r--r-- 2 boinc boinc 676242808 Feb 28 06:01 ATLAS.root_0
[2026-02-28 07:32:40] -rw-r--r-- 2 boinc boinc    597959 Feb 28 06:01 input.tar.gz
[2026-02-28 07:32:40] -rw-r--r-- 2 boinc boinc     15845 Feb 28 06:01 start_atlas.sh
[2026-02-28 07:32:40] -rw------- 1 boinc boinc 279335927 Feb 28 07:31 HITS.pool.root.1
[2026-02-28 07:32:40] -rw------- 1 boinc boinc   1064960 Feb 28 07:32 result.tar.gz
07:32:41 (665347): run_atlas exited; CPU time 20659.781802
07:32:41 (665347): called boinc_finish(0)

</stderr_txt>
]]>

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