Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:22:10 (341601): wrapper (7.7.26015): starting
03:22:10 (341601): wrapper: running run_atlas (--nthreads 2)
[2026-02-28 03:22:10] Arguments: --nthreads 2
[2026-02-28 03:22:10] Threads: 2
[2026-02-28 03:22:10] Checking for CVMFS
[2026-02-28 03:22:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 03:22:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 03:22:11] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 03:22:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 03:22:11] 2.9.2.0 22417 3534 60484 156716 2 49 25408062 36864000 0 130560 0 944372 99.969 149959 10904 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 03:22:11] CVMFS is ok
[2026-02-28 03:22:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 03:22:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 03:22:11] Further information can be found at the LHC@home message board.
[2026-02-28 03:22:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 03:22:11] Checking for apptainer binary...
[2026-02-28 03:22:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 03:22:11] Running /usr/bin/apptainer --version
[2026-02-28 03:22:11] apptainer version 1.4.1-1.1
[2026-02-28 03:22:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 03:22:11] thA314b
[2026-02-28 03:22:11] apptainer works
[2026-02-28 03:22:11] Set ATHENA_PROC_NUMBER=2
[2026-02-28 03:22:11] Set ATHENA_CORE_NUMBER=2
[2026-02-28 03:22:11] Starting ATLAS job with PandaID=7031257972
[2026-02-28 03:22:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 05:39:59]  *** The last 200 lines of the pilot log: ***
[2026-02-28 05:39:59] 2026-02-28 04:39:28,812 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 05:39:59] 2026-02-28 04:39:28,836 | INFO     | all payload control threads have been joined
[2026-02-28 05:39:59] 2026-02-28 04:39:28,890 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-28 05:39:59] 2026-02-28 04:39:28,891 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-28 05:39:59] 2026-02-28 04:39:28,891 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 05:39:59] 2026-02-28 04:39:28,891 | INFO     | will abort loop
[2026-02-28 05:39:59] 2026-02-28 04:39:28,973 | INFO     | all job control threads have been joined
[2026-02-28 05:39:59] 2026-02-28 04:39:29,297 | INFO     | all data control threads have been joined
[2026-02-28 05:39:59] 2026-02-28 04:39:29,817 | INFO     | [job] queue monitor thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:29,818 | INFO     | [job] retrieve thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:29,841 | INFO     | [payload] control thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:29,860 | INFO     | [job] validate thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:29,892 | INFO     | [job] job monitor thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:29,915 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:29,979 | INFO     | [job] control thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:30,147 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:30,214 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:30,248 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:30,303 | INFO     | [data] control thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:30,378 | INFO     | [data] copytool_in thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:30,400 | INFO     | [payload] validate_post thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:30,818 | INFO     | [data] copytool_out thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:31,413 | INFO     | [payload] failed_post thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:31,518 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 05:39:59] 2026-02-28 04:39:35,522 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 05:39:59] 2026-02-28 04:39:40,950 | INFO     | [monitor] cgroup control has ended
[2026-02-28 05:39:59] 2026-02-28 04:39:40,956 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140418126653248)>', '<ExcThread(monitor, started 140417496504064)>']
[2026-02-28 05:39:59] 2026-02-28 04:39:45,982 | INFO     | all workflow threads have been joined
[2026-02-28 05:39:59] 2026-02-28 04:39:45,982 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 05:39:59] 2026-02-28 04:39:45,982 | INFO     | traces error code: 0
[2026-02-28 05:39:59] 2026-02-28 04:39:45,982 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 05:39:59] 2026-02-28 04:39:59,150 | INFO     | PID=345627 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 05:39:59] 2026-02-28 04:39:59,150 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 05:39:59] 2026-02-28 04:39:59,150 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 05:39:59] 2026-02-28 04:39:59,150 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 05:39:59] 2026-02-28 04:39:59,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 05:39:59] 2026-02-28 04:39:59,150 | INFO     | [monitor] control thread has ended
[2026-02-28 05:39:59] 2026-02-28 04:39:59,191 [wrapper] ==== pilot stdout END ====
[2026-02-28 05:39:59] 2026-02-28 04:39:59,193 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 05:39:59] 2026-02-28 04:39:59,196 [wrapper] pilotpid: 345627
[2026-02-28 05:39:59] 2026-02-28 04:39:59,198 [wrapper] Pilot exit status: 0
[2026-02-28 05:39:59] 2026-02-28 04:39:59,204 [wrapper] pandaids: 7031257972
[2026-02-28 05:39:59] 2026-02-28 04:39:59,216 [wrapper] cleanup supervisor_pilot  355501 345628
[2026-02-28 05:39:59] 2026-02-28 04:39:59,218 [wrapper] Test setup, not cleaning
[2026-02-28 05:39:59] 2026-02-28 04:39:59,220 [wrapper] apfmon messages muted
[2026-02-28 05:39:59] 2026-02-28 04:39:59,222 [wrapper] ==== wrapper stdout END ====
[2026-02-28 05:39:59] 2026-02-28 04:39:59,224 [wrapper] ==== wrapper stderr END ====
[2026-02-28 05:39:59]  *** Error codes and diagnostics ***
[2026-02-28 05:39:59]     "exeErrorCode": 0,
[2026-02-28 05:39:59]     "exeErrorDiag": "",
[2026-02-28 05:39:59]     "pilotErrorCode": 0,
[2026-02-28 05:39:59]     "pilotErrorDiag": "",
[2026-02-28 05:39:59]  *** Listing of results directory ***
[2026-02-28 05:39:59] total 466100
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc    584627 Feb 27 06:46 pilot3.tar.gz
[2026-02-28 05:39:59] -rwx------ 1 boinc boinc     36322 Feb 27 06:46 runpilot2-wrapper.sh
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc      5111 Feb 27 06:47 queuedata.json
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc       100 Feb 28 03:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 05:39:59] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 03:22 run_atlas
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc       105 Feb 28 03:22 job.xml
[2026-02-28 05:39:59] -rw-r--r-- 2 boinc boinc 272442118 Feb 28 03:22 EVNT.48343704._000007.pool.root.1
[2026-02-28 05:39:59] -rw-r--r-- 2 boinc boinc    597957 Feb 28 03:22 input.tar.gz
[2026-02-28 05:39:59] -rw-r--r-- 2 boinc boinc     15845 Feb 28 03:22 start_atlas.sh
[2026-02-28 05:39:59] drwxrwx--x 2 boinc boinc      4096 Feb 28 03:22 shared
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc         0 Feb 28 03:22 boinc_setup_complete
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc      6206 Feb 28 03:22 init_data.xml
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc         0 Feb 28 03:22 boinc_lockfile
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc      2571 Feb 28 03:22 pandaJob.out
[2026-02-28 05:39:59] -rw------- 1 boinc boinc    998790 Feb 28 03:22 agis_schedconf.cvmfs.json
[2026-02-28 05:39:59] -rw------- 1 boinc boinc   1513015 Feb 28 03:22 agis_ddmendpoints.agis.ALL.json
[2026-02-28 05:39:59] -rw------- 1 boinc boinc       417 Feb 28 03:22 workernode_map.json
[2026-02-28 05:39:59] drwx------ 5 boinc boinc      4096 Feb 28 03:22 pilot3
[2026-02-28 05:39:59] -rw------- 1 boinc boinc 198002208 Feb 28 05:39 HITS.48838536._000172.pool.root.1
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc       529 Feb 28 05:39 boinc_task_state.xml
[2026-02-28 05:39:59] -rw------- 1 boinc boinc      1016 Feb 28 05:39 memory_monitor_summary.json
[2026-02-28 05:39:59] -rw------- 1 boinc boinc    294869 Feb 28 05:39 log.48838536._000172.job.log.tgz.1
[2026-02-28 05:39:59] -rw------- 1 boinc boinc      6292 Feb 28 05:39 heartbeat.json
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc        27 Feb 28 05:39 wrapper_checkpoint.txt
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc      8192 Feb 28 05:39 boinc_mmap_file
[2026-02-28 05:39:59] -rw------- 1 boinc boinc       746 Feb 28 05:39 pilotlog.txt
[2026-02-28 05:39:59] -rw------- 1 boinc boinc        95 Feb 28 05:39 pilot_heartbeat.json
[2026-02-28 05:39:59] -rw------- 1 boinc boinc   1174928 Feb 28 05:39 log.48838536._000172.job.log.1
[2026-02-28 05:39:59] -rw------- 1 boinc boinc       357 Feb 28 05:39 output.list
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc       620 Feb 28 05:39 runtime_log
[2026-02-28 05:39:59] -rw------- 1 boinc boinc   1484800 Feb 28 05:39 result.tar.gz
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc      8901 Feb 28 05:39 runtime_log.err
[2026-02-28 05:39:59] -rw------- 1 boinc boinc       658 Feb 28 05:39 43ONDmPr5F9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmkR4KDmZS39un.diag
[2026-02-28 05:39:59] -rw-r--r-- 1 boinc boinc      7291 Feb 28 05:39 stderr.txt
[2026-02-28 05:39:59] HITS file was successfully produced:
[2026-02-28 05:39:59] -rw------- 1 boinc boinc 198002208 Feb 28 05:39 shared/HITS.pool.root.1
[2026-02-28 05:39:59]  *** Contents of shared directory: ***
[2026-02-28 05:39:59] total 461480
[2026-02-28 05:39:59] -rw-r--r-- 2 boinc boinc 272442118 Feb 28 03:22 ATLAS.root_0
[2026-02-28 05:39:59] -rw-r--r-- 2 boinc boinc    597957 Feb 28 03:22 input.tar.gz
[2026-02-28 05:39:59] -rw-r--r-- 2 boinc boinc     15845 Feb 28 03:22 start_atlas.sh
[2026-02-28 05:39:59] -rw------- 1 boinc boinc 198002208 Feb 28 05:39 HITS.pool.root.1
[2026-02-28 05:39:59] -rw------- 1 boinc boinc   1484800 Feb 28 05:39 result.tar.gz
05:40:01 (341601): run_atlas exited; CPU time 16007.663400
05:40:01 (341601): called boinc_finish(0)

</stderr_txt>
]]>

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