Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:59:33 (524990): wrapper (7.7.26015): starting
05:59:33 (524990): wrapper: running run_atlas (--nthreads 3)
[2026-02-28 05:59:33] Arguments: --nthreads 3
[2026-02-28 05:59:33] Threads: 3
[2026-02-28 05:59:33] Checking for CVMFS
[2026-02-28 05:59:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 05:59:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 05:59:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 05:59:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 05:59:34] 2.9.2.0 82037 3625 67444 156720 3 50 20244388 36864001 0 130560 0 1254758 99.977 150721 19127 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 05:59:34] CVMFS is ok
[2026-02-28 05:59:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 05:59:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 05:59:34] Further information can be found at the LHC@home message board.
[2026-02-28 05:59:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 05:59:34] Checking for apptainer binary...
[2026-02-28 05:59:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 05:59:34] Running /usr/bin/apptainer --version
[2026-02-28 05:59:34] apptainer version 1.4.1-1.1
[2026-02-28 05:59:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 05:59:34] magicA244b
[2026-02-28 05:59:34] apptainer works
[2026-02-28 05:59:34] Set ATHENA_PROC_NUMBER=3
[2026-02-28 05:59:34] Set ATHENA_CORE_NUMBER=3
[2026-02-28 05:59:34] Starting ATLAS job with PandaID=7031258521
[2026-02-28 05:59:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 07:40:12]  *** The last 200 lines of the pilot log: ***
[2026-02-28 07:40:12] 2026-02-28 06:39:41,306 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 07:40:12] 2026-02-28 06:39:41,307 | INFO     | job 7031258521 has completed (purged errors)
[2026-02-28 07:40:12] 2026-02-28 06:39:41,307 | INFO     | overall cleanup function is called
[2026-02-28 07:40:12] 2026-02-28 06:39:42,310 | INFO     | --- collectZombieJob: --- 10, [533491]
[2026-02-28 07:40:12] 2026-02-28 06:39:42,311 | INFO     | zombie collector waiting for pid 533491
[2026-02-28 07:40:12] 2026-02-28 06:39:42,311 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 07:40:12] 2026-02-28 06:39:42,312 | INFO     | collected zombie processes
[2026-02-28 07:40:12] 2026-02-28 06:39:42,312 | INFO     | will attempt to kill all subprocesses of pid=533491
[2026-02-28 07:40:12] 2026-02-28 06:39:42,348 | INFO     | process IDs to be killed: [533491] (in reverse order)
[2026-02-28 07:40:12] 2026-02-28 06:39:42,374 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 07:40:12] 2026-02-28 06:39:42,374 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 07:40:12] 2026-02-28 06:39:42,375 | INFO     | did not find any defunct processes belonging to 533491
[2026-02-28 07:40:12] 2026-02-28 06:39:42,376 | INFO     | did not find any defunct processes belonging to 533491
[2026-02-28 07:40:12] 2026-02-28 06:39:42,376 | INFO     | ready for new job
[2026-02-28 07:40:12] 2026-02-28 06:39:42,376 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 07:40:12] 2026-02-28 06:39:42,377 | INFO     | **************************************
[2026-02-28 07:40:12] 2026-02-28 06:39:42,377 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 07:40:12] 2026-02-28 06:39:42,377 | INFO     | **************************************
[2026-02-28 07:40:12] 2026-02-28 06:39:42,377 | INFO     | 
[2026-02-28 07:40:12] 2026-02-28 06:39:42,377 | INFO     | architecture information:
[2026-02-28 07:40:12] 2026-02-28 06:39:42,377 | INFO     | executing command: cat /etc/os-release
[2026-02-28 07:40:12] 2026-02-28 06:39:42,387 | INFO     | cat /etc/os-release:
[2026-02-28 07:40:12] NAME="CentOS Linux"
[2026-02-28 07:40:12] VERSION="7 (Core)"
[2026-02-28 07:40:12] ID="centos"
[2026-02-28 07:40:12] ID_LIKE="rhel fedora"
[2026-02-28 07:40:12] VERSION_ID="7"
[2026-02-28 07:40:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 07:40:12] ANSI_COLOR="0;31"
[2026-02-28 07:40:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 07:40:12] HOME_URL="https://www.centos.org/"
[2026-02-28 07:40:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 07:40:12] 
[2026-02-28 07:40:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 07:40:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 07:40:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 07:40:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 07:40:12] 
[2026-02-28 07:40:12] 2026-02-28 06:39:42,387 | INFO     | **************************************
[2026-02-28 07:40:12] 2026-02-28 06:39:42,890 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 07:40:12] 2026-02-28 06:39:42,903 | INFO     | sufficient remaining disk space (339635863552 B)
[2026-02-28 07:40:12] 2026-02-28 06:39:42,903 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 07:40:12] 2026-02-28 06:39:42,903 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 07:40:12] 2026-02-28 06:39:42,903 | INFO     | update_server=False
[2026-02-28 07:40:12] 2026-02-28 06:39:42,903 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 07:40:12] 2026-02-28 06:39:42,903 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 07:40:12] 2026-02-28 06:39:42,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 07:40:12] 2026-02-28 06:39:42,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 07:40:12] 2026-02-28 06:39:42,904 | INFO     | aborting loop
[2026-02-28 07:40:12] 2026-02-28 06:39:43,210 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 07:40:12] 2026-02-28 06:39:43,302 | INFO     | job.realtimelogging is not enabled
[2026-02-28 07:40:12] 2026-02-28 06:39:43,422 | INFO     | all payload control threads have been joined
[2026-02-28 07:40:12] 2026-02-28 06:39:43,445 | INFO     | all job control threads have been joined
[2026-02-28 07:40:12] 2026-02-28 06:39:43,909 | INFO     | [job] retrieve thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:43,909 | INFO     | [job] job monitor thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:43,910 | INFO     | [job] queue monitor thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:43,915 | INFO     | all data control threads have been joined
[2026-02-28 07:40:12] 2026-02-28 06:39:43,947 | INFO     | [payload] validate_post thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:44,308 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:44,428 | INFO     | [payload] control thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:44,451 | INFO     | [job] control thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:44,476 | INFO     | [payload] failed_post thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:44,560 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:44,847 | INFO     | [job] validate thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:44,878 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:44,921 | INFO     | [data] control thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:44,930 | INFO     | [data] copytool_in thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:45,217 | INFO     | [data] copytool_out thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:45,217 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:46,910 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 07:40:12] 2026-02-28 06:39:58,118 | INFO     | [monitor] cgroup control has ended
[2026-02-28 07:40:12] 2026-02-28 06:39:58,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140657843373888)>', '<ExcThread(monitor, started 140657200973568)>']
[2026-02-28 07:40:12] 2026-02-28 06:40:04,012 | INFO     | all workflow threads have been joined
[2026-02-28 07:40:12] 2026-02-28 06:40:04,013 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 07:40:12] 2026-02-28 06:40:04,013 | INFO     | traces error code: 0
[2026-02-28 07:40:12] 2026-02-28 06:40:04,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 07:40:12] 2026-02-28 06:40:12,796 | INFO     | PID=529032 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 07:40:12] 2026-02-28 06:40:12,796 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 07:40:12] 2026-02-28 06:40:12,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 07:40:12] 2026-02-28 06:40:12,796 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 07:40:12] 2026-02-28 06:40:12,796 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 07:40:12] 2026-02-28 06:40:12,796 | INFO     | [monitor] control thread has ended
[2026-02-28 07:40:12] 2026-02-28 06:40:12,839 [wrapper] ==== pilot stdout END ====
[2026-02-28 07:40:12] 2026-02-28 06:40:12,841 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 07:40:12] 2026-02-28 06:40:12,844 [wrapper] pilotpid: 529032
[2026-02-28 07:40:12] 2026-02-28 06:40:12,847 [wrapper] Pilot exit status: 0
[2026-02-28 07:40:12] 2026-02-28 06:40:12,854 [wrapper] pandaids: 7031258521
[2026-02-28 07:40:12] 2026-02-28 06:40:12,870 [wrapper] cleanup supervisor_pilot  538894 529033
[2026-02-28 07:40:12] 2026-02-28 06:40:12,873 [wrapper] Test setup, not cleaning
[2026-02-28 07:40:12] 2026-02-28 06:40:12,875 [wrapper] apfmon messages muted
[2026-02-28 07:40:12] 2026-02-28 06:40:12,878 [wrapper] ==== wrapper stdout END ====
[2026-02-28 07:40:12] 2026-02-28 06:40:12,880 [wrapper] ==== wrapper stderr END ====
[2026-02-28 07:40:12]  *** Error codes and diagnostics ***
[2026-02-28 07:40:12]     "exeErrorCode": 0,
[2026-02-28 07:40:12]     "exeErrorDiag": "",
[2026-02-28 07:40:12]     "pilotErrorCode": 0,
[2026-02-28 07:40:12]     "pilotErrorDiag": "",
[2026-02-28 07:40:12]  *** Listing of results directory ***
[2026-02-28 07:40:12] total 468492
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc    584627 Feb 27 06:46 pilot3.tar.gz
[2026-02-28 07:40:12] -rwx------ 1 boinc boinc     36322 Feb 27 06:46 runpilot2-wrapper.sh
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc      5111 Feb 27 06:46 queuedata.json
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc       100 Feb 28 05:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 07:40:12] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 05:59 run_atlas
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc       105 Feb 28 05:59 job.xml
[2026-02-28 07:40:12] -rw-r--r-- 2 boinc boinc 269559375 Feb 28 05:59 EVNT.48343704._000014.pool.root.1
[2026-02-28 07:40:12] -rw-r--r-- 2 boinc boinc    597947 Feb 28 05:59 input.tar.gz
[2026-02-28 07:40:12] -rw-r--r-- 2 boinc boinc     15845 Feb 28 05:59 start_atlas.sh
[2026-02-28 07:40:12] drwxrwx--x 2 boinc boinc      4096 Feb 28 05:59 shared
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc         0 Feb 28 05:59 boinc_setup_complete
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc      6199 Feb 28 05:59 init_data.xml
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc         0 Feb 28 05:59 boinc_lockfile
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc      2571 Feb 28 05:59 pandaJob.out
[2026-02-28 07:40:12] -rw------- 1 boinc boinc    998782 Feb 28 05:59 agis_schedconf.cvmfs.json
[2026-02-28 07:40:12] -rw------- 1 boinc boinc   1513015 Feb 28 05:59 agis_ddmendpoints.agis.ALL.json
[2026-02-28 07:40:12] -rw------- 1 boinc boinc       430 Feb 28 05:59 workernode_map.json
[2026-02-28 07:40:12] drwx------ 5 boinc boinc      4096 Feb 28 05:59 pilot3
[2026-02-28 07:40:12] -rw------- 1 boinc boinc        95 Feb 28 07:39 pilot_heartbeat.json
[2026-02-28 07:40:12] -rw------- 1 boinc boinc 204026162 Feb 28 07:39 HITS.48838536._000327.pool.root.1
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc       529 Feb 28 07:39 boinc_task_state.xml
[2026-02-28 07:40:12] -rw------- 1 boinc boinc      1015 Feb 28 07:39 memory_monitor_summary.json
[2026-02-28 07:40:12] -rw------- 1 boinc boinc    253789 Feb 28 07:39 log.48838536._000327.job.log.tgz.1
[2026-02-28 07:40:12] -rw------- 1 boinc boinc      6308 Feb 28 07:39 heartbeat.json
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc      8192 Feb 28 07:39 boinc_mmap_file
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc        27 Feb 28 07:39 wrapper_checkpoint.txt
[2026-02-28 07:40:12] -rw------- 1 boinc boinc       746 Feb 28 07:40 pilotlog.txt
[2026-02-28 07:40:12] -rw------- 1 boinc boinc    868103 Feb 28 07:40 log.48838536._000327.job.log.1
[2026-02-28 07:40:12] -rw------- 1 boinc boinc       357 Feb 28 07:40 output.list
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc       620 Feb 28 07:40 runtime_log
[2026-02-28 07:40:12] -rw------- 1 boinc boinc   1136640 Feb 28 07:40 result.tar.gz
[2026-02-28 07:40:12] -rw------- 1 boinc boinc       661 Feb 28 07:40 twXKDmQr5F9n9Rq4apOajLDm4fhM0noT9bVooX4SDmva2KDmuI8Lgn.diag
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc      8916 Feb 28 07:40 runtime_log.err
[2026-02-28 07:40:12] -rw-r--r-- 1 boinc boinc     10991 Feb 28 07:40 stderr.txt
[2026-02-28 07:40:12] HITS file was successfully produced:
[2026-02-28 07:40:12] -rw------- 1 boinc boinc 204026162 Feb 28 07:39 shared/HITS.pool.root.1
[2026-02-28 07:40:12]  *** Contents of shared directory: ***
[2026-02-28 07:40:12] total 464208
[2026-02-28 07:40:12] -rw-r--r-- 2 boinc boinc 269559375 Feb 28 05:59 ATLAS.root_0
[2026-02-28 07:40:12] -rw-r--r-- 2 boinc boinc    597947 Feb 28 05:59 input.tar.gz
[2026-02-28 07:40:12] -rw-r--r-- 2 boinc boinc     15845 Feb 28 05:59 start_atlas.sh
[2026-02-28 07:40:12] -rw------- 1 boinc boinc 204026162 Feb 28 07:39 HITS.pool.root.1
[2026-02-28 07:40:12] -rw------- 1 boinc boinc   1136640 Feb 28 07:40 result.tar.gz
07:40:14 (524990): run_atlas exited; CPU time 17202.650879
07:40:14 (524990): called boinc_finish(0)

</stderr_txt>
]]>

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