Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:42:21 (662073): wrapper (7.7.26015): starting
03:42:21 (662073): wrapper: running run_atlas (--nthreads 4)
[2026-02-28 03:42:21] Arguments: --nthreads 4
[2026-02-28 03:42:21] Threads: 4
[2026-02-28 03:42:21] Checking for CVMFS
[2026-02-28 03:42:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 03:42:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 03:42:22] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 03:42:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 03:42:22] 2.9.2.0 79673 3509 93064 156716 0 50 27667092 36864000 0 130560 0 1523105 99.979 152066 6142 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 03:42:22] CVMFS is ok
[2026-02-28 03:42:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 03:42:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 03:42:22] Further information can be found at the LHC@home message board.
[2026-02-28 03:42:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 03:42:22] Checking for apptainer binary...
[2026-02-28 03:42:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 03:42:22] Running /usr/bin/apptainer --version
[2026-02-28 03:42:22] apptainer version 1.4.1-1.1
[2026-02-28 03:42:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 03:42:22] thA309
[2026-02-28 03:42:22] apptainer works
[2026-02-28 03:42:22] Set ATHENA_PROC_NUMBER=4
[2026-02-28 03:42:22] Set ATHENA_CORE_NUMBER=4
[2026-02-28 03:42:22] Starting ATLAS job with PandaID=7031261776
[2026-02-28 03:42:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 05:05:48]  *** The last 200 lines of the pilot log: ***
[2026-02-28 05:05:48] 2026-02-28 04:05:24,969 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,969 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,969 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,969 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,969 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,969 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,969 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,969 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,969 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,969 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,970 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,970 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,970 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,970 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,970 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,970 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 05:05:48] 2026-02-28 04:05:24,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,970 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 05:05:48] 2026-02-28 04:05:24,970 | INFO     | job 7031261776 has completed (purged errors)
[2026-02-28 05:05:48] 2026-02-28 04:05:24,970 | INFO     | overall cleanup function is called
[2026-02-28 05:05:48] 2026-02-28 04:05:25,977 | INFO     | --- collectZombieJob: --- 10, [670699]
[2026-02-28 05:05:48] 2026-02-28 04:05:25,977 | INFO     | zombie collector waiting for pid 670699
[2026-02-28 05:05:48] 2026-02-28 04:05:25,977 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 05:05:48] 2026-02-28 04:05:25,977 | INFO     | collected zombie processes
[2026-02-28 05:05:48] 2026-02-28 04:05:25,977 | INFO     | will attempt to kill all subprocesses of pid=670699
[2026-02-28 05:05:48] 2026-02-28 04:05:26,026 | INFO     | process IDs to be killed: [670699] (in reverse order)
[2026-02-28 05:05:48] 2026-02-28 04:05:26,062 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 05:05:48] 2026-02-28 04:05:26,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 05:05:48] 2026-02-28 04:05:26,064 | INFO     | did not find any defunct processes belonging to 670699
[2026-02-28 05:05:48] 2026-02-28 04:05:26,065 | INFO     | did not find any defunct processes belonging to 670699
[2026-02-28 05:05:48] 2026-02-28 04:05:26,065 | INFO     | ready for new job
[2026-02-28 05:05:48] 2026-02-28 04:05:26,065 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 05:05:48] 2026-02-28 04:05:26,066 | INFO     | **************************************
[2026-02-28 05:05:48] 2026-02-28 04:05:26,066 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 05:05:48] 2026-02-28 04:05:26,066 | INFO     | **************************************
[2026-02-28 05:05:48] 2026-02-28 04:05:26,066 | INFO     | 
[2026-02-28 05:05:48] 2026-02-28 04:05:26,067 | INFO     | architecture information:
[2026-02-28 05:05:48] 2026-02-28 04:05:26,067 | INFO     | executing command: cat /etc/os-release
[2026-02-28 05:05:48] 2026-02-28 04:05:26,082 | INFO     | cat /etc/os-release:
[2026-02-28 05:05:48] NAME="CentOS Linux"
[2026-02-28 05:05:48] VERSION="7 (Core)"
[2026-02-28 05:05:48] ID="centos"
[2026-02-28 05:05:48] ID_LIKE="rhel fedora"
[2026-02-28 05:05:48] VERSION_ID="7"
[2026-02-28 05:05:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 05:05:48] ANSI_COLOR="0;31"
[2026-02-28 05:05:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 05:05:48] HOME_URL="https://www.centos.org/"
[2026-02-28 05:05:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 05:05:48] 
[2026-02-28 05:05:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 05:05:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 05:05:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 05:05:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 05:05:48] 
[2026-02-28 05:05:48] 2026-02-28 04:05:26,082 | INFO     | **************************************
[2026-02-28 05:05:48] 2026-02-28 04:05:26,586 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 05:05:48] 2026-02-28 04:05:26,605 | INFO     | sufficient remaining disk space (231030652928 B)
[2026-02-28 05:05:48] 2026-02-28 04:05:26,605 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 05:05:48] 2026-02-28 04:05:26,605 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 05:05:48] 2026-02-28 04:05:26,605 | INFO     | update_server=False
[2026-02-28 05:05:48] 2026-02-28 04:05:26,605 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 05:05:48] 2026-02-28 04:05:26,605 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 05:05:48] 2026-02-28 04:05:26,606 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 05:05:48] 2026-02-28 04:05:26,606 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 05:05:48] 2026-02-28 04:05:26,606 | INFO     | aborting loop
[2026-02-28 05:05:48] 2026-02-28 04:05:26,606 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-28 05:05:48] 2026-02-28 04:05:26,606 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 05:05:48] 2026-02-28 04:05:26,606 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 05:05:48] 2026-02-28 04:05:26,606 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 05:05:48] 2026-02-28 04:05:26,817 | INFO     | all payload control threads have been joined
[2026-02-28 05:05:48] 2026-02-28 04:05:26,950 | INFO     | all job control threads have been joined
[2026-02-28 05:05:48] 2026-02-28 04:05:27,295 | INFO     | all data control threads have been joined
[2026-02-28 05:05:48] 2026-02-28 04:05:27,611 | INFO     | [job] retrieve thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:27,611 | INFO     | [job] job monitor thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:27,661 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:27,805 | INFO     | [data] copytool_in thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:27,823 | INFO     | [payload] control thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:27,956 | INFO     | [job] control thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:28,038 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:28,131 | INFO     | [payload] validate_post thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:28,301 | INFO     | [data] control thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:28,612 | INFO     | [data] copytool_out thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:28,742 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:29,007 | INFO     | [job] validate thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:29,011 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:29,195 | INFO     | [payload] failed_post thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:29,533 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 05:05:48] 2026-02-28 04:05:30,539 | INFO     | [job] queue monitor thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:30,612 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 05:05:48] 2026-02-28 04:05:41,621 | INFO     | [monitor] cgroup control has ended
[2026-02-28 05:05:48] 2026-02-28 04:05:43,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139960719263552)>', '<ExcThread(monitor, started 139959939876608)>']
[2026-02-28 05:05:48] 2026-02-28 04:05:43,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 05:05:48] 2026-02-28 04:05:43,697 | INFO     | [monitor] control thread has ended
[2026-02-28 05:05:48] 2026-02-28 04:05:48,316 | INFO     | all workflow threads have been joined
[2026-02-28 05:05:48] 2026-02-28 04:05:48,316 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 05:05:48] 2026-02-28 04:05:48,317 | INFO     | traces error code: 0
[2026-02-28 05:05:48] 2026-02-28 04:05:48,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 05:05:48] 2026-02-28 04:05:48,396 [wrapper] ==== pilot stdout END ====
[2026-02-28 05:05:48] 2026-02-28 04:05:48,400 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 05:05:48] 2026-02-28 04:05:48,405 [wrapper] pilotpid: 666196
[2026-02-28 05:05:48] 2026-02-28 04:05:48,409 [wrapper] Pilot exit status: 0
[2026-02-28 05:05:48] 2026-02-28 04:05:48,421 [wrapper] pandaids: 7031261776
[2026-02-28 05:05:48] 2026-02-28 04:05:48,444 [wrapper] cleanup supervisor_pilot  676730 666197
[2026-02-28 05:05:48] 2026-02-28 04:05:48,448 [wrapper] Test setup, not cleaning
[2026-02-28 05:05:48] 2026-02-28 04:05:48,452 [wrapper] apfmon messages muted
[2026-02-28 05:05:48] 2026-02-28 04:05:48,456 [wrapper] ==== wrapper stdout END ====
[2026-02-28 05:05:48] 2026-02-28 04:05:48,460 [wrapper] ==== wrapper stderr END ====
[2026-02-28 05:05:48]  *** Error codes and diagnostics ***
[2026-02-28 05:05:48]     "exeErrorCode": 0,
[2026-02-28 05:05:48]     "exeErrorDiag": "",
[2026-02-28 05:05:48]     "pilotErrorCode": 0,
[2026-02-28 05:05:48]     "pilotErrorDiag": "",
[2026-02-28 05:05:48]  *** Listing of results directory ***
[2026-02-28 05:05:48] total 467440
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc    584627 Feb 27 06:46 pilot3.tar.gz
[2026-02-28 05:05:48] -rwx------ 1 boinc boinc     36322 Feb 27 06:46 runpilot2-wrapper.sh
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc      5111 Feb 27 06:48 queuedata.json
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc       100 Feb 28 03:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 05:05:48] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 03:42 run_atlas
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc       105 Feb 28 03:42 job.xml
[2026-02-28 05:05:48] -rw-r--r-- 2 boinc boinc 269308966 Feb 28 03:42 EVNT.48343779._000021.pool.root.1
[2026-02-28 05:05:48] drwxrwx--x 2 boinc boinc      4096 Feb 28 03:42 shared
[2026-02-28 05:05:48] -rw-r--r-- 2 boinc boinc    597975 Feb 28 03:42 input.tar.gz
[2026-02-28 05:05:48] -rw-r--r-- 2 boinc boinc     15845 Feb 28 03:42 start_atlas.sh
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc         0 Feb 28 03:42 boinc_setup_complete
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc      6377 Feb 28 03:42 init_data.xml
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc         0 Feb 28 03:42 boinc_lockfile
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc      2575 Feb 28 03:42 pandaJob.out
[2026-02-28 05:05:48] -rw------- 1 boinc boinc    998790 Feb 28 03:42 agis_schedconf.cvmfs.json
[2026-02-28 05:05:48] -rw------- 1 boinc boinc   1513015 Feb 28 03:42 agis_ddmendpoints.agis.ALL.json
[2026-02-28 05:05:48] -rw------- 1 boinc boinc       426 Feb 28 03:42 workernode_map.json
[2026-02-28 05:05:48] drwx------ 5 boinc boinc      4096 Feb 28 03:42 pilot3
[2026-02-28 05:05:48] -rw------- 1 boinc boinc        95 Feb 28 05:04 pilot_heartbeat.json
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc       529 Feb 28 05:04 boinc_task_state.xml
[2026-02-28 05:05:48] -rw------- 1 boinc boinc 203462019 Feb 28 05:05 HITS.48838610._000504.pool.root.1
[2026-02-28 05:05:48] -rw------- 1 boinc boinc      1021 Feb 28 05:05 memory_monitor_summary.json
[2026-02-28 05:05:48] -rw------- 1 boinc boinc    254935 Feb 28 05:05 log.48838610._000504.job.log.tgz.1
[2026-02-28 05:05:48] -rw------- 1 boinc boinc      6300 Feb 28 05:05 heartbeat.json
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc      8192 Feb 28 05:05 boinc_mmap_file
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc        27 Feb 28 05:05 wrapper_checkpoint.txt
[2026-02-28 05:05:48] -rw------- 1 boinc boinc      4552 Feb 28 05:05 pilotlog.txt
[2026-02-28 05:05:48] -rw------- 1 boinc boinc    727306 Feb 28 05:05 log.48838610._000504.job.log.1
[2026-02-28 05:05:48] -rw------- 1 boinc boinc       357 Feb 28 05:05 output.list
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc       620 Feb 28 05:05 runtime_log
[2026-02-28 05:05:48] -rw------- 1 boinc boinc   1003520 Feb 28 05:05 result.tar.gz
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc      8896 Feb 28 05:05 runtime_log.err
[2026-02-28 05:05:48] -rw------- 1 boinc boinc       657 Feb 28 05:05 02MMDmqr5F9n9Rq4apOajLDm4fhM0noT9bVooX4SDmxe2KDmvHSTdn.diag
[2026-02-28 05:05:48] -rw-r--r-- 1 boinc boinc     12549 Feb 28 05:05 stderr.txt
[2026-02-28 05:05:48] HITS file was successfully produced:
[2026-02-28 05:05:48] -rw------- 1 boinc boinc 203462019 Feb 28 05:05 shared/HITS.pool.root.1
[2026-02-28 05:05:48]  *** Contents of shared directory: ***
[2026-02-28 05:05:48] total 463280
[2026-02-28 05:05:48] -rw-r--r-- 2 boinc boinc 269308966 Feb 28 03:42 ATLAS.root_0
[2026-02-28 05:05:48] -rw-r--r-- 2 boinc boinc    597975 Feb 28 03:42 input.tar.gz
[2026-02-28 05:05:48] -rw-r--r-- 2 boinc boinc     15845 Feb 28 03:42 start_atlas.sh
[2026-02-28 05:05:48] -rw------- 1 boinc boinc 203462019 Feb 28 05:05 HITS.pool.root.1
[2026-02-28 05:05:48] -rw------- 1 boinc boinc   1003520 Feb 28 05:05 result.tar.gz
05:05:49 (662073): run_atlas exited; CPU time 18844.030138
05:05:49 (662073): called boinc_finish(0)

</stderr_txt>
]]>

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