Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:51:28 (328079): wrapper (7.7.26015): starting
04:51:28 (328079): wrapper: running run_atlas (--nthreads 2)
[2026-02-28 04:51:28] Arguments: --nthreads 2
[2026-02-28 04:51:28] Threads: 2
[2026-02-28 04:51:28] Checking for CVMFS
[2026-02-28 04:51:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 04:51:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 04:51:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 04:51:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 04:51:29] 2.9.2.0 6350 3700 58312 156718 3 50 24860870 36864000 0 130560 0 947059 99.969 152653 708 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 04:51:29] CVMFS is ok
[2026-02-28 04:51:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 04:51:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 04:51:29] Further information can be found at the LHC@home message board.
[2026-02-28 04:51:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 04:51:29] Checking for apptainer binary...
[2026-02-28 04:51:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 04:51:29] Running /usr/bin/apptainer --version
[2026-02-28 04:51:29] apptainer version 1.4.1-1.1
[2026-02-28 04:51:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 04:51:29] legendA165
[2026-02-28 04:51:29] apptainer works
[2026-02-28 04:51:29] Set ATHENA_PROC_NUMBER=2
[2026-02-28 04:51:29] Set ATHENA_CORE_NUMBER=2
[2026-02-28 04:51:29] Starting ATLAS job with PandaID=7031260447
[2026-02-28 04:51:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 07:16:25]  *** The last 200 lines of the pilot log: ***
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | job 7031260447 has completed (purged errors)
[2026-02-28 07:16:25] 2026-02-28 06:14:59,410 | INFO     | overall cleanup function is called
[2026-02-28 07:16:25] 2026-02-28 06:15:00,413 | INFO     | --- collectZombieJob: --- 10, [336509]
[2026-02-28 07:16:25] 2026-02-28 06:15:00,414 | INFO     | zombie collector waiting for pid 336509
[2026-02-28 07:16:25] 2026-02-28 06:15:00,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 07:16:25] 2026-02-28 06:15:00,414 | INFO     | collected zombie processes
[2026-02-28 07:16:25] 2026-02-28 06:15:00,415 | INFO     | will attempt to kill all subprocesses of pid=336509
[2026-02-28 07:16:25] 2026-02-28 06:15:00,444 | INFO     | process IDs to be killed: [336509] (in reverse order)
[2026-02-28 07:16:25] 2026-02-28 06:15:00,466 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 07:16:25] 2026-02-28 06:15:00,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 07:16:25] 2026-02-28 06:15:00,467 | INFO     | did not find any defunct processes belonging to 336509
[2026-02-28 07:16:25] 2026-02-28 06:15:00,467 | INFO     | did not find any defunct processes belonging to 336509
[2026-02-28 07:16:25] 2026-02-28 06:15:00,467 | INFO     | ready for new job
[2026-02-28 07:16:25] 2026-02-28 06:15:00,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 07:16:25] 2026-02-28 06:15:00,468 | INFO     | **************************************
[2026-02-28 07:16:25] 2026-02-28 06:15:00,468 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 07:16:25] 2026-02-28 06:15:00,468 | INFO     | **************************************
[2026-02-28 07:16:25] 2026-02-28 06:15:00,468 | INFO     | 
[2026-02-28 07:16:25] 2026-02-28 06:15:00,468 | INFO     | architecture information:
[2026-02-28 07:16:25] 2026-02-28 06:15:00,468 | INFO     | executing command: cat /etc/os-release
[2026-02-28 07:16:25] 2026-02-28 06:15:00,476 | INFO     | cat /etc/os-release:
[2026-02-28 07:16:25] NAME="CentOS Linux"
[2026-02-28 07:16:25] VERSION="7 (Core)"
[2026-02-28 07:16:25] ID="centos"
[2026-02-28 07:16:25] ID_LIKE="rhel fedora"
[2026-02-28 07:16:25] VERSION_ID="7"
[2026-02-28 07:16:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 07:16:25] ANSI_COLOR="0;31"
[2026-02-28 07:16:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 07:16:25] HOME_URL="https://www.centos.org/"
[2026-02-28 07:16:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 07:16:25] 
[2026-02-28 07:16:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 07:16:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 07:16:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 07:16:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 07:16:25] 
[2026-02-28 07:16:25] 2026-02-28 06:15:00,477 | INFO     | **************************************
[2026-02-28 07:16:25] 2026-02-28 06:15:00,980 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 07:16:25] 2026-02-28 06:15:00,992 | INFO     | sufficient remaining disk space (184846123008 B)
[2026-02-28 07:16:25] 2026-02-28 06:15:00,992 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 07:16:25] 2026-02-28 06:15:00,992 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 07:16:25] 2026-02-28 06:15:00,992 | INFO     | update_server=False
[2026-02-28 07:16:25] 2026-02-28 06:15:00,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 07:16:25] 2026-02-28 06:15:00,992 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 07:16:25] 2026-02-28 06:15:00,992 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 07:16:25] 2026-02-28 06:15:01,017 | INFO     | all data control threads have been joined
[2026-02-28 07:16:25] 2026-02-28 06:15:01,183 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 07:16:25] 2026-02-28 06:15:01,184 | INFO     | aborting loop
[2026-02-28 07:16:25] 2026-02-28 06:15:01,501 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 07:16:25] 2026-02-28 06:15:01,810 | INFO     | all payload control threads have been joined
[2026-02-28 07:16:25] 2026-02-28 06:15:01,845 | INFO     | all job control threads have been joined
[2026-02-28 07:16:25] 2026-02-28 06:15:01,998 | INFO     | [job] retrieve thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:01,998 | INFO     | [job] queue monitor thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,023 | INFO     | [data] control thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,102 | INFO     | [payload] failed_post thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,140 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,190 | INFO     | [job] job monitor thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,563 | INFO     | [job] validate thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,611 | INFO     | [payload] validate_post thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,685 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,744 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,815 | INFO     | [payload] control thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,851 | INFO     | [job] control thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:02,963 | INFO     | [data] copytool_in thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:03,507 | INFO     | [data] copytool_out thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:04,999 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:11,896 | INFO     | job.realtimelogging is not enabled
[2026-02-28 07:16:25] 2026-02-28 06:15:12,902 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 07:16:25] 2026-02-28 06:15:31,300 | INFO     | PID=332102 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 07:16:25] 2026-02-28 06:15:31,301 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 07:16:25] 2026-02-28 06:15:31,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 07:16:25] 2026-02-28 06:15:31,301 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 07:16:25] 2026-02-28 06:15:58,369 | INFO     | [monitor] cgroup control has ended
[2026-02-28 07:16:25] 2026-02-28 06:15:59,376 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245332399936)>', '<ExcThread(monitor, started 140244657608448)>']
[2026-02-28 07:16:25] 2026-02-28 06:15:59,449 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 07:16:25] 2026-02-28 06:15:59,450 | INFO     | [monitor] control thread has ended
[2026-02-28 07:16:25] 2026-02-28 06:16:04,401 | INFO     | all workflow threads have been joined
[2026-02-28 07:16:25] 2026-02-28 06:16:04,402 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 07:16:25] 2026-02-28 06:16:04,402 | INFO     | traces error code: 0
[2026-02-28 07:16:25] 2026-02-28 06:16:04,403 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 07:16:25] 2026-02-28 06:16:05,211 [wrapper] ==== pilot stdout END ====
[2026-02-28 07:16:25] 2026-02-28 06:16:05,213 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 07:16:25] 2026-02-28 06:16:05,216 [wrapper] pilotpid: 332102
[2026-02-28 07:16:25] 2026-02-28 06:16:05,218 [wrapper] Pilot exit status: 0
[2026-02-28 07:16:25] 2026-02-28 06:16:05,225 [wrapper] pandaids: 7031260447
[2026-02-28 07:16:25] 2026-02-28 06:16:05,246 [wrapper] cleanup supervisor_pilot  342013 332103
[2026-02-28 07:16:25] 2026-02-28 06:16:05,248 [wrapper] Test setup, not cleaning
[2026-02-28 07:16:25] 2026-02-28 06:16:05,250 [wrapper] apfmon messages muted
[2026-02-28 07:16:25] 2026-02-28 06:16:05,252 [wrapper] ==== wrapper stdout END ====
[2026-02-28 07:16:25] 2026-02-28 06:16:05,254 [wrapper] ==== wrapper stderr END ====
[2026-02-28 07:16:25]  *** Error codes and diagnostics ***
[2026-02-28 07:16:25]     "exeErrorCode": 0,
[2026-02-28 07:16:25]     "exeErrorDiag": "",
[2026-02-28 07:16:25]     "pilotErrorCode": 0,
[2026-02-28 07:16:25]     "pilotErrorDiag": "",
[2026-02-28 07:16:25]  *** Listing of results directory ***
[2026-02-28 07:16:25] total 473836
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc    584627 Feb 27 06:46 pilot3.tar.gz
[2026-02-28 07:16:25] -rwx------ 1 boinc boinc     36322 Feb 27 06:46 runpilot2-wrapper.sh
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc      5111 Feb 27 06:47 queuedata.json
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc       100 Feb 28 04:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 07:16:25] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 04:51 run_atlas
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc       105 Feb 28 04:51 job.xml
[2026-02-28 07:16:25] -rw-r--r-- 2 boinc boinc 270359546 Feb 28 04:51 EVNT.48343704._000029.pool.root.1
[2026-02-28 07:16:25] -rw-r--r-- 2 boinc boinc    597953 Feb 28 04:51 input.tar.gz
[2026-02-28 07:16:25] -rw-r--r-- 2 boinc boinc     15845 Feb 28 04:51 start_atlas.sh
[2026-02-28 07:16:25] drwxrwx--x 2 boinc boinc      4096 Feb 28 04:51 shared
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc         0 Feb 28 04:51 boinc_setup_complete
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc      6209 Feb 28 04:51 init_data.xml
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc         0 Feb 28 04:51 boinc_lockfile
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc      2572 Feb 28 04:51 pandaJob.out
[2026-02-28 07:16:25] -rw------- 1 boinc boinc    998782 Feb 28 04:51 agis_schedconf.cvmfs.json
[2026-02-28 07:16:25] -rw------- 1 boinc boinc   1513015 Feb 28 04:51 agis_ddmendpoints.agis.ALL.json
[2026-02-28 07:16:25] -rw------- 1 boinc boinc       422 Feb 28 04:51 workernode_map.json
[2026-02-28 07:16:25] drwx------ 5 boinc boinc      4096 Feb 28 04:51 pilot3
[2026-02-28 07:16:25] -rw------- 1 boinc boinc 207899120 Feb 28 07:14 HITS.48838536._000717.pool.root.1
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc       529 Feb 28 07:14 boinc_task_state.xml
[2026-02-28 07:16:25] -rw------- 1 boinc boinc      1015 Feb 28 07:14 memory_monitor_summary.json
[2026-02-28 07:16:25] -rw------- 1 boinc boinc    295207 Feb 28 07:14 log.48838536._000717.job.log.tgz.1
[2026-02-28 07:16:25] -rw------- 1 boinc boinc      6297 Feb 28 07:14 heartbeat.json
[2026-02-28 07:16:25] -rw------- 1 boinc boinc        95 Feb 28 07:15 pilot_heartbeat.json
[2026-02-28 07:16:25] -rw------- 1 boinc boinc      4819 Feb 28 07:16 pilotlog.txt
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc      8192 Feb 28 07:16 boinc_mmap_file
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc        27 Feb 28 07:16 wrapper_checkpoint.txt
[2026-02-28 07:16:25] -rw------- 1 boinc boinc   1227809 Feb 28 07:16 log.48838536._000717.job.log.1
[2026-02-28 07:16:25] -rw------- 1 boinc boinc       357 Feb 28 07:16 output.list
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc       620 Feb 28 07:16 runtime_log
[2026-02-28 07:16:25] -rw------- 1 boinc boinc   1536000 Feb 28 07:16 result.tar.gz
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc      8916 Feb 28 07:16 runtime_log.err
[2026-02-28 07:16:25] -rw------- 1 boinc boinc       662 Feb 28 07:16 m5PODmhr5F9n9Rq4apOajLDm4fhM0noT9bVooX4SDmFd2KDm1LILyn.diag
[2026-02-28 07:16:25] -rw-r--r-- 1 boinc boinc     11903 Feb 28 07:16 stderr.txt
[2026-02-28 07:16:25] HITS file was successfully produced:
[2026-02-28 07:16:25] -rw------- 1 boinc boinc 207899120 Feb 28 07:14 shared/HITS.pool.root.1
[2026-02-28 07:16:25]  *** Contents of shared directory: ***
[2026-02-28 07:16:25] total 469152
[2026-02-28 07:16:25] -rw-r--r-- 2 boinc boinc 270359546 Feb 28 04:51 ATLAS.root_0
[2026-02-28 07:16:25] -rw-r--r-- 2 boinc boinc    597953 Feb 28 04:51 input.tar.gz
[2026-02-28 07:16:25] -rw-r--r-- 2 boinc boinc     15845 Feb 28 04:51 start_atlas.sh
[2026-02-28 07:16:25] -rw------- 1 boinc boinc 207899120 Feb 28 07:14 HITS.pool.root.1
[2026-02-28 07:16:25] -rw------- 1 boinc boinc   1536000 Feb 28 07:16 result.tar.gz
07:16:27 (328079): run_atlas exited; CPU time 16771.863954
07:16:27 (328079): called boinc_finish(0)

</stderr_txt>
]]>

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