Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:31:20 (351968): wrapper (7.7.26015): starting
21:31:20 (351968): wrapper: running run_atlas (--nthreads 4)
[2026-02-27 21:31:20] Arguments: --nthreads 4
[2026-02-27 21:31:20] Threads: 4
[2026-02-27 21:31:20] Checking for CVMFS
[2026-02-27 21:31:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 21:31:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 21:31:20] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 21:31:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 21:31:20] 2.9.2.0 4606 1886 89272 156707 2 188 32686376 36864001 0 130560 0 926520 99.983 77822 21414 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 21:31:20] CVMFS is ok
[2026-02-27 21:31:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 21:31:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 21:31:20] Further information can be found at the LHC@home message board.
[2026-02-27 21:31:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 21:31:20] Checking for apptainer binary...
[2026-02-27 21:31:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 21:31:20] Running /usr/bin/apptainer --version
[2026-02-27 21:31:20] apptainer version 1.4.1-1.1
[2026-02-27 21:31:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 21:31:20] thA373a
[2026-02-27 21:31:20] apptainer works
[2026-02-27 21:31:20] Set ATHENA_PROC_NUMBER=4
[2026-02-27 21:31:20] Set ATHENA_CORE_NUMBER=4
[2026-02-27 21:31:20] Starting ATLAS job with PandaID=7021130049
[2026-02-27 21:31:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 21:38:56]  *** The last 200 lines of the pilot log: ***
[2026-02-27 21:38:56] 2026-02-27 20:38:27,622 | INFO     | collected zombie processes
[2026-02-27 21:38:56] 2026-02-27 20:38:27,622 | INFO     | will attempt to kill all subprocesses of pid=360271
[2026-02-27 21:38:56] 2026-02-27 20:38:27,671 | INFO     | process IDs to be killed: [360271] (in reverse order)
[2026-02-27 21:38:56] 2026-02-27 20:38:27,706 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 21:38:56] 2026-02-27 20:38:27,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 21:38:56] 2026-02-27 20:38:27,709 | INFO     | did not find any defunct processes belonging to 360271
[2026-02-27 21:38:56] 2026-02-27 20:38:27,710 | INFO     | did not find any defunct processes belonging to 360271
[2026-02-27 21:38:56] 2026-02-27 20:38:27,710 | INFO     | ready for new job
[2026-02-27 21:38:56] 2026-02-27 20:38:27,710 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 21:38:56] 2026-02-27 20:38:27,711 | INFO     | **************************************
[2026-02-27 21:38:56] 2026-02-27 20:38:27,711 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 21:38:56] 2026-02-27 20:38:27,711 | INFO     | **************************************
[2026-02-27 21:38:56] 2026-02-27 20:38:27,711 | INFO     | 
[2026-02-27 21:38:56] 2026-02-27 20:38:27,711 | INFO     | architecture information:
[2026-02-27 21:38:56] 2026-02-27 20:38:27,712 | INFO     | executing command: cat /etc/os-release
[2026-02-27 21:38:56] 2026-02-27 20:38:27,726 | INFO     | cat /etc/os-release:
[2026-02-27 21:38:56] NAME="CentOS Linux"
[2026-02-27 21:38:56] VERSION="7 (Core)"
[2026-02-27 21:38:56] ID="centos"
[2026-02-27 21:38:56] ID_LIKE="rhel fedora"
[2026-02-27 21:38:56] VERSION_ID="7"
[2026-02-27 21:38:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 21:38:56] ANSI_COLOR="0;31"
[2026-02-27 21:38:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 21:38:56] HOME_URL="https://www.centos.org/"
[2026-02-27 21:38:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 21:38:56] 
[2026-02-27 21:38:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 21:38:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 21:38:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 21:38:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 21:38:56] 
[2026-02-27 21:38:56] 2026-02-27 20:38:27,727 | INFO     | **************************************
[2026-02-27 21:38:56] 2026-02-27 20:38:27,955 | INFO     | all data control threads have been joined
[2026-02-27 21:38:56] 2026-02-27 20:38:28,224 | INFO     | all job control threads have been joined
[2026-02-27 21:38:56] 2026-02-27 20:38:28,341 | INFO     | [payload] control thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:28,376 | INFO     | [job] job monitor thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:28,732 | INFO     | [job] retrieve thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:28,960 | INFO     | [data] control thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:29,082 | INFO     | [payload] validate_post thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:29,107 | INFO     | [job] validate thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:29,110 | INFO     | [data] copytool_out thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:29,215 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:29,227 | INFO     | [job] control thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:29,271 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:29,404 | INFO     | [data] copytool_in thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:29,427 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:29,529 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 21:38:56] 2026-02-27 20:38:29,575 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:29,617 | INFO     | [payload] failed_post thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:31,590 | INFO     | [monitor] cgroup control has ended
[2026-02-27 21:38:56] 2026-02-27 20:38:33,536 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:33,638 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140084347987776)>', '<ExcThread(queue_monitor, started 140083537618688)>']
[2026-02-27 21:38:56] 2026-02-27 20:38:35,649 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140084347987776)>', '<ExcThread(queue_monitor, started 140083537618688)>']
[2026-02-27 21:38:56] 2026-02-27 20:38:37,655 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140084347987776)>', '<ExcThread(queue_monitor, started 140083537618688)>']
[2026-02-27 21:38:56] 2026-02-27 20:38:39,663 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140084347987776)>', '<ExcThread(queue_monitor, started 140083537618688)>']
[2026-02-27 21:38:56] 2026-02-27 20:38:41,674 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140084347987776)>', '<ExcThread(queue_monitor, started 140083537618688)>']
[2026-02-27 21:38:56] 2026-02-27 20:38:43,684 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140084347987776)>', '<ExcThread(queue_monitor, started 140083537618688)>']
[2026-02-27 21:38:56] 2026-02-27 20:38:45,695 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140084347987776)>', '<ExcThread(queue_monitor, started 140083537618688)>']
[2026-02-27 21:38:56] 2026-02-27 20:38:47,706 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140084347987776)>', '<ExcThread(queue_monitor, started 140083537618688)>']
[2026-02-27 21:38:56] 2026-02-27 20:38:49,718 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140084347987776)>', '<ExcThread(queue_monitor, started 140083537618688)>']
[2026-02-27 21:38:56] 2026-02-27 20:38:50,706 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140084347987776)>', '<ExcThread(queue_monitor, started 140083537618688)>']
[2026-02-27 21:38:56] 2026-02-27 20:38:50,706 | INFO     | [job] queue monitor thread has finished
[2026-02-27 21:38:56] 2026-02-27 20:38:51,728 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140084347987776)>'])
[2026-02-27 21:38:56] 2026-02-27 20:38:56,754 | INFO     | all workflow threads have been joined
[2026-02-27 21:38:56] 2026-02-27 20:38:56,754 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 21:38:56] 2026-02-27 20:38:56,755 | INFO     | traces error code: 0
[2026-02-27 21:38:56] 2026-02-27 20:38:56,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 21:38:56] 2026-02-27 20:38:56,832 [wrapper] ==== pilot stdout END ====
[2026-02-27 21:38:56] 2026-02-27 20:38:56,837 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 21:38:56] 2026-02-27 20:38:56,840 [wrapper] pilotpid: 355763
[2026-02-27 21:38:56] 2026-02-27 20:38:56,844 [wrapper] Pilot exit status: 0
[2026-02-27 21:38:56] 2026-02-27 20:38:56,855 [wrapper] pandaids: 7021130049
[2026-02-27 21:38:56] 2026-02-27 20:38:56,877 [wrapper] cleanup supervisor_pilot  355769 355764
[2026-02-27 21:38:56] 2026-02-27 20:38:56,881 [wrapper] Test setup, not cleaning
[2026-02-27 21:38:56] 2026-02-27 20:38:56,885 [wrapper] apfmon messages muted
[2026-02-27 21:38:56] 2026-02-27 20:38:56,889 [wrapper] ==== wrapper stdout END ====
[2026-02-27 21:38:56] 2026-02-27 20:38:56,892 [wrapper] ==== wrapper stderr END ====
[2026-02-27 21:38:56]  *** Error codes and diagnostics ***
[2026-02-27 21:38:56]     "exeErrorCode": 65,
[2026-02-27 21:38:56]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 7923.28 KB/s",
[2026-02-27 21:38:56]     "pilotErrorCode": 1305,
[2026-02-27 21:38:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2026-02-27 21:38:56]  *** Listing of results directory ***
[2026-02-27 21:38:56] total 665452
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc    584627 Feb 19 22:53 pilot3.tar.gz
[2026-02-27 21:38:56] -rwx------ 1 boinc boinc     36322 Feb 19 22:57 runpilot2-wrapper.sh
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc      5111 Feb 19 23:00 queuedata.json
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc       100 Feb 27 21:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 21:38:56] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 21:31 run_atlas
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc       105 Feb 27 21:31 job.xml
[2026-02-27 21:38:56] -rw-r--r-- 2 boinc boinc 677013588 Feb 27 21:31 EVNT.48508760._000978.pool.root.1
[2026-02-27 21:38:56] -rw-r--r-- 2 boinc boinc    597957 Feb 27 21:31 input.tar.gz
[2026-02-27 21:38:56] -rw-r--r-- 2 boinc boinc     15845 Feb 27 21:31 start_atlas.sh
[2026-02-27 21:38:56] drwxrwx--x 2 boinc boinc      4096 Feb 27 21:31 shared
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc         0 Feb 27 21:31 boinc_setup_complete
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc      6377 Feb 27 21:31 init_data.xml
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc         0 Feb 27 21:31 boinc_lockfile
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc      2551 Feb 27 21:31 pandaJob.out
[2026-02-27 21:38:56] -rw------- 1 boinc boinc    998790 Feb 27 21:31 agis_schedconf.cvmfs.json
[2026-02-27 21:38:56] -rw------- 1 boinc boinc   1513015 Feb 27 21:31 agis_ddmendpoints.agis.ALL.json
[2026-02-27 21:38:56] -rw------- 1 boinc boinc       422 Feb 27 21:31 workernode_map.json
[2026-02-27 21:38:56] drwx------ 5 boinc boinc      4096 Feb 27 21:31 pilot3
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc       527 Feb 27 21:36 boinc_task_state.xml
[2026-02-27 21:38:56] -rw------- 1 boinc boinc      1000 Feb 27 21:36 memory_monitor_summary.json
[2026-02-27 21:38:56] -rw------- 1 boinc boinc    131964 Feb 27 21:36 log.48508763._051161.job.log.tgz.1
[2026-02-27 21:38:56] -rw------- 1 boinc boinc        95 Feb 27 21:37 pilot_heartbeat.json
[2026-02-27 21:38:56] -rw------- 1 boinc boinc      8092 Feb 27 21:38 heartbeat.json
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc        24 Feb 27 21:38 wrapper_checkpoint.txt
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc      8192 Feb 27 21:38 boinc_mmap_file
[2026-02-27 21:38:56] -rw------- 1 boinc boinc      4730 Feb 27 21:38 pilotlog.txt
[2026-02-27 21:38:56] -rw------- 1 boinc boinc    115510 Feb 27 21:38 log.48508763._051161.job.log.1
[2026-02-27 21:38:56] -rw------- 1 boinc boinc       188 Feb 27 21:38 output.list
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc       620 Feb 27 21:38 runtime_log
[2026-02-27 21:38:56] -rw------- 1 boinc boinc    266240 Feb 27 21:38 result.tar.gz
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc      8748 Feb 27 21:38 runtime_log.err
[2026-02-27 21:38:56] -rw------- 1 boinc boinc       651 Feb 27 21:38 XVJMDmQCRD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmDpyKDmE9U4Fm.diag
[2026-02-27 21:38:56] -rw-r--r-- 1 boinc boinc     10707 Feb 27 21:38 stderr.txt
[2026-02-27 21:38:56] No HITS result produced
[2026-02-27 21:38:56]  *** Contents of shared directory: ***
[2026-02-27 21:38:56] total 662012
[2026-02-27 21:38:56] -rw-r--r-- 2 boinc boinc 677013588 Feb 27 21:31 ATLAS.root_0
[2026-02-27 21:38:56] -rw-r--r-- 2 boinc boinc    597957 Feb 27 21:31 input.tar.gz
[2026-02-27 21:38:56] -rw-r--r-- 2 boinc boinc     15845 Feb 27 21:31 start_atlas.sh
[2026-02-27 21:38:56] -rw------- 1 boinc boinc    266240 Feb 27 21:38 result.tar.gz
21:38:58 (351968): run_atlas exited; CPU time 148.652955
21:38:58 (351968): called boinc_finish(0)

</stderr_txt>
]]>

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