Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:21:25 (313796): wrapper (7.7.26015): starting
02:21:25 (313796): wrapper: running run_atlas (--nthreads 2)
[2026-02-28 02:21:25] Arguments: --nthreads 2
[2026-02-28 02:21:25] Threads: 2
[2026-02-28 02:21:25] Checking for CVMFS
[2026-02-28 02:21:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 02:21:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 02:21:25] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 02:21:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 02:21:25] 2.9.2.0 6350 3550 58452 156715 1 49 24846883 36864000 0 130560 0 906095 99.968 148619 705 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-28 02:21:25] CVMFS is ok
[2026-02-28 02:21:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 02:21:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 02:21:25] Further information can be found at the LHC@home message board.
[2026-02-28 02:21:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 02:21:25] Checking for apptainer binary...
[2026-02-28 02:21:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 02:21:25] Running /usr/bin/apptainer --version
[2026-02-28 02:21:25] apptainer version 1.4.1-1.1
[2026-02-28 02:21:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 02:21:25] legendA165
[2026-02-28 02:21:25] apptainer works
[2026-02-28 02:21:25] Set ATHENA_PROC_NUMBER=2
[2026-02-28 02:21:25] Set ATHENA_CORE_NUMBER=2
[2026-02-28 02:21:25] Starting ATLAS job with PandaID=7031198547
[2026-02-28 02:21:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 04:51:04]  *** The last 200 lines of the pilot log: ***
[2026-02-28 04:51:04] 2026-02-28 03:49:57,105 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | job 7031198547 has completed (purged errors)
[2026-02-28 04:51:04] 2026-02-28 03:49:57,117 | INFO     | overall cleanup function is called
[2026-02-28 04:51:04] 2026-02-28 03:49:58,119 | INFO     | --- collectZombieJob: --- 10, [322239]
[2026-02-28 04:51:04] 2026-02-28 03:49:58,120 | INFO     | zombie collector waiting for pid 322239
[2026-02-28 04:51:04] 2026-02-28 03:49:58,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 04:51:04] 2026-02-28 03:49:58,120 | INFO     | collected zombie processes
[2026-02-28 04:51:04] 2026-02-28 03:49:58,120 | INFO     | will attempt to kill all subprocesses of pid=322239
[2026-02-28 04:51:04] 2026-02-28 03:49:58,149 | INFO     | process IDs to be killed: [322239] (in reverse order)
[2026-02-28 04:51:04] 2026-02-28 03:49:58,171 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 04:51:04] 2026-02-28 03:49:58,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 04:51:04] 2026-02-28 03:49:58,174 | INFO     | did not find any defunct processes belonging to 322239
[2026-02-28 04:51:04] 2026-02-28 03:49:58,176 | INFO     | did not find any defunct processes belonging to 322239
[2026-02-28 04:51:04] 2026-02-28 03:49:58,177 | INFO     | ready for new job
[2026-02-28 04:51:04] 2026-02-28 03:49:58,177 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 04:51:04] 2026-02-28 03:49:58,179 | INFO     | **************************************
[2026-02-28 04:51:04] 2026-02-28 03:49:58,179 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 04:51:04] 2026-02-28 03:49:58,179 | INFO     | **************************************
[2026-02-28 04:51:04] 2026-02-28 03:49:58,179 | INFO     | 
[2026-02-28 04:51:04] 2026-02-28 03:49:58,180 | INFO     | architecture information:
[2026-02-28 04:51:04] 2026-02-28 03:49:58,181 | INFO     | executing command: cat /etc/os-release
[2026-02-28 04:51:04] 2026-02-28 03:49:58,209 | INFO     | cat /etc/os-release:
[2026-02-28 04:51:04] NAME="CentOS Linux"
[2026-02-28 04:51:04] VERSION="7 (Core)"
[2026-02-28 04:51:04] ID="centos"
[2026-02-28 04:51:04] ID_LIKE="rhel fedora"
[2026-02-28 04:51:04] VERSION_ID="7"
[2026-02-28 04:51:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 04:51:04] ANSI_COLOR="0;31"
[2026-02-28 04:51:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 04:51:04] HOME_URL="https://www.centos.org/"
[2026-02-28 04:51:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 04:51:04] 
[2026-02-28 04:51:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 04:51:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 04:51:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 04:51:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 04:51:04] 
[2026-02-28 04:51:04] 2026-02-28 03:49:58,209 | INFO     | **************************************
[2026-02-28 04:51:04] 2026-02-28 03:49:58,713 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 04:51:04] 2026-02-28 03:49:58,725 | INFO     | sufficient remaining disk space (184819908608 B)
[2026-02-28 04:51:04] 2026-02-28 03:49:58,725 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 04:51:04] 2026-02-28 03:49:58,725 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 04:51:04] 2026-02-28 03:49:58,725 | INFO     | update_server=False
[2026-02-28 04:51:04] 2026-02-28 03:49:58,725 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 04:51:04] 2026-02-28 03:49:58,725 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 04:51:04] 2026-02-28 03:49:58,725 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 04:51:04] 2026-02-28 03:49:59,008 | INFO     | all data control threads have been joined
[2026-02-28 04:51:04] 2026-02-28 03:49:59,140 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 04:51:04] 2026-02-28 03:49:59,141 | INFO     | aborting loop
[2026-02-28 04:51:04] 2026-02-28 03:49:59,355 | INFO     | all payload control threads have been joined
[2026-02-28 04:51:04] 2026-02-28 03:49:59,590 | INFO     | all job control threads have been joined
[2026-02-28 04:51:04] 2026-02-28 03:49:59,729 | INFO     | [job] queue monitor thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:49:59,730 | INFO     | [job] retrieve thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:49:59,811 | INFO     | [data] copytool_in thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:00,014 | INFO     | [data] control thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:00,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 04:51:04] 2026-02-28 03:50:00,100 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:00,145 | INFO     | [job] job monitor thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:00,361 | INFO     | [payload] control thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:00,403 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:00,527 | INFO     | [payload] validate_post thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:00,597 | INFO     | [job] control thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:00,853 | INFO     | [job] validate thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:00,860 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:00,972 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:01,043 | INFO     | [payload] failed_post thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:02,049 | INFO     | [data] copytool_out thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:02,733 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 04:51:04] 2026-02-28 03:50:29,421 | INFO     | PID=317827 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 04:51:04] 2026-02-28 03:50:29,421 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 04:51:04] 2026-02-28 03:50:29,421 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 04:51:04] 2026-02-28 03:50:29,421 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 04:51:04] 2026-02-28 03:50:58,729 | INFO     | [monitor] cgroup control has ended
[2026-02-28 04:51:04] 2026-02-28 03:50:58,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140324069128000)>', '<ExcThread(monitor, started 140323334375168)>']
[2026-02-28 04:51:04] 2026-02-28 03:50:59,574 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 04:51:04] 2026-02-28 03:50:59,575 | INFO     | [monitor] control thread has ended
[2026-02-28 04:51:04] 2026-02-28 03:51:03,871 | INFO     | all workflow threads have been joined
[2026-02-28 04:51:04] 2026-02-28 03:51:03,872 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 04:51:04] 2026-02-28 03:51:03,872 | INFO     | traces error code: 0
[2026-02-28 04:51:04] 2026-02-28 03:51:03,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 04:51:04] 2026-02-28 03:51:03,915 [wrapper] ==== pilot stdout END ====
[2026-02-28 04:51:04] 2026-02-28 03:51:03,917 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 04:51:04] 2026-02-28 03:51:03,920 [wrapper] pilotpid: 317827
[2026-02-28 04:51:04] 2026-02-28 03:51:03,922 [wrapper] Pilot exit status: 0
[2026-02-28 04:51:04] 2026-02-28 03:51:03,928 [wrapper] pandaids: 7031198547
[2026-02-28 04:51:04] 2026-02-28 03:51:03,942 [wrapper] cleanup supervisor_pilot  327875 317828
[2026-02-28 04:51:04] 2026-02-28 03:51:03,943 [wrapper] Test setup, not cleaning
[2026-02-28 04:51:04] 2026-02-28 03:51:03,945 [wrapper] apfmon messages muted
[2026-02-28 04:51:04] 2026-02-28 03:51:03,947 [wrapper] ==== wrapper stdout END ====
[2026-02-28 04:51:04] 2026-02-28 03:51:03,949 [wrapper] ==== wrapper stderr END ====
[2026-02-28 04:51:04]  *** Error codes and diagnostics ***
[2026-02-28 04:51:04]     "exeErrorCode": 0,
[2026-02-28 04:51:04]     "exeErrorDiag": "",
[2026-02-28 04:51:04]     "pilotErrorCode": 0,
[2026-02-28 04:51:04]     "pilotErrorDiag": "",
[2026-02-28 04:51:04]  *** Listing of results directory ***
[2026-02-28 04:51:04] total 501852
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc    584627 Feb 27 05:02 pilot3.tar.gz
[2026-02-28 04:51:04] -rwx------ 1 boinc boinc     36322 Feb 27 05:05 runpilot2-wrapper.sh
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc      5111 Feb 27 05:08 queuedata.json
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc       100 Feb 28 02:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 04:51:04] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 02:21 run_atlas
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc       105 Feb 28 02:21 job.xml
[2026-02-28 04:51:04] -rw-r--r-- 2 boinc boinc 287374703 Feb 28 02:21 EVNT.48220205._000053.pool.root.1
[2026-02-28 04:51:04] -rw-r--r-- 2 boinc boinc    597974 Feb 28 02:21 input.tar.gz
[2026-02-28 04:51:04] -rw-r--r-- 2 boinc boinc     15845 Feb 28 02:21 start_atlas.sh
[2026-02-28 04:51:04] drwxrwx--x 2 boinc boinc      4096 Feb 28 02:21 shared
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc         0 Feb 28 02:21 boinc_setup_complete
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc      6209 Feb 28 02:21 init_data.xml
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc         0 Feb 28 02:21 boinc_lockfile
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc      2587 Feb 28 02:21 pandaJob.out
[2026-02-28 04:51:04] -rw------- 1 boinc boinc    998790 Feb 28 02:21 agis_schedconf.cvmfs.json
[2026-02-28 04:51:04] -rw------- 1 boinc boinc   1513015 Feb 28 02:21 agis_ddmendpoints.agis.ALL.json
[2026-02-28 04:51:04] -rw------- 1 boinc boinc       429 Feb 28 02:21 workernode_map.json
[2026-02-28 04:51:04] drwx------ 5 boinc boinc      4096 Feb 28 02:21 pilot3
[2026-02-28 04:51:04] -rw------- 1 boinc boinc 219507137 Feb 28 04:49 HITS.48838581._001009.pool.root.1
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc       529 Feb 28 04:49 boinc_task_state.xml
[2026-02-28 04:51:04] -rw------- 1 boinc boinc      1015 Feb 28 04:49 memory_monitor_summary.json
[2026-02-28 04:51:04] -rw------- 1 boinc boinc    288875 Feb 28 04:49 log.48838581._001009.job.log.tgz.1
[2026-02-28 04:51:04] -rw------- 1 boinc boinc      6312 Feb 28 04:49 heartbeat.json
[2026-02-28 04:51:04] -rw------- 1 boinc boinc        95 Feb 28 04:49 pilot_heartbeat.json
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc      8192 Feb 28 04:50 boinc_mmap_file
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc        27 Feb 28 04:50 wrapper_checkpoint.txt
[2026-02-28 04:51:04] -rw------- 1 boinc boinc      4747 Feb 28 04:51 pilotlog.txt
[2026-02-28 04:51:04] -rw------- 1 boinc boinc   1259793 Feb 28 04:51 log.48838581._001009.job.log.1
[2026-02-28 04:51:04] -rw------- 1 boinc boinc       357 Feb 28 04:51 output.list
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc       620 Feb 28 04:51 runtime_log
[2026-02-28 04:51:04] -rw------- 1 boinc boinc   1566720 Feb 28 04:51 result.tar.gz
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc      8916 Feb 28 04:51 runtime_log.err
[2026-02-28 04:51:04] -rw------- 1 boinc boinc       662 Feb 28 04:51 kUjMDmmH4F9n9Rq4apOajLDm4fhM0noT9bVooX4SDmJX2KDm7HZyrm.diag
[2026-02-28 04:51:04] -rw-r--r-- 1 boinc boinc     12922 Feb 28 04:51 stderr.txt
[2026-02-28 04:51:04] HITS file was successfully produced:
[2026-02-28 04:51:04] -rw------- 1 boinc boinc 219507137 Feb 28 04:49 shared/HITS.pool.root.1
[2026-02-28 04:51:04]  *** Contents of shared directory: ***
[2026-02-28 04:51:04] total 497140
[2026-02-28 04:51:04] -rw-r--r-- 2 boinc boinc 287374703 Feb 28 02:21 ATLAS.root_0
[2026-02-28 04:51:04] -rw-r--r-- 2 boinc boinc    597974 Feb 28 02:21 input.tar.gz
[2026-02-28 04:51:04] -rw-r--r-- 2 boinc boinc     15845 Feb 28 02:21 start_atlas.sh
[2026-02-28 04:51:04] -rw------- 1 boinc boinc 219507137 Feb 28 04:49 HITS.pool.root.1
[2026-02-28 04:51:04] -rw------- 1 boinc boinc   1566720 Feb 28 04:51 result.tar.gz
04:51:05 (313796): run_atlas exited; CPU time 17296.896905
04:51:05 (313796): called boinc_finish(0)

</stderr_txt>
]]>

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