Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:11:54 (403953): wrapper (7.7.26015): starting
19:11:54 (403953): wrapper: running run_atlas (--nthreads 4)
[2026-02-27 19:11:54] Arguments: --nthreads 4
[2026-02-27 19:11:54] Threads: 4
[2026-02-27 19:11:54] Checking for CVMFS
[2026-02-27 19:11:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 19:11:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 19:11:55] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 19:11:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 19:11:55] 2.9.2.0 3030 2526 90732 156703 2 50 27400022 36864000 0 130560 0 1121511 99.982 97332 15890 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 19:11:55] CVMFS is ok
[2026-02-27 19:11:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 19:11:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 19:11:55] Further information can be found at the LHC@home message board.
[2026-02-27 19:11:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 19:11:55] Checking for apptainer binary...
[2026-02-27 19:11:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 19:11:55] Running /usr/bin/apptainer --version
[2026-02-27 19:11:55] apptainer version 1.4.1-1.1
[2026-02-27 19:11:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 19:11:55] atlasA215b
[2026-02-27 19:11:55] apptainer works
[2026-02-27 19:11:55] Set ATHENA_PROC_NUMBER=4
[2026-02-27 19:11:55] Set ATHENA_CORE_NUMBER=4
[2026-02-27 19:11:55] Starting ATLAS job with PandaID=7019524844
[2026-02-27 19:11:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 20:55:21]  *** The last 200 lines of the pilot log: ***
[2026-02-27 20:55:21] 2026-02-27 19:54:38,719 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | job 7019524844 has completed (purged errors)
[2026-02-27 20:55:21] 2026-02-27 19:54:38,720 | INFO     | overall cleanup function is called
[2026-02-27 20:55:21] 2026-02-27 19:54:39,723 | INFO     | --- collectZombieJob: --- 10, [412581]
[2026-02-27 20:55:21] 2026-02-27 19:54:39,723 | INFO     | zombie collector waiting for pid 412581
[2026-02-27 20:55:21] 2026-02-27 19:54:39,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 20:55:21] 2026-02-27 19:54:39,723 | INFO     | collected zombie processes
[2026-02-27 20:55:21] 2026-02-27 19:54:39,723 | INFO     | will attempt to kill all subprocesses of pid=412581
[2026-02-27 20:55:21] 2026-02-27 19:54:39,764 | INFO     | process IDs to be killed: [412581] (in reverse order)
[2026-02-27 20:55:21] 2026-02-27 19:54:39,797 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 20:55:21] 2026-02-27 19:54:39,798 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 20:55:21] 2026-02-27 19:54:39,799 | INFO     | did not find any defunct processes belonging to 412581
[2026-02-27 20:55:21] 2026-02-27 19:54:39,800 | INFO     | did not find any defunct processes belonging to 412581
[2026-02-27 20:55:21] 2026-02-27 19:54:39,800 | INFO     | ready for new job
[2026-02-27 20:55:21] 2026-02-27 19:54:39,800 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 20:55:21] 2026-02-27 19:54:39,801 | INFO     | **************************************
[2026-02-27 20:55:21] 2026-02-27 19:54:39,801 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 20:55:21] 2026-02-27 19:54:39,801 | INFO     | **************************************
[2026-02-27 20:55:21] 2026-02-27 19:54:39,801 | INFO     | 
[2026-02-27 20:55:21] 2026-02-27 19:54:39,802 | INFO     | architecture information:
[2026-02-27 20:55:21] 2026-02-27 19:54:39,802 | INFO     | executing command: cat /etc/os-release
[2026-02-27 20:55:21] 2026-02-27 19:54:39,817 | INFO     | cat /etc/os-release:
[2026-02-27 20:55:21] NAME="CentOS Linux"
[2026-02-27 20:55:21] VERSION="7 (Core)"
[2026-02-27 20:55:21] ID="centos"
[2026-02-27 20:55:21] ID_LIKE="rhel fedora"
[2026-02-27 20:55:21] VERSION_ID="7"
[2026-02-27 20:55:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 20:55:21] ANSI_COLOR="0;31"
[2026-02-27 20:55:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 20:55:21] HOME_URL="https://www.centos.org/"
[2026-02-27 20:55:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 20:55:21] 
[2026-02-27 20:55:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 20:55:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 20:55:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 20:55:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 20:55:21] 
[2026-02-27 20:55:21] 2026-02-27 19:54:39,818 | INFO     | **************************************
[2026-02-27 20:55:21] 2026-02-27 19:54:40,321 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-27 20:55:21] 2026-02-27 19:54:40,339 | INFO     | sufficient remaining disk space (330711433216 B)
[2026-02-27 20:55:21] 2026-02-27 19:54:40,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 20:55:21] 2026-02-27 19:54:40,339 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 20:55:21] 2026-02-27 19:54:40,339 | INFO     | update_server=False
[2026-02-27 20:55:21] 2026-02-27 19:54:40,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 20:55:21] 2026-02-27 19:54:40,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 20:55:21] 2026-02-27 19:54:40,339 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 20:55:21] 2026-02-27 19:54:40,761 | INFO     | all data control threads have been joined
[2026-02-27 20:55:21] 2026-02-27 19:54:40,810 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-27 20:55:21] 2026-02-27 19:54:40,810 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-27 20:55:21] 2026-02-27 19:54:40,810 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 20:55:21] 2026-02-27 19:54:40,810 | INFO     | will abort loop
[2026-02-27 20:55:21] 2026-02-27 19:54:40,920 | INFO     | all job control threads have been joined
[2026-02-27 20:55:21] 2026-02-27 19:54:41,344 | INFO     | [job] retrieve thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:41,345 | INFO     | [job] queue monitor thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:41,470 | INFO     | [data] copytool_in thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:41,703 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:41,707 | INFO     | all payload control threads have been joined
[2026-02-27 20:55:21] 2026-02-27 19:54:41,734 | INFO     | [payload] failed_post thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:41,767 | INFO     | [data] control thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:41,816 | INFO     | [job] job monitor thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:41,925 | INFO     | [job] control thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:42,260 | INFO     | [payload] validate_post thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:42,345 | INFO     | [data] copytool_out thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:42,667 | INFO     | [job] validate thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:42,713 | INFO     | [payload] control thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:42,746 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:42,811 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:42,908 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 20:55:21] 2026-02-27 19:54:46,916 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:54:50,792 | INFO     | job.realtimelogging is not enabled
[2026-02-27 20:55:21] 2026-02-27 19:54:51,798 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 20:55:21] 2026-02-27 19:55:10,257 | INFO     | 6157s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-27 20:55:21] 2026-02-27 19:55:11,317 | INFO     | PID=408067 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-27 20:55:21] 2026-02-27 19:55:11,317 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 20:55:21] 2026-02-27 19:55:11,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 20:55:21] 2026-02-27 19:55:11,317 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 20:55:21] 2026-02-27 19:55:14,912 | INFO     | [monitor] cgroup control has ended
[2026-02-27 20:55:21] 2026-02-27 19:55:16,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140706513536832)>', '<ExcThread(monitor, started 140705695504128)>']
[2026-02-27 20:55:21] 2026-02-27 19:55:16,344 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 20:55:21] 2026-02-27 19:55:16,344 | INFO     | [monitor] control thread has ended
[2026-02-27 20:55:21] 2026-02-27 19:55:21,074 | INFO     | all workflow threads have been joined
[2026-02-27 20:55:21] 2026-02-27 19:55:21,074 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 20:55:21] 2026-02-27 19:55:21,074 | INFO     | traces error code: 0
[2026-02-27 20:55:21] 2026-02-27 19:55:21,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 20:55:21] 2026-02-27 19:55:21,154 [wrapper] ==== pilot stdout END ====
[2026-02-27 20:55:21] 2026-02-27 19:55:21,158 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 20:55:21] 2026-02-27 19:55:21,162 [wrapper] pilotpid: 408067
[2026-02-27 20:55:21] 2026-02-27 19:55:21,166 [wrapper] Pilot exit status: 0
[2026-02-27 20:55:21] 2026-02-27 19:55:21,178 [wrapper] pandaids: 7019524844
[2026-02-27 20:55:21] 2026-02-27 19:55:21,200 [wrapper] cleanup supervisor_pilot  418015 408068
[2026-02-27 20:55:21] 2026-02-27 19:55:21,204 [wrapper] Test setup, not cleaning
[2026-02-27 20:55:21] 2026-02-27 19:55:21,208 [wrapper] apfmon messages muted
[2026-02-27 20:55:21] 2026-02-27 19:55:21,212 [wrapper] ==== wrapper stdout END ====
[2026-02-27 20:55:21] 2026-02-27 19:55:21,216 [wrapper] ==== wrapper stderr END ====
[2026-02-27 20:55:21]  *** Error codes and diagnostics ***
[2026-02-27 20:55:21]     "exeErrorCode": 0,
[2026-02-27 20:55:21]     "exeErrorDiag": "",
[2026-02-27 20:55:21]     "pilotErrorCode": 0,
[2026-02-27 20:55:21]     "pilotErrorDiag": "",
[2026-02-27 20:55:21]  *** Listing of results directory ***
[2026-02-27 20:55:21] total 944420
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc    584627 Feb 18 17:25 pilot3.tar.gz
[2026-02-27 20:55:21] -rwx------ 1 boinc boinc     36322 Feb 18 17:28 runpilot2-wrapper.sh
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc      5111 Feb 18 17:33 queuedata.json
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc       100 Feb 27 19:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 20:55:21] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 19:11 run_atlas
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc       105 Feb 27 19:11 job.xml
[2026-02-27 20:55:21] -rw-r--r-- 2 boinc boinc 679221076 Feb 27 19:11 EVNT.48508760._000687.pool.root.1
[2026-02-27 20:55:21] -rw-r--r-- 2 boinc boinc    597956 Feb 27 19:11 input.tar.gz
[2026-02-27 20:55:21] -rw-r--r-- 2 boinc boinc     15845 Feb 27 19:11 start_atlas.sh
[2026-02-27 20:55:21] drwxrwx--x 2 boinc boinc      4096 Feb 27 19:11 shared
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc         0 Feb 27 19:11 boinc_setup_complete
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc      6372 Feb 27 19:11 init_data.xml
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc         0 Feb 27 19:11 boinc_lockfile
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc      2552 Feb 27 19:11 pandaJob.out
[2026-02-27 20:55:21] -rw------- 1 boinc boinc    998782 Feb 27 19:12 agis_schedconf.cvmfs.json
[2026-02-27 20:55:21] -rw------- 1 boinc boinc   1513015 Feb 27 19:12 agis_ddmendpoints.agis.ALL.json
[2026-02-27 20:55:21] -rw------- 1 boinc boinc       425 Feb 27 19:12 workernode_map.json
[2026-02-27 20:55:21] drwx------ 5 boinc boinc      4096 Feb 27 19:12 pilot3
[2026-02-27 20:55:21] -rw------- 1 boinc boinc 281559298 Feb 27 20:54 HITS.48508763._035194.pool.root.1
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc       530 Feb 27 20:54 boinc_task_state.xml
[2026-02-27 20:55:21] -rw------- 1 boinc boinc      1021 Feb 27 20:54 memory_monitor_summary.json
[2026-02-27 20:55:21] -rw------- 1 boinc boinc        95 Feb 27 20:54 pilot_heartbeat.json
[2026-02-27 20:55:21] -rw------- 1 boinc boinc    302103 Feb 27 20:54 log.48508763._035194.job.log.tgz.1
[2026-02-27 20:55:21] -rw------- 1 boinc boinc      6321 Feb 27 20:54 heartbeat.json
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc      8192 Feb 27 20:55 boinc_mmap_file
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc        27 Feb 27 20:55 wrapper_checkpoint.txt
[2026-02-27 20:55:21] -rw------- 1 boinc boinc      5120 Feb 27 20:55 pilotlog.txt
[2026-02-27 20:55:21] -rw------- 1 boinc boinc    891333 Feb 27 20:55 log.48508763._035194.job.log.1
[2026-02-27 20:55:21] -rw------- 1 boinc boinc       357 Feb 27 20:55 output.list
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc       620 Feb 27 20:55 runtime_log
[2026-02-27 20:55:21] -rw------- 1 boinc boinc   1208320 Feb 27 20:55 result.tar.gz
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc      8916 Feb 27 20:55 runtime_log.err
[2026-02-27 20:55:21] -rw------- 1 boinc boinc       661 Feb 27 20:55 SpTKDmwazC9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmRcwKDmfAsfqm.diag
[2026-02-27 20:55:21] -rw-r--r-- 1 boinc boinc     12797 Feb 27 20:55 stderr.txt
[2026-02-27 20:55:21] HITS file was successfully produced:
[2026-02-27 20:55:21] -rw------- 1 boinc boinc 281559298 Feb 27 20:54 shared/HITS.pool.root.1
[2026-02-27 20:55:21]  *** Contents of shared directory: ***
[2026-02-27 20:55:21] total 940056
[2026-02-27 20:55:21] -rw-r--r-- 2 boinc boinc 679221076 Feb 27 19:11 ATLAS.root_0
[2026-02-27 20:55:21] -rw-r--r-- 2 boinc boinc    597956 Feb 27 19:11 input.tar.gz
[2026-02-27 20:55:21] -rw-r--r-- 2 boinc boinc     15845 Feb 27 19:11 start_atlas.sh
[2026-02-27 20:55:21] -rw------- 1 boinc boinc 281559298 Feb 27 20:54 HITS.pool.root.1
[2026-02-27 20:55:21] -rw------- 1 boinc boinc   1208320 Feb 27 20:55 result.tar.gz
20:55:22 (403953): run_atlas exited; CPU time 23529.748458
20:55:22 (403953): called boinc_finish(0)

</stderr_txt>
]]>

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