Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:28:42 (15221): wrapper (7.7.26015): starting
13:28:42 (15221): wrapper: running run_atlas (--nthreads 8)
[2026-02-27 13:28:42] Arguments: --nthreads 8
[2026-02-27 13:28:42] Threads: 8
[2026-02-27 13:28:42] Checking for CVMFS
[2026-02-27 13:28:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 13:28:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 13:28:46] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 13:28:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 13:28:47] 2.11.2.0 12981 105974 108600 156695 3 87 24169830 25165825 4217 130560 0 38766309 99.821 30938179 3223 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-27 13:28:47] CVMFS is ok
[2026-02-27 13:28:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 13:28:47] Checking for apptainer binary...
[2026-02-27 13:28:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 13:28:47] Running /usr/bin/apptainer --version
[2026-02-27 13:28:47] apptainer version 1.3.2-1.el7
[2026-02-27 13:28:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 13:28:59] cg-vwn366.simple-grid.lan
[2026-02-27 13:28:59] apptainer works
[2026-02-27 13:28:59] Set ATHENA_PROC_NUMBER=8
[2026-02-27 13:28:59] Set ATHENA_CORE_NUMBER=8
[2026-02-27 13:28:59] Starting ATLAS job with PandaID=7030887842
[2026-02-27 13:28:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 21:38:52]  *** The last 200 lines of the pilot log: ***
[2026-02-27 21:38:52] 2026-02-27 20:38:09,462 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-27 21:38:52] 2026-02-27 20:38:09,510 | INFO     | time since job start (29051s) is within the limit (349056.0s)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,070 | INFO     | job 7030887842 has state=finished
[2026-02-27 21:38:52] 2026-02-27 20:38:10,071 | INFO     | preparing for final server update for job 7030887842 in state='finished'
[2026-02-27 21:38:52] 2026-02-27 20:38:10,071 | INFO     | reading metadata from: /var/lib/boinc/slots/6/PanDA_Pilot-7030887842/jobReport.json
[2026-02-27 21:38:52] 2026-02-27 20:38:10,074 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/6/workernode_map.json
[2026-02-27 21:38:52] 2026-02-27 20:38:10,074 | INFO     | this job has now completed (state=finished)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,075 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,075 | INFO     | log transfer has been attempted: DONE
[2026-02-27 21:38:52] 2026-02-27 20:38:10,075 | INFO     | job 7030887842 has finished - writing final server update
[2026-02-27 21:38:52] 2026-02-27 20:38:10,075 | INFO     | total number of processed events: 400 (read)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,077 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7030887842/memory_monitor_summary.json (trf name=prmon)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,078 | INFO     | extracted standard info from prmon json
[2026-02-27 21:38:52] 2026-02-27 20:38:10,078 | INFO     | extracted standard memory fields from prmon json
[2026-02-27 21:38:52] 2026-02-27 20:38:10,078 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-27 21:38:52] 2026-02-27 20:38:10,078 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-27 21:38:52] 2026-02-27 20:38:10,079 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-27 21:38:52] 2026-02-27 20:38:10,088 | INFO     | fitting pss+swap vs Time
[2026-02-27 21:38:52] 2026-02-27 20:38:10,089 | INFO     | sum of square deviations: 32814055252.0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,095 | INFO     | sum of deviations: 137568877622.00006
[2026-02-27 21:38:52] 2026-02-27 20:38:10,096 | INFO     | mean x: 1772210282.0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,096 | INFO     | mean y: 2525113.467230444
[2026-02-27 21:38:52] 2026-02-27 20:38:10,096 | INFO     | intersect: -7427247815.6207905
[2026-02-27 21:38:52] 2026-02-27 20:38:10,097 | INFO     | chi2: 4.454268733814675
[2026-02-27 21:38:52] 2026-02-27 20:38:10,098 | INFO     | sum of square deviations: 31784398737.0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,104 | INFO     | sum of deviations: 169062317796.49994
[2026-02-27 21:38:52] 2026-02-27 20:38:10,105 | INFO     | mean x: 1772210129.5
[2026-02-27 21:38:52] 2026-02-27 20:38:10,105 | INFO     | mean y: 2529735.891025641
[2026-02-27 21:38:52] 2026-02-27 20:38:10,105 | INFO     | intersect: -9423917326.860134
[2026-02-27 21:38:52] 2026-02-27 20:38:10,106 | INFO     | chi2: 3.6415116467798545
[2026-02-27 21:38:52] 2026-02-27 20:38:10,106 | INFO     | current chi2=3.6415116467798545 (change=18.246700762905427 %)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,106 | INFO     | right removable region: 467
[2026-02-27 21:38:52] 2026-02-27 20:38:10,107 | INFO     | sum of square deviations: 31784398737.0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,113 | INFO     | sum of deviations: -7213614597.0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,113 | INFO     | mean x: 1772210434.5
[2026-02-27 21:38:52] 2026-02-27 20:38:10,114 | INFO     | mean y: 2546534.418803419
[2026-02-27 21:38:52] 2026-02-27 20:38:10,114 | INFO     | intersect: 404757794.2587794
[2026-02-27 21:38:52] 2026-02-27 20:38:10,114 | INFO     | chi2: 1.1107275515356632
[2026-02-27 21:38:52] 2026-02-27 20:38:10,115 | INFO     | current chi2=1.1107275515356632 (change=75.06375079923778 %)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,115 | INFO     | sum of square deviations: 30776510072.0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,122 | INFO     | sum of deviations: -28352978547.00007
[2026-02-27 21:38:52] 2026-02-27 20:38:10,122 | INFO     | mean x: 1772210587.0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,123 | INFO     | mean y: 2549722.2548596114
[2026-02-27 21:38:52] 2026-02-27 20:38:10,123 | INFO     | intersect: 1635205557.3845148
[2026-02-27 21:38:52] 2026-02-27 20:38:10,123 | INFO     | chi2: 1.0184492307681665
[2026-02-27 21:38:52] 2026-02-27 20:38:10,124 | INFO     | current chi2=1.0184492307681665 (change=8.307916792008537 %)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,124 | INFO     | left removable region: 20
[2026-02-27 21:38:52] 2026-02-27 20:38:10,124 | INFO     | sum of square deviations: 27694837408.0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,130 | INFO     | sum of deviations: 5187984668.999997
[2026-02-27 21:38:52] 2026-02-27 20:38:10,131 | INFO     | mean x: 1772210709.0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,131 | INFO     | mean y: 2554504.1521252794
[2026-02-27 21:38:52] 2026-02-27 20:38:10,131 | INFO     | intersect: -329428018.54987675
[2026-02-27 21:38:52] 2026-02-27 20:38:10,132 | INFO     | chi2: 0.14958804138566956
[2026-02-27 21:38:52] 2026-02-27 20:38:10,132 | INFO     | current memory leak: 0.19 B/s (using 447 data points, chi2=0.15)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,133 | INFO     | could have reported an average CPU frequency of 1999 MHz (20 samples)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,133 | INFO     | ..............................
[2026-02-27 21:38:52] 2026-02-27 20:38:10,133 | INFO     | . Timing measurements:
[2026-02-27 21:38:52] 2026-02-27 20:38:10,133 | INFO     | . get job = 0 s
[2026-02-27 21:38:52] 2026-02-27 20:38:10,134 | INFO     | . initial setup = 90 s
[2026-02-27 21:38:52] 2026-02-27 20:38:10,134 | INFO     | . payload setup = 117 s
[2026-02-27 21:38:52] 2026-02-27 20:38:10,134 | INFO     | . stage-in = 0 s
[2026-02-27 21:38:52] 2026-02-27 20:38:10,134 | INFO     | . payload execution = 28910 s
[2026-02-27 21:38:52] 2026-02-27 20:38:10,134 | INFO     | . stage-out = 1 s
[2026-02-27 21:38:52] 2026-02-27 20:38:10,134 | INFO     | . log creation = 0 s
[2026-02-27 21:38:52] 2026-02-27 20:38:10,134 | INFO     | ..............................
[2026-02-27 21:38:52] 2026-02-27 20:38:10,459 | INFO     | 
[2026-02-27 21:38:52] 2026-02-27 20:38:10,459 | INFO     | job summary report
[2026-02-27 21:38:52] 2026-02-27 20:38:10,459 | INFO     | --------------------------------------------------
[2026-02-27 21:38:52] 2026-02-27 20:38:10,459 | INFO     | PanDA job id: 7030887842
[2026-02-27 21:38:52] 2026-02-27 20:38:10,459 | INFO     | task id: 48842696
[2026-02-27 21:38:52] 2026-02-27 20:38:10,459 | INFO     | errors: (none)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,460 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-27 21:38:52] 2026-02-27 20:38:10,460 | INFO     | pilot state: finished 
[2026-02-27 21:38:52] 2026-02-27 20:38:10,460 | INFO     | transexitcode: 0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,460 | INFO     | exeerrorcode: 0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,460 | INFO     | exeerrordiag: 
[2026-02-27 21:38:52] 2026-02-27 20:38:10,460 | INFO     | exitcode: 0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,460 | INFO     | exitmsg: OK
[2026-02-27 21:38:52] 2026-02-27 20:38:10,460 | INFO     | cpuconsumptiontime: 203672 s
[2026-02-27 21:38:52] 2026-02-27 20:38:10,460 | INFO     | nevents: 400
[2026-02-27 21:38:52] 2026-02-27 20:38:10,460 | INFO     | neventsw: 0
[2026-02-27 21:38:52] 2026-02-27 20:38:10,461 | INFO     | pid: 23883
[2026-02-27 21:38:52] 2026-02-27 20:38:10,461 | INFO     | pgrp: 23883
[2026-02-27 21:38:52] 2026-02-27 20:38:10,461 | INFO     | corecount: 8
[2026-02-27 21:38:52] 2026-02-27 20:38:10,461 | INFO     | event service: False
[2026-02-27 21:38:52] 2026-02-27 20:38:10,461 | INFO     | sizes: {0: 2287388, 1: 2287789, 2: 2287849, 12: 2287877, 29031: 2325597, 29034: 2329170, 29037: 2329354, 29039: 2329548}
[2026-02-27 21:38:52] 2026-02-27 20:38:10,461 | INFO     | --------------------------------------------------
[2026-02-27 21:38:52] 2026-02-27 20:38:10,461 | INFO     | 
[2026-02-27 21:38:52] 2026-02-27 20:38:10,461 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-02-27 21:38:52] 2026-02-27 20:38:10,491 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,491 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,491 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,491 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,491 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,491 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,492 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,492 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,492 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,492 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,492 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,492 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,492 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,492 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,492 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,492 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,493 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,493 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,493 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,493 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 21:38:52] 2026-02-27 20:38:10,493 | INFO     | job 7030887842 has completed (purged errors)
[2026-02-27 21:38:52] 2026-02-27 20:38:10,493 | INFO     | overall cleanup function is called
[2026-02-27 21:38:52] 2026-02-27 20:38:11,501 | INFO     | --- collectZombieJob: --- 10, [23883]
[2026-02-27 21:38:52] 2026-02-27 20:38:11,502 | INFO     | zombie collector waiting for pid 23883
[2026-02-27 21:38:52] 2026-02-27 20:38:11,502 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 21:38:52] 2026-02-27 20:38:11,502 | INFO     | collected zombie processes
[2026-02-27 21:38:52] 2026-02-27 20:38:11,502 | INFO     | will attempt to kill all subprocesses of pid=23883
[2026-02-27 21:38:52] 2026-02-27 20:38:11,563 | INFO     | process IDs to be killed: [23883] (in reverse order)
[2026-02-27 21:38:52] 2026-02-27 20:38:11,612 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 21:38:52] 2026-02-27 20:38:11,613 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 21:38:52] 2026-02-27 20:38:11,615 | INFO     | did not find any defunct processes belonging to 23883
[2026-02-27 21:38:52] 2026-02-27 20:38:11,616 | INFO     | did not find any defunct processes belonging to 23883
[2026-02-27 21:38:52] 2026-02-27 20:38:11,617 | INFO     | ready for new job
[2026-02-27 21:38:52] 2026-02-27 20:38:11,617 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 21:38:52] 2026-02-27 20:38:11,620 | INFO     | **************************************
[2026-02-27 21:38:52] 2026-02-27 20:38:11,620 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 21:38:52] 2026-02-27 20:38:11,620 | INFO     | **************************************
[2026-02-27 21:38:52] 2026-02-27 20:38:11,620 | INFO     | 
[2026-02-27 21:38:52] 2026-02-27 20:38:11,621 | INFO     | pilot is running in a VM
[2026-02-27 21:38:52] 2026-02-27 20:38:11,621 | INFO     | architecture information:
[2026-02-27 21:38:52] 2026-02-27 20:38:11,621 | INFO     | executing command: cat /etc/os-release
[2026-02-27 21:38:52] 2026-02-27 20:38:11,641 | INFO     | cat /etc/os-release:
[2026-02-27 21:38:52] NAME="CentOS Linux"
[2026-02-27 21:38:52] VERSION="7 (Core)"
[2026-02-27 21:38:52] ID="centos"
[2026-02-27 21:38:52] ID_LIKE="rhel fedora"
[2026-02-27 21:38:52] VERSION_ID="7"
[2026-02-27 21:38:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 21:38:52] ANSI_COLOR="0;31"
[2026-02-27 21:38:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 21:38:52] HOME_URL="https://www.centos.org/"
[2026-02-27 21:38:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 21:38:52] 
[2026-02-27 21:38:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 21:38:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 21:38:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 21:38:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 21:38:52] 
[2026-02-27 21:38:52] 2026-02-27 20:38:11,641 | INFO     | **************************************
[2026-02-27 21:38:52] 2026-02-27 20:38:12,145 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-02-27 21:38:52] 2026-02-27 20:38:12,164 | INFO     | sufficient remaining disk space (497550360576 B)
[2026-02-27 21:38:52] 2026-02-27 20:38:12,164 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 21:38:52] 2026-02-27 20:38:12,164 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 21:38:52] 2026-02-27 20:38:12,165 | INFO     | update_server=False
[2026-02-27 21:38:52] 2026-02-27 20:38:12,165 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 21:38:52] 2026-02-27 20:38:12,165 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 21:38:52] 2026-02-27 20:38:12,219 | INFO     | all data control threads have been joined
[2026-02-27 21:38:52] 2026-02-27 20:38:12,538 | INFO     | all payload control threads have been joined
[2026-02-27 21:38:52] 2026-02-27 20:38:12,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 21:38:52] 2026-02-27 20:38:12,967 | INFO     | aborting loop
[2026-02-27 21:38:52] 2026-02-27 20:38:13,170 | INFO     | [job] retrieve thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:13,171 | INFO     | [job] queue monitor thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:13,222 | INFO     | [data] control thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:13,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 21:38:52] 2026-02-27 20:38:13,448 | INFO     | [job] validate thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:13,543 | INFO     | [payload] control thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:13,636 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:13,687 | INFO     | all job control threads have been joined
[2026-02-27 21:38:52] 2026-02-27 20:38:13,776 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:13,972 | INFO     | [job] job monitor thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:14,112 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:14,267 | INFO     | [payload] failed_post thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:14,362 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:14,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 21:38:52] 2026-02-27 20:38:14,628 | INFO     | [data] copytool_in thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:14,629 | INFO     | [payload] validate_post thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:14,693 | INFO     | [job] control thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:15,431 | INFO     | [data] copytool_out thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:18,454 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 21:38:52] 2026-02-27 20:38:42,681 | INFO     | PID=19358 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-27 21:38:52] 2026-02-27 20:38:42,681 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 21:38:52] 2026-02-27 20:38:42,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 21:38:52] 2026-02-27 20:38:42,682 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 21:38:52] 2026-02-27 20:38:47,399 | INFO     | [monitor] cgroup control has ended
[2026-02-27 21:38:52] 2026-02-27 20:38:47,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862466520896)>', '<ExcThread(monitor, started 139862002865920)>']
[2026-02-27 21:38:52] 2026-02-27 20:38:47,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 21:38:52] 2026-02-27 20:38:47,708 | INFO     | [monitor] control thread has ended
[2026-02-27 21:38:52] 2026-02-27 20:38:52,421 | INFO     | all workflow threads have been joined
[2026-02-27 21:38:52] 2026-02-27 20:38:52,422 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 21:38:52] 2026-02-27 20:38:52,422 | INFO     | traces error code: 0
[2026-02-27 21:38:52] 2026-02-27 20:38:52,422 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 21:38:52] 2026-02-27 20:38:52,559 [wrapper] ==== pilot stdout END ====
[2026-02-27 21:38:52] 2026-02-27 20:38:52,565 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 21:38:52] 2026-02-27 20:38:52,570 [wrapper] pilotpid: 19358
[2026-02-27 21:38:52] 2026-02-27 20:38:52,576 [wrapper] Pilot exit status: 0
[2026-02-27 21:38:52] 2026-02-27 20:38:52,591 [wrapper] pandaids: 7030887842
[2026-02-27 21:38:52] 2026-02-27 20:38:52,619 [wrapper] cleanup supervisor_pilot 32653 19359
[2026-02-27 21:38:52] 2026-02-27 20:38:52,623 [wrapper] Test setup, not cleaning
[2026-02-27 21:38:52] 2026-02-27 20:38:52,634 [wrapper] apfmon messages muted
[2026-02-27 21:38:52] 2026-02-27 20:38:52,638 [wrapper] ==== wrapper stdout END ====
[2026-02-27 21:38:52] 2026-02-27 20:38:52,641 [wrapper] ==== wrapper stderr END ====
[2026-02-27 21:38:52]  *** Error codes and diagnostics ***
[2026-02-27 21:38:52]     "exeErrorCode": 0,
[2026-02-27 21:38:52]     "exeErrorDiag": "",
[2026-02-27 21:38:52]     "pilotErrorCode": 0,
[2026-02-27 21:38:52]     "pilotErrorDiag": "",
[2026-02-27 21:38:52]  *** Listing of results directory ***
[2026-02-27 21:38:52] total 618032
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc    584627 Feb 26 20:44 pilot3.tar.gz
[2026-02-27 21:38:52] -rwx------. 1 boinc boinc     36322 Feb 26 20:47 runpilot2-wrapper.sh
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc      5111 Feb 26 20:50 queuedata.json
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc       100 Feb 27 13:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 21:38:52] -rwxr-xr-x. 1 boinc boinc      7986 Feb 27 13:28 run_atlas
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc       105 Feb 27 13:28 job.xml
[2026-02-27 21:38:52] -rw-r--r--. 2 boinc boinc 276924052 Feb 27 13:28 EVNT.48449015._000002.pool.root.1
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc      6390 Feb 27 13:28 init_data.xml
[2026-02-27 21:38:52] -rw-r--r--. 2 boinc boinc     15845 Feb 27 13:28 start_atlas.sh
[2026-02-27 21:38:52] drwxrwx--x. 2 boinc boinc        68 Feb 27 13:28 shared
[2026-02-27 21:38:52] -rw-r--r--. 2 boinc boinc    597992 Feb 27 13:28 input.tar.gz
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc         0 Feb 27 13:28 boinc_lockfile
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc      2672 Feb 27 13:28 pandaJob.out
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc       415 Feb 27 13:33 workernode_map.json
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc    998473 Feb 27 13:33 agis_schedconf.cvmfs.json
[2026-02-27 21:38:52] drwx------. 5 boinc boinc      4096 Feb 27 13:33 pilot3
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc 342733616 Feb 27 21:37 HITS.48842696._000032.pool.root.1
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc       532 Feb 27 21:37 boinc_task_state.xml
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc        95 Feb 27 21:37 pilot_heartbeat.json
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc      1018 Feb 27 21:37 memory_monitor_summary.json
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc   1513015 Feb 27 21:38 agis_ddmendpoints.agis.ALL.json
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc    655840 Feb 27 21:38 log.48842696._000032.job.log.tgz.1
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc      6315 Feb 27 21:38 heartbeat.json
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc      8192 Feb 27 21:38 boinc_mmap_file
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc        29 Feb 27 21:38 wrapper_checkpoint.txt
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc      4805 Feb 27 21:38 pilotlog.txt
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc   3988194 Feb 27 21:38 log.48842696._000032.job.log.1
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc       357 Feb 27 21:38 output.list
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc       620 Feb 27 21:38 runtime_log
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc   4659200 Feb 27 21:38 result.tar.gz
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc      8816 Feb 27 21:38 runtime_log.err
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc       658 Feb 27 21:38 MB1MDmAWwF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmvp1KDmoebcEn.diag
[2026-02-27 21:38:52] -rw-r--r--. 1 boinc boinc     20973 Feb 27 21:38 stderr.txt
[2026-02-27 21:38:52] HITS file was successfully produced:
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc 342733616 Feb 27 21:37 shared/HITS.pool.root.1
[2026-02-27 21:38:52]  *** Contents of shared directory: ***
[2026-02-27 21:38:52] total 610292
[2026-02-27 21:38:52] -rw-r--r--. 2 boinc boinc 276924052 Feb 27 13:28 ATLAS.root_0
[2026-02-27 21:38:52] -rw-r--r--. 2 boinc boinc     15845 Feb 27 13:28 start_atlas.sh
[2026-02-27 21:38:52] -rw-r--r--. 2 boinc boinc    597992 Feb 27 13:28 input.tar.gz
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc 342733616 Feb 27 21:37 HITS.pool.root.1
[2026-02-27 21:38:52] -rw-------. 1 boinc boinc   4659200 Feb 27 21:38 result.tar.gz
21:38:54 (15221): run_atlas exited; CPU time 203937.802352
21:38:54 (15221): called boinc_finish(0)

</stderr_txt>
]]>

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