Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:44:57 (344651): wrapper (7.7.26015): starting
09:44:57 (344651): wrapper: running run_atlas (--nthreads 3)
[2026-02-27 09:44:57] Arguments: --nthreads 3
[2026-02-27 09:44:57] Threads: 3
[2026-02-27 09:44:57] Checking for CVMFS
[2026-02-27 09:44:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 09:45:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 09:45:00] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 09:45:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 09:45:00] 2.9.2.0 45133 2353 64640 156688 0 50 24102566 36864000 0 130560 0 848448 99.976 97052 18201 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 09:45:00] CVMFS is ok
[2026-02-27 09:45:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 09:45:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 09:45:00] Further information can be found at the LHC@home message board.
[2026-02-27 09:45:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 09:45:00] Checking for apptainer binary...
[2026-02-27 09:45:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 09:45:00] Running /usr/bin/apptainer --version
[2026-02-27 09:45:00] apptainer version 1.4.1-1.1
[2026-02-27 09:45:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 09:45:01] cosA133
[2026-02-27 09:45:01] apptainer works
[2026-02-27 09:45:01] Set ATHENA_PROC_NUMBER=3
[2026-02-27 09:45:01] Set ATHENA_CORE_NUMBER=3
[2026-02-27 09:45:01] Starting ATLAS job with PandaID=7019644250
[2026-02-27 09:45:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 12:03:35]  *** The last 200 lines of the pilot log: ***
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 12:03:35] 2026-02-27 11:02:54,538 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 12:03:35] 2026-02-27 11:02:54,539 | INFO     | job 7019644250 has completed (purged errors)
[2026-02-27 12:03:35] 2026-02-27 11:02:54,539 | INFO     | overall cleanup function is called
[2026-02-27 12:03:35] 2026-02-27 11:02:55,545 | INFO     | --- collectZombieJob: --- 10, [353125]
[2026-02-27 12:03:35] 2026-02-27 11:02:55,545 | INFO     | zombie collector waiting for pid 353125
[2026-02-27 12:03:35] 2026-02-27 11:02:55,546 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 12:03:35] 2026-02-27 11:02:55,546 | INFO     | collected zombie processes
[2026-02-27 12:03:35] 2026-02-27 11:02:55,546 | INFO     | will attempt to kill all subprocesses of pid=353125
[2026-02-27 12:03:35] 2026-02-27 11:02:55,582 | INFO     | process IDs to be killed: [353125] (in reverse order)
[2026-02-27 12:03:35] 2026-02-27 11:02:55,609 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 12:03:35] 2026-02-27 11:02:55,609 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 12:03:35] 2026-02-27 11:02:55,610 | INFO     | did not find any defunct processes belonging to 353125
[2026-02-27 12:03:35] 2026-02-27 11:02:55,611 | INFO     | did not find any defunct processes belonging to 353125
[2026-02-27 12:03:35] 2026-02-27 11:02:55,611 | INFO     | ready for new job
[2026-02-27 12:03:35] 2026-02-27 11:02:55,611 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 12:03:35] 2026-02-27 11:02:55,611 | INFO     | **************************************
[2026-02-27 12:03:35] 2026-02-27 11:02:55,611 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 12:03:35] 2026-02-27 11:02:55,611 | INFO     | **************************************
[2026-02-27 12:03:35] 2026-02-27 11:02:55,612 | INFO     | 
[2026-02-27 12:03:35] 2026-02-27 11:02:55,612 | INFO     | architecture information:
[2026-02-27 12:03:35] 2026-02-27 11:02:55,612 | INFO     | executing command: cat /etc/os-release
[2026-02-27 12:03:35] 2026-02-27 11:02:55,622 | INFO     | cat /etc/os-release:
[2026-02-27 12:03:35] NAME="CentOS Linux"
[2026-02-27 12:03:35] VERSION="7 (Core)"
[2026-02-27 12:03:35] ID="centos"
[2026-02-27 12:03:35] ID_LIKE="rhel fedora"
[2026-02-27 12:03:35] VERSION_ID="7"
[2026-02-27 12:03:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 12:03:35] ANSI_COLOR="0;31"
[2026-02-27 12:03:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 12:03:35] HOME_URL="https://www.centos.org/"
[2026-02-27 12:03:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 12:03:35] 
[2026-02-27 12:03:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 12:03:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 12:03:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 12:03:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 12:03:35] 
[2026-02-27 12:03:35] 2026-02-27 11:02:55,622 | INFO     | **************************************
[2026-02-27 12:03:35] 2026-02-27 11:02:56,126 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-27 12:03:35] 2026-02-27 11:02:56,139 | INFO     | sufficient remaining disk space (636449980416 B)
[2026-02-27 12:03:35] 2026-02-27 11:02:56,139 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 12:03:35] 2026-02-27 11:02:56,139 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 12:03:35] 2026-02-27 11:02:56,140 | INFO     | update_server=False
[2026-02-27 12:03:35] 2026-02-27 11:02:56,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 12:03:35] 2026-02-27 11:02:56,140 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 12:03:35] 2026-02-27 11:02:56,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 12:03:35] 2026-02-27 11:02:56,274 | INFO     | all data control threads have been joined
[2026-02-27 12:03:35] 2026-02-27 11:02:56,345 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-27 12:03:35] 2026-02-27 11:02:56,345 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-27 12:03:35] 2026-02-27 11:02:56,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 12:03:35] 2026-02-27 11:02:56,345 | INFO     | will abort loop
[2026-02-27 12:03:35] 2026-02-27 11:02:56,556 | INFO     | all payload control threads have been joined
[2026-02-27 12:03:35] 2026-02-27 11:02:57,145 | INFO     | [job] retrieve thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:57,146 | INFO     | [job] queue monitor thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:57,261 | INFO     | all job control threads have been joined
[2026-02-27 12:03:35] 2026-02-27 11:02:57,280 | INFO     | [data] control thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:57,351 | INFO     | [job] job monitor thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:57,562 | INFO     | [payload] control thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:57,592 | INFO     | [payload] validate_post thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:57,733 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:57,873 | INFO     | [job] validate thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:57,980 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:58,117 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:58,145 | INFO     | [data] copytool_out thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:58,151 | INFO     | [data] copytool_in thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:58,267 | INFO     | [job] control thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:58,652 | INFO     | [payload] failed_post thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:02:59,088 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 12:03:35] 2026-02-27 11:03:03,095 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:03:06,699 | INFO     | job.realtimelogging is not enabled
[2026-02-27 12:03:35] 2026-02-27 11:03:07,704 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 12:03:35] 2026-02-27 11:03:26,918 | INFO     | PID=348698 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-27 12:03:35] 2026-02-27 11:03:26,918 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 12:03:35] 2026-02-27 11:03:26,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 12:03:35] 2026-02-27 11:03:26,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 12:03:35] 2026-02-27 11:03:29,112 | INFO     | [monitor] cgroup control has ended
[2026-02-27 12:03:35] 2026-02-27 11:03:30,373 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140486839891776)>', '<ExcThread(monitor, started 140486341805824)>']
[2026-02-27 12:03:35] 2026-02-27 11:03:30,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 12:03:35] 2026-02-27 11:03:30,940 | INFO     | [monitor] control thread has ended
[2026-02-27 12:03:35] 2026-02-27 11:03:35,399 | INFO     | all workflow threads have been joined
[2026-02-27 12:03:35] 2026-02-27 11:03:35,399 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 12:03:35] 2026-02-27 11:03:35,400 | INFO     | traces error code: 0
[2026-02-27 12:03:35] 2026-02-27 11:03:35,400 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 12:03:35] 2026-02-27 11:03:35,447 [wrapper] ==== pilot stdout END ====
[2026-02-27 12:03:35] 2026-02-27 11:03:35,450 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 12:03:35] 2026-02-27 11:03:35,453 [wrapper] pilotpid: 348698
[2026-02-27 12:03:35] 2026-02-27 11:03:35,456 [wrapper] Pilot exit status: 0
[2026-02-27 12:03:35] 2026-02-27 11:03:35,465 [wrapper] pandaids: 7019644250
[2026-02-27 12:03:35] 2026-02-27 11:03:35,482 [wrapper] cleanup supervisor_pilot  359263 348699
[2026-02-27 12:03:35] 2026-02-27 11:03:35,485 [wrapper] Test setup, not cleaning
[2026-02-27 12:03:35] 2026-02-27 11:03:35,487 [wrapper] apfmon messages muted
[2026-02-27 12:03:35] 2026-02-27 11:03:35,490 [wrapper] ==== wrapper stdout END ====
[2026-02-27 12:03:35] 2026-02-27 11:03:35,492 [wrapper] ==== wrapper stderr END ====
[2026-02-27 12:03:35]  *** Error codes and diagnostics ***
[2026-02-27 12:03:35]     "exeErrorCode": 0,
[2026-02-27 12:03:35]     "exeErrorDiag": "",
[2026-02-27 12:03:35]     "pilotErrorCode": 0,
[2026-02-27 12:03:35]     "pilotErrorDiag": "",
[2026-02-27 12:03:35]  *** Listing of results directory ***
[2026-02-27 12:03:35] total 951280
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc    584627 Feb 18 17:25 pilot3.tar.gz
[2026-02-27 12:03:35] -rwx------ 1 boinc boinc     36322 Feb 18 17:26 runpilot2-wrapper.sh
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc      5111 Feb 18 17:28 queuedata.json
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc       100 Feb 27 09:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 12:03:35] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 09:44 run_atlas
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc       105 Feb 27 09:44 job.xml
[2026-02-27 12:03:35] -rw-r--r-- 2 boinc boinc 680626804 Feb 27 09:44 EVNT.48508760._000695.pool.root.1
[2026-02-27 12:03:35] -rw-r--r-- 2 boinc boinc    597953 Feb 27 09:44 input.tar.gz
[2026-02-27 12:03:35] -rw-r--r-- 2 boinc boinc     15845 Feb 27 09:44 start_atlas.sh
[2026-02-27 12:03:35] drwxrwx--x 2 boinc boinc      4096 Feb 27 09:44 shared
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc         0 Feb 27 09:44 boinc_setup_complete
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc      6197 Feb 27 09:44 init_data.xml
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc         0 Feb 27 09:44 boinc_lockfile
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc      2553 Feb 27 09:45 pandaJob.out
[2026-02-27 12:03:35] -rw------- 1 boinc boinc    998489 Feb 27 09:45 agis_schedconf.cvmfs.json
[2026-02-27 12:03:35] -rw------- 1 boinc boinc   1513015 Feb 27 09:45 agis_ddmendpoints.agis.ALL.json
[2026-02-27 12:03:35] -rw------- 1 boinc boinc       428 Feb 27 09:45 workernode_map.json
[2026-02-27 12:03:35] drwx------ 5 boinc boinc      4096 Feb 27 09:45 pilot3
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc       530 Feb 27 12:02 boinc_task_state.xml
[2026-02-27 12:03:35] -rw------- 1 boinc boinc 286545103 Feb 27 12:02 HITS.48508763._035678.pool.root.1
[2026-02-27 12:03:35] -rw------- 1 boinc boinc      1016 Feb 27 12:02 memory_monitor_summary.json
[2026-02-27 12:03:35] -rw------- 1 boinc boinc    334718 Feb 27 12:02 log.48508763._035678.job.log.tgz.1
[2026-02-27 12:03:35] -rw------- 1 boinc boinc        95 Feb 27 12:02 pilot_heartbeat.json
[2026-02-27 12:03:35] -rw------- 1 boinc boinc      6311 Feb 27 12:02 heartbeat.json
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc      8192 Feb 27 12:03 boinc_mmap_file
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc        27 Feb 27 12:03 wrapper_checkpoint.txt
[2026-02-27 12:03:35] -rw------- 1 boinc boinc      5005 Feb 27 12:03 pilotlog.txt
[2026-02-27 12:03:35] -rw------- 1 boinc boinc   1178396 Feb 27 12:03 log.48508763._035678.job.log.1
[2026-02-27 12:03:35] -rw------- 1 boinc boinc       357 Feb 27 12:03 output.list
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc       620 Feb 27 12:03 runtime_log
[2026-02-27 12:03:35] -rw------- 1 boinc boinc   1525760 Feb 27 12:03 result.tar.gz
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc      8901 Feb 27 12:03 runtime_log.err
[2026-02-27 12:03:35] -rw------- 1 boinc boinc       658 Feb 27 12:03 b4gLDmDZzC9n9Rq4apOajLDm4fhM0noT9bVooX4SDmi8uKDmwsDrnn.diag
[2026-02-27 12:03:35] -rw-r--r-- 1 boinc boinc     12242 Feb 27 12:03 stderr.txt
[2026-02-27 12:03:35] HITS file was successfully produced:
[2026-02-27 12:03:35] -rw------- 1 boinc boinc 286545103 Feb 27 12:02 shared/HITS.pool.root.1
[2026-02-27 12:03:35]  *** Contents of shared directory: ***
[2026-02-27 12:03:35] total 946608
[2026-02-27 12:03:35] -rw-r--r-- 2 boinc boinc 680626804 Feb 27 09:44 ATLAS.root_0
[2026-02-27 12:03:35] -rw-r--r-- 2 boinc boinc    597953 Feb 27 09:44 input.tar.gz
[2026-02-27 12:03:35] -rw-r--r-- 2 boinc boinc     15845 Feb 27 09:44 start_atlas.sh
[2026-02-27 12:03:35] -rw------- 1 boinc boinc 286545103 Feb 27 12:02 HITS.pool.root.1
[2026-02-27 12:03:35] -rw------- 1 boinc boinc   1525760 Feb 27 12:03 result.tar.gz
12:03:37 (344651): run_atlas exited; CPU time 23938.566284
12:03:37 (344651): called boinc_finish(0)

</stderr_txt>
]]>

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