Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:43:33 (591624): wrapper (7.7.26015): starting
16:43:33 (591624): wrapper: running run_atlas (--nthreads 4)
[2026-02-27 16:43:33] Arguments: --nthreads 4
[2026-02-27 16:43:33] Threads: 4
[2026-02-27 16:43:33] Checking for CVMFS
[2026-02-27 16:43:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 16:43:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 16:43:35] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 16:43:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 16:43:35] 2.9.2.0 49711 2997 91876 156700 2 50 23827330 36864001 0 130560 0 1515010 99.982 123645 13095 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 16:43:35] CVMFS is ok
[2026-02-27 16:43:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 16:43:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 16:43:35] Further information can be found at the LHC@home message board.
[2026-02-27 16:43:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 16:43:35] Checking for apptainer binary...
[2026-02-27 16:43:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 16:43:35] Running /usr/bin/apptainer --version
[2026-02-27 16:43:35] apptainer version 1.4.1-1.1
[2026-02-27 16:43:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 16:43:35] thA317a
[2026-02-27 16:43:35] apptainer works
[2026-02-27 16:43:35] Set ATHENA_PROC_NUMBER=4
[2026-02-27 16:43:35] Set ATHENA_CORE_NUMBER=4
[2026-02-27 16:43:36] Starting ATLAS job with PandaID=7019524676
[2026-02-27 16:43:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 18:20:11]  *** The last 200 lines of the pilot log: ***
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | job 7019524676 has completed (purged errors)
[2026-02-27 18:20:11] 2026-02-27 17:19:39,860 | INFO     | overall cleanup function is called
[2026-02-27 18:20:11] 2026-02-27 17:19:40,867 | INFO     | --- collectZombieJob: --- 10, [600229]
[2026-02-27 18:20:11] 2026-02-27 17:19:40,867 | INFO     | zombie collector waiting for pid 600229
[2026-02-27 18:20:11] 2026-02-27 17:19:40,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 18:20:11] 2026-02-27 17:19:40,867 | INFO     | collected zombie processes
[2026-02-27 18:20:11] 2026-02-27 17:19:40,867 | INFO     | will attempt to kill all subprocesses of pid=600229
[2026-02-27 18:20:11] 2026-02-27 17:19:40,926 | INFO     | process IDs to be killed: [600229] (in reverse order)
[2026-02-27 18:20:11] 2026-02-27 17:19:40,958 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 18:20:11] 2026-02-27 17:19:40,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 18:20:11] 2026-02-27 17:19:40,960 | INFO     | did not find any defunct processes belonging to 600229
[2026-02-27 18:20:11] 2026-02-27 17:19:40,962 | INFO     | did not find any defunct processes belonging to 600229
[2026-02-27 18:20:11] 2026-02-27 17:19:40,962 | INFO     | ready for new job
[2026-02-27 18:20:11] 2026-02-27 17:19:40,962 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 18:20:11] 2026-02-27 17:19:40,963 | INFO     | **************************************
[2026-02-27 18:20:11] 2026-02-27 17:19:40,963 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 18:20:11] 2026-02-27 17:19:40,963 | INFO     | **************************************
[2026-02-27 18:20:11] 2026-02-27 17:19:40,963 | INFO     | 
[2026-02-27 18:20:11] 2026-02-27 17:19:40,963 | INFO     | architecture information:
[2026-02-27 18:20:11] 2026-02-27 17:19:40,963 | INFO     | executing command: cat /etc/os-release
[2026-02-27 18:20:11] 2026-02-27 17:19:40,974 | INFO     | cat /etc/os-release:
[2026-02-27 18:20:11] NAME="CentOS Linux"
[2026-02-27 18:20:11] VERSION="7 (Core)"
[2026-02-27 18:20:11] ID="centos"
[2026-02-27 18:20:11] ID_LIKE="rhel fedora"
[2026-02-27 18:20:11] VERSION_ID="7"
[2026-02-27 18:20:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 18:20:11] ANSI_COLOR="0;31"
[2026-02-27 18:20:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 18:20:11] HOME_URL="https://www.centos.org/"
[2026-02-27 18:20:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 18:20:11] 
[2026-02-27 18:20:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 18:20:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 18:20:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 18:20:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 18:20:11] 
[2026-02-27 18:20:11] 2026-02-27 17:19:40,975 | INFO     | **************************************
[2026-02-27 18:20:11] 2026-02-27 17:19:41,478 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-27 18:20:11] 2026-02-27 17:19:41,491 | INFO     | sufficient remaining disk space (233576595456 B)
[2026-02-27 18:20:11] 2026-02-27 17:19:41,491 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 18:20:11] 2026-02-27 17:19:41,491 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 18:20:11] 2026-02-27 17:19:41,491 | INFO     | update_server=False
[2026-02-27 18:20:11] 2026-02-27 17:19:41,491 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 18:20:11] 2026-02-27 17:19:41,491 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 18:20:11] 2026-02-27 17:19:41,491 | INFO     | aborting loop
[2026-02-27 18:20:11] 2026-02-27 17:19:41,491 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 18:20:11] 2026-02-27 17:19:41,596 | INFO     | all job control threads have been joined
[2026-02-27 18:20:11] 2026-02-27 17:19:41,714 | INFO     | job.realtimelogging is not enabled
[2026-02-27 18:20:11] 2026-02-27 17:19:41,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 18:20:11] 2026-02-27 17:19:42,262 | INFO     | all data control threads have been joined
[2026-02-27 18:20:11] 2026-02-27 17:19:42,496 | INFO     | [job] job monitor thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:42,496 | INFO     | [job] retrieve thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:42,497 | INFO     | [job] queue monitor thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:42,598 | INFO     | all payload control threads have been joined
[2026-02-27 18:20:11] 2026-02-27 17:19:42,598 | INFO     | [data] copytool_in thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:42,602 | INFO     | [job] control thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:42,719 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:43,080 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:43,268 | INFO     | [data] control thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:43,409 | INFO     | [payload] validate_post thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:43,602 | INFO     | [payload] control thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:43,697 | INFO     | [payload] failed_post thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:43,810 | INFO     | [job] validate thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:43,892 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:43,941 | INFO     | [data] copytool_out thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:43,966 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:44,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 18:20:11] 2026-02-27 17:19:48,968 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 18:20:11] 2026-02-27 17:19:51,784 | INFO     | [monitor] cgroup control has ended
[2026-02-27 18:20:11] 2026-02-27 17:19:52,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635432474432)>', '<ExcThread(monitor, started 139634772252416)>']
[2026-02-27 18:20:11] 2026-02-27 17:19:57,217 | INFO     | all workflow threads have been joined
[2026-02-27 18:20:11] 2026-02-27 17:19:57,217 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 18:20:11] 2026-02-27 17:19:57,217 | INFO     | traces error code: 0
[2026-02-27 18:20:11] 2026-02-27 17:19:57,217 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 18:20:11] 2026-02-27 17:20:11,199 | INFO     | PID=595732 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-27 18:20:11] 2026-02-27 17:20:11,199 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 18:20:11] 2026-02-27 17:20:11,199 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 18:20:11] 2026-02-27 17:20:11,199 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 18:20:11] 2026-02-27 17:20:11,199 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 18:20:11] 2026-02-27 17:20:11,199 | INFO     | [monitor] control thread has ended
[2026-02-27 18:20:11] 2026-02-27 17:20:11,246 [wrapper] ==== pilot stdout END ====
[2026-02-27 18:20:11] 2026-02-27 17:20:11,249 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 18:20:11] 2026-02-27 17:20:11,252 [wrapper] pilotpid: 595732
[2026-02-27 18:20:11] 2026-02-27 17:20:11,254 [wrapper] Pilot exit status: 0
[2026-02-27 18:20:11] 2026-02-27 17:20:11,262 [wrapper] pandaids: 7019524676
[2026-02-27 18:20:11] 2026-02-27 17:20:11,283 [wrapper] cleanup supervisor_pilot  605608 595733
[2026-02-27 18:20:11] 2026-02-27 17:20:11,285 [wrapper] Test setup, not cleaning
[2026-02-27 18:20:11] 2026-02-27 17:20:11,288 [wrapper] apfmon messages muted
[2026-02-27 18:20:11] 2026-02-27 17:20:11,290 [wrapper] ==== wrapper stdout END ====
[2026-02-27 18:20:11] 2026-02-27 17:20:11,293 [wrapper] ==== wrapper stderr END ====
[2026-02-27 18:20:11]  *** Error codes and diagnostics ***
[2026-02-27 18:20:11]     "exeErrorCode": 0,
[2026-02-27 18:20:11]     "exeErrorDiag": "",
[2026-02-27 18:20:11]     "pilotErrorCode": 0,
[2026-02-27 18:20:11]     "pilotErrorDiag": "",
[2026-02-27 18:20:11]  *** Listing of results directory ***
[2026-02-27 18:20:11] total 952976
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc    584627 Feb 18 17:25 pilot3.tar.gz
[2026-02-27 18:20:11] -rwx------ 1 boinc boinc     36322 Feb 18 17:26 runpilot2-wrapper.sh
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc      5111 Feb 18 17:28 queuedata.json
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc       100 Feb 27 16:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 18:20:11] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 16:43 run_atlas
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc       105 Feb 27 16:43 job.xml
[2026-02-27 18:20:11] -rw-r--r-- 2 boinc boinc 680979734 Feb 27 16:43 EVNT.48508760._000684.pool.root.1
[2026-02-27 18:20:11] -rw-r--r-- 2 boinc boinc    597950 Feb 27 16:43 input.tar.gz
[2026-02-27 18:20:11] -rw-r--r-- 2 boinc boinc     15845 Feb 27 16:43 start_atlas.sh
[2026-02-27 18:20:11] drwxrwx--x 2 boinc boinc      4096 Feb 27 16:43 shared
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc         0 Feb 27 16:43 boinc_setup_complete
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc      6439 Feb 27 16:43 init_data.xml
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc         0 Feb 27 16:43 boinc_lockfile
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc      2552 Feb 27 16:43 pandaJob.out
[2026-02-27 18:20:11] -rw------- 1 boinc boinc    998472 Feb 27 16:43 agis_schedconf.cvmfs.json
[2026-02-27 18:20:11] -rw------- 1 boinc boinc   1516111 Feb 27 16:43 agis_ddmendpoints.agis.ALL.json
[2026-02-27 18:20:11] -rw------- 1 boinc boinc       424 Feb 27 16:43 workernode_map.json
[2026-02-27 18:20:11] drwx------ 5 boinc boinc      4096 Feb 27 16:43 pilot3
[2026-02-27 18:20:11] -rw------- 1 boinc boinc 288734141 Feb 27 18:19 HITS.48508763._035026.pool.root.1
[2026-02-27 18:20:11] -rw------- 1 boinc boinc        95 Feb 27 18:19 pilot_heartbeat.json
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc       530 Feb 27 18:19 boinc_task_state.xml
[2026-02-27 18:20:11] -rw------- 1 boinc boinc      1019 Feb 27 18:19 memory_monitor_summary.json
[2026-02-27 18:20:11] -rw------- 1 boinc boinc    272920 Feb 27 18:19 log.48508763._035026.job.log.tgz.1
[2026-02-27 18:20:11] -rw------- 1 boinc boinc      6316 Feb 27 18:19 heartbeat.json
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc      8192 Feb 27 18:20 boinc_mmap_file
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc        27 Feb 27 18:20 wrapper_checkpoint.txt
[2026-02-27 18:20:11] -rw------- 1 boinc boinc       746 Feb 27 18:20 pilotlog.txt
[2026-02-27 18:20:11] -rw------- 1 boinc boinc    833927 Feb 27 18:20 log.48508763._035026.job.log.1
[2026-02-27 18:20:11] -rw------- 1 boinc boinc       357 Feb 27 18:20 output.list
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc       620 Feb 27 18:20 runtime_log
[2026-02-27 18:20:11] -rw------- 1 boinc boinc   1126400 Feb 27 18:20 result.tar.gz
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc      8901 Feb 27 18:20 runtime_log.err
[2026-02-27 18:20:11] -rw------- 1 boinc boinc       658 Feb 27 18:20 OLILDmkYzC9n9Rq4apOajLDm4fhM0noT9bVooX4SDmr5uKDm6UFPkn.diag
[2026-02-27 18:20:11] -rw-r--r-- 1 boinc boinc     12723 Feb 27 18:20 stderr.txt
[2026-02-27 18:20:11] HITS file was successfully produced:
[2026-02-27 18:20:11] -rw------- 1 boinc boinc 288734141 Feb 27 18:19 shared/HITS.pool.root.1
[2026-02-27 18:20:11]  *** Contents of shared directory: ***
[2026-02-27 18:20:11] total 948696
[2026-02-27 18:20:11] -rw-r--r-- 2 boinc boinc 680979734 Feb 27 16:43 ATLAS.root_0
[2026-02-27 18:20:11] -rw-r--r-- 2 boinc boinc    597950 Feb 27 16:43 input.tar.gz
[2026-02-27 18:20:11] -rw-r--r-- 2 boinc boinc     15845 Feb 27 16:43 start_atlas.sh
[2026-02-27 18:20:11] -rw------- 1 boinc boinc 288734141 Feb 27 18:19 HITS.pool.root.1
[2026-02-27 18:20:11] -rw------- 1 boinc boinc   1126400 Feb 27 18:20 result.tar.gz
18:20:12 (591624): run_atlas exited; CPU time 21972.731065
18:20:12 (591624): called boinc_finish(0)

</stderr_txt>
]]>

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