Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:47:05 (422656): wrapper (7.7.26015): starting
13:47:05 (422656): wrapper: running run_atlas (--nthreads 3)
[2026-02-27 13:47:05] Arguments: --nthreads 3
[2026-02-27 13:47:05] Threads: 3
[2026-02-27 13:47:05] Checking for CVMFS
[2026-02-27 13:47:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 13:47:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 13:47:05] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 13:47:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 13:47:05] 2.9.2.0 38142 2662 77484 156695 3 50 27547213 36864000 0 130560 0 1085222 99.977 116205 9883 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 13:47:05] CVMFS is ok
[2026-02-27 13:47:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 13:47:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 13:47:05] Further information can be found at the LHC@home message board.
[2026-02-27 13:47:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 13:47:05] Checking for apptainer binary...
[2026-02-27 13:47:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 13:47:05] Running /usr/bin/apptainer --version
[2026-02-27 13:47:05] apptainer version 1.4.1-1.1
[2026-02-27 13:47:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 13:47:05] thA312a
[2026-02-27 13:47:05] apptainer works
[2026-02-27 13:47:05] Set ATHENA_PROC_NUMBER=3
[2026-02-27 13:47:05] Set ATHENA_CORE_NUMBER=3
[2026-02-27 13:47:05] Starting ATLAS job with PandaID=7030886169
[2026-02-27 13:47:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 15:54:30]  *** The last 200 lines of the pilot log: ***
[2026-02-27 15:54:30] 2026-02-27 14:53:41,573 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 15:54:30] 2026-02-27 14:53:41,573 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 15:54:30] 2026-02-27 14:53:41,573 | INFO     | job 7030886169 has completed (purged errors)
[2026-02-27 15:54:30] 2026-02-27 14:53:41,573 | INFO     | overall cleanup function is called
[2026-02-27 15:54:30] 2026-02-27 14:53:42,579 | INFO     | --- collectZombieJob: --- 10, [431123]
[2026-02-27 15:54:30] 2026-02-27 14:53:42,580 | INFO     | zombie collector waiting for pid 431123
[2026-02-27 15:54:30] 2026-02-27 14:53:42,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 15:54:30] 2026-02-27 14:53:42,580 | INFO     | collected zombie processes
[2026-02-27 15:54:30] 2026-02-27 14:53:42,580 | INFO     | will attempt to kill all subprocesses of pid=431123
[2026-02-27 15:54:30] 2026-02-27 14:53:42,620 | INFO     | process IDs to be killed: [431123] (in reverse order)
[2026-02-27 15:54:30] 2026-02-27 14:53:42,645 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 15:54:30] 2026-02-27 14:53:42,645 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 15:54:30] 2026-02-27 14:53:42,646 | INFO     | did not find any defunct processes belonging to 431123
[2026-02-27 15:54:30] 2026-02-27 14:53:42,647 | INFO     | did not find any defunct processes belonging to 431123
[2026-02-27 15:54:30] 2026-02-27 14:53:42,647 | INFO     | ready for new job
[2026-02-27 15:54:30] 2026-02-27 14:53:42,647 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 15:54:30] 2026-02-27 14:53:42,648 | INFO     | **************************************
[2026-02-27 15:54:30] 2026-02-27 14:53:42,648 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 15:54:30] 2026-02-27 14:53:42,648 | INFO     | **************************************
[2026-02-27 15:54:30] 2026-02-27 14:53:42,648 | INFO     | 
[2026-02-27 15:54:30] 2026-02-27 14:53:42,649 | INFO     | architecture information:
[2026-02-27 15:54:30] 2026-02-27 14:53:42,649 | INFO     | executing command: cat /etc/os-release
[2026-02-27 15:54:30] 2026-02-27 14:53:42,658 | INFO     | cat /etc/os-release:
[2026-02-27 15:54:30] NAME="CentOS Linux"
[2026-02-27 15:54:30] VERSION="7 (Core)"
[2026-02-27 15:54:30] ID="centos"
[2026-02-27 15:54:30] ID_LIKE="rhel fedora"
[2026-02-27 15:54:30] VERSION_ID="7"
[2026-02-27 15:54:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 15:54:30] ANSI_COLOR="0;31"
[2026-02-27 15:54:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 15:54:30] HOME_URL="https://www.centos.org/"
[2026-02-27 15:54:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 15:54:30] 
[2026-02-27 15:54:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 15:54:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 15:54:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 15:54:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 15:54:30] 
[2026-02-27 15:54:30] 2026-02-27 14:53:42,658 | INFO     | **************************************
[2026-02-27 15:54:30] 2026-02-27 14:53:43,161 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-27 15:54:30] 2026-02-27 14:53:43,174 | INFO     | sufficient remaining disk space (276275658752 B)
[2026-02-27 15:54:30] 2026-02-27 14:53:43,174 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 15:54:30] 2026-02-27 14:53:43,174 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 15:54:30] 2026-02-27 14:53:43,174 | INFO     | update_server=False
[2026-02-27 15:54:30] 2026-02-27 14:53:43,174 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 15:54:30] 2026-02-27 14:53:43,174 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 15:54:30] 2026-02-27 14:53:43,175 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 15:54:30] 2026-02-27 14:53:43,175 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-27 15:54:30] 2026-02-27 14:53:43,175 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 15:54:30] 2026-02-27 14:53:43,175 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 15:54:30] 2026-02-27 14:53:43,175 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 15:54:30] 2026-02-27 14:53:43,237 | INFO     | all payload control threads have been joined
[2026-02-27 15:54:30] 2026-02-27 14:53:43,510 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 15:54:30] 2026-02-27 14:53:43,687 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 15:54:30] 2026-02-27 14:53:43,687 | INFO     | aborting loop
[2026-02-27 15:54:30] 2026-02-27 14:53:44,180 | INFO     | [job] retrieve thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:44,180 | INFO     | [job] queue monitor thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:44,187 | INFO     | all data control threads have been joined
[2026-02-27 15:54:30] 2026-02-27 14:53:44,243 | INFO     | [payload] control thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:44,389 | INFO     | all job control threads have been joined
[2026-02-27 15:54:30] 2026-02-27 14:53:44,639 | INFO     | [payload] validate_post thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:44,693 | INFO     | [job] job monitor thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:45,105 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:45,192 | INFO     | [data] control thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:45,251 | INFO     | [job] validate thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:45,303 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:45,308 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:45,395 | INFO     | [job] control thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:45,499 | INFO     | [data] copytool_in thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:45,516 | INFO     | [data] copytool_out thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:45,706 | INFO     | [payload] failed_post thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:47,182 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:53:54,182 | INFO     | job.realtimelogging is not enabled
[2026-02-27 15:54:30] 2026-02-27 14:53:55,188 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 15:54:30] 2026-02-27 14:54:24,520 | INFO     | [monitor] cgroup control has ended
[2026-02-27 15:54:30] 2026-02-27 14:54:25,526 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140587682535232)>', '<ExcThread(monitor, started 140586795382528)>']
[2026-02-27 15:54:30] 2026-02-27 14:54:26,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 15:54:30] 2026-02-27 14:54:26,401 | INFO     | [monitor] control thread has ended
[2026-02-27 15:54:30] 2026-02-27 14:54:30,551 | INFO     | all workflow threads have been joined
[2026-02-27 15:54:30] 2026-02-27 14:54:30,552 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 15:54:30] 2026-02-27 14:54:30,552 | INFO     | traces error code: 0
[2026-02-27 15:54:30] 2026-02-27 14:54:30,552 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 15:54:30] 2026-02-27 14:54:30,605 [wrapper] ==== pilot stdout END ====
[2026-02-27 15:54:30] 2026-02-27 14:54:30,607 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 15:54:30] 2026-02-27 14:54:30,610 [wrapper] pilotpid: 426701
[2026-02-27 15:54:30] 2026-02-27 14:54:30,612 [wrapper] Pilot exit status: 0
[2026-02-27 15:54:30] 2026-02-27 14:54:30,620 [wrapper] pandaids: 7030886169
[2026-02-27 15:54:30] 2026-02-27 14:54:30,638 [wrapper] cleanup supervisor_pilot  436646 426702
[2026-02-27 15:54:30] 2026-02-27 14:54:30,640 [wrapper] Test setup, not cleaning
[2026-02-27 15:54:30] 2026-02-27 14:54:30,643 [wrapper] apfmon messages muted
[2026-02-27 15:54:30] 2026-02-27 14:54:30,645 [wrapper] ==== wrapper stdout END ====
[2026-02-27 15:54:30] 2026-02-27 14:54:30,648 [wrapper] ==== wrapper stderr END ====
[2026-02-27 15:54:30]  *** Error codes and diagnostics ***
[2026-02-27 15:54:30]     "exeErrorCode": 0,
[2026-02-27 15:54:30]     "exeErrorDiag": "",
[2026-02-27 15:54:30]     "pilotErrorCode": 0,
[2026-02-27 15:54:30]     "pilotErrorDiag": "",
[2026-02-27 15:54:30]  *** Listing of results directory ***
[2026-02-27 15:54:30] total 570040
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc    584627 Feb 26 17:50 pilot3.tar.gz
[2026-02-27 15:54:30] -rwx------ 1 boinc boinc     36322 Feb 26 17:53 runpilot2-wrapper.sh
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc      5111 Feb 26 17:53 queuedata.json
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc       100 Feb 27 13:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 15:54:30] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 13:47 run_atlas
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc       105 Feb 27 13:47 job.xml
[2026-02-27 15:54:30] -rw-r--r-- 2 boinc boinc 307579677 Feb 27 13:47 EVNT.48448892._000001.pool.root.1
[2026-02-27 15:54:30] -rw-r--r-- 2 boinc boinc    597948 Feb 27 13:47 input.tar.gz
[2026-02-27 15:54:30] -rw-r--r-- 2 boinc boinc     15845 Feb 27 13:47 start_atlas.sh
[2026-02-27 15:54:30] drwxrwx--x 2 boinc boinc      4096 Feb 27 13:47 shared
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc         0 Feb 27 13:47 boinc_setup_complete
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc      6446 Feb 27 13:47 init_data.xml
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc         0 Feb 27 13:47 boinc_lockfile
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc      2591 Feb 27 13:47 pandaJob.out
[2026-02-27 15:54:30] -rw------- 1 boinc boinc    998473 Feb 27 13:47 agis_schedconf.cvmfs.json
[2026-02-27 15:54:30] -rw------- 1 boinc boinc   1516111 Feb 27 13:47 agis_ddmendpoints.agis.ALL.json
[2026-02-27 15:54:30] -rw------- 1 boinc boinc       424 Feb 27 13:47 workernode_map.json
[2026-02-27 15:54:30] drwx------ 5 boinc boinc      4096 Feb 27 13:47 pilot3
[2026-02-27 15:54:30] -rw------- 1 boinc boinc        95 Feb 27 15:52 pilot_heartbeat.json
[2026-02-27 15:54:30] -rw------- 1 boinc boinc 269496291 Feb 27 15:53 HITS.48842658._000002.pool.root.1
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc       529 Feb 27 15:53 boinc_task_state.xml
[2026-02-27 15:54:30] -rw------- 1 boinc boinc      1018 Feb 27 15:53 memory_monitor_summary.json
[2026-02-27 15:54:30] -rw------- 1 boinc boinc    278302 Feb 27 15:53 log.48842658._000002.job.log.tgz.1
[2026-02-27 15:54:30] -rw------- 1 boinc boinc      6281 Feb 27 15:53 heartbeat.json
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc      8192 Feb 27 15:54 boinc_mmap_file
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc        27 Feb 27 15:54 wrapper_checkpoint.txt
[2026-02-27 15:54:30] -rw------- 1 boinc boinc      4624 Feb 27 15:54 pilotlog.txt
[2026-02-27 15:54:30] -rw------- 1 boinc boinc   1088998 Feb 27 15:54 log.48842658._000002.job.log.1
[2026-02-27 15:54:30] -rw------- 1 boinc boinc       357 Feb 27 15:54 output.list
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc       620 Feb 27 15:54 runtime_log
[2026-02-27 15:54:30] -rw------- 1 boinc boinc   1382400 Feb 27 15:54 result.tar.gz
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc      8901 Feb 27 15:54 runtime_log.err
[2026-02-27 15:54:30] -rw------- 1 boinc boinc       658 Feb 27 15:54 KWpNDmXntF9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmhS3KDmkjDpGo.diag
[2026-02-27 15:54:30] -rw-r--r-- 1 boinc boinc     11017 Feb 27 15:54 stderr.txt
[2026-02-27 15:54:30] HITS file was successfully produced:
[2026-02-27 15:54:30] -rw------- 1 boinc boinc 269496291 Feb 27 15:53 shared/HITS.pool.root.1
[2026-02-27 15:54:30]  *** Contents of shared directory: ***
[2026-02-27 15:54:30] total 565508
[2026-02-27 15:54:30] -rw-r--r-- 2 boinc boinc 307579677 Feb 27 13:47 ATLAS.root_0
[2026-02-27 15:54:30] -rw-r--r-- 2 boinc boinc    597948 Feb 27 13:47 input.tar.gz
[2026-02-27 15:54:30] -rw-r--r-- 2 boinc boinc     15845 Feb 27 13:47 start_atlas.sh
[2026-02-27 15:54:30] -rw------- 1 boinc boinc 269496291 Feb 27 15:53 HITS.pool.root.1
[2026-02-27 15:54:30] -rw------- 1 boinc boinc   1382400 Feb 27 15:54 result.tar.gz
15:54:32 (422656): run_atlas exited; CPU time 22019.561109
15:54:32 (422656): called boinc_finish(0)

</stderr_txt>
]]>

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