Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:15:27 (2898930): wrapper (7.7.26015): starting
00:15:27 (2898930): wrapper: running run_atlas (--nthreads 11)
[2026-02-28 00:15:27] Arguments: --nthreads 11
[2026-02-28 00:15:27] Threads: 11
[2026-02-28 00:15:27] Checking for CVMFS
[2026-02-28 00:15:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-28 00:15:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-28 00:15:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-28 00:15:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-28 00:15:30] 2.13.3.0 11596 46907 350752 156721 0 354 31639065 40960001 23768 16776704 0 44104338 99.500 59964763 11375 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-28 00:15:30] CVMFS is ok
[2026-02-28 00:15:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-28 00:15:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-28 00:15:30] Further information can be found at the LHC@home message board.
[2026-02-28 00:15:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-28 00:15:30] Checking for apptainer binary...
[2026-02-28 00:15:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-28 00:15:30] Running /usr/bin/apptainer --version
[2026-02-28 00:15:30] apptainer version 1.4.5-2.el9
[2026-02-28 00:15:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-28 00:15:31] c7-10-13.aglt2.org
[2026-02-28 00:15:31] apptainer works
[2026-02-28 00:15:32] Set ATHENA_PROC_NUMBER=11
[2026-02-28 00:15:32] Set ATHENA_CORE_NUMBER=11
[2026-02-28 00:15:32] Starting ATLAS job with PandaID=7031090074
[2026-02-28 00:15:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 15:56:01]  *** The last 200 lines of the pilot log: ***
[2026-02-28 15:56:01] 2026-02-28 20:55:07,569 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-28 15:56:01] 2026-02-28 20:55:08,177 | INFO     | time since job start (56281s) is within the limit (349056.0s)
[2026-02-28 15:56:01] 2026-02-28 20:55:10,010 | INFO     | monitor loop #2929: job 0:7031090074 is in state 'finished'
[2026-02-28 15:56:01] 2026-02-28 20:55:10,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 15:56:01] 2026-02-28 20:55:10,195 | INFO     | time since job start (56283s) is within the limit (349056.0s)
[2026-02-28 15:56:01] 2026-02-28 20:55:10,196 | INFO     | job 7031090074 has state=finished
[2026-02-28 15:56:01] 2026-02-28 20:55:10,196 | INFO     | preparing for final server update for job 7031090074 in state='finished'
[2026-02-28 15:56:01] 2026-02-28 20:55:10,196 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7031090074/jobReport.json
[2026-02-28 15:56:01] 2026-02-28 20:55:10,275 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-28 15:56:01] 2026-02-28 20:55:10,316 | INFO     | this job has now completed (state=finished)
[2026-02-28 15:56:01] 2026-02-28 20:55:10,325 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-28 15:56:01] 2026-02-28 20:55:10,325 | INFO     | log transfer has been attempted: DONE
[2026-02-28 15:56:01] 2026-02-28 20:55:10,325 | INFO     | job 7031090074 has finished - writing final server update
[2026-02-28 15:56:01] 2026-02-28 20:55:10,326 | INFO     | total number of processed events: 400 (read)
[2026-02-28 15:56:01] 2026-02-28 20:55:10,482 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7031090074/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 15:56:01] 2026-02-28 20:55:10,484 | INFO     | extracted standard info from prmon json
[2026-02-28 15:56:01] 2026-02-28 20:55:10,484 | INFO     | extracted standard memory fields from prmon json
[2026-02-28 15:56:01] 2026-02-28 20:55:10,484 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-28 15:56:01] 2026-02-28 20:55:10,485 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-28 15:56:01] 2026-02-28 20:55:10,485 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-28 15:56:01] 2026-02-28 20:55:10,570 | INFO     | fitting pss+swap vs Time
[2026-02-28 15:56:01] 2026-02-28 20:55:10,652 | INFO     | sum of square deviations: 241452268963.06094
[2026-02-28 15:56:01] 2026-02-28 20:55:11,280 | INFO     | sum of deviations: 2735303762277.681
[2026-02-28 15:56:01] 2026-02-28 20:55:11,491 | INFO     | mean x: 1772284001.3565218
[2026-02-28 15:56:01] 2026-02-28 20:55:11,491 | INFO     | mean y: 2548868.452173913
[2026-02-28 15:56:01] 2026-02-28 20:55:11,491 | INFO     | intersect: -20074856564.737923
[2026-02-28 15:56:01] 2026-02-28 20:55:11,502 | INFO     | chi2: 19.710782583715165
[2026-02-28 15:56:01] 2026-02-28 20:55:11,510 | INFO     | sum of square deviations: 237537049839.37512
[2026-02-28 15:56:01] 2026-02-28 20:55:12,280 | INFO     | sum of deviations: 2971389332354.1187
[2026-02-28 15:56:01] 2026-02-28 20:55:12,280 | INFO     | mean x: 1772283848.8612022
[2026-02-28 15:56:01] 2026-02-28 20:55:12,281 | INFO     | mean y: 2558053.1978142075
[2026-02-28 15:56:01] 2026-02-28 20:55:12,281 | INFO     | intersect: -22167226938.114883
[2026-02-28 15:56:01] 2026-02-28 20:55:12,344 | INFO     | chi2: 16.807751812580328
[2026-02-28 15:56:01] 2026-02-28 20:55:12,345 | INFO     | current chi2=16.807751812580328 (change=14.728135520774755 %)
[2026-02-28 15:56:01] 2026-02-28 20:55:12,345 | INFO     | right removable region: 914
[2026-02-28 15:56:01] 2026-02-28 20:55:12,379 | INFO     | sum of square deviations: 237536569159.37552
[2026-02-28 15:56:01] 2026-02-28 20:55:12,714 | INFO     | monitor loop #2930: job 0:7031090074 is in state 'finished'
[2026-02-28 15:56:01] 2026-02-28 20:55:12,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 15:56:01] 2026-02-28 20:55:13,242 | INFO     | sum of deviations: 2401842152158.5366
[2026-02-28 15:56:01] 2026-02-28 20:55:13,243 | INFO     | mean x: 1772284153.8612022
[2026-02-28 15:56:01] 2026-02-28 20:55:13,269 | INFO     | mean y: 2561852.8939890712
[2026-02-28 15:56:01] 2026-02-28 20:55:13,269 | INFO     | intersect: -17917823212.07001
[2026-02-28 15:56:01] 2026-02-28 20:55:13,293 | INFO     | chi2: 15.109083958836292
[2026-02-28 15:56:01] 2026-02-28 20:55:13,294 | INFO     | current chi2=15.109083958836292 (change=23.3460980320525 %)
[2026-02-28 15:56:01] 2026-02-28 20:55:13,294 | INFO     | left removable region: 10
[2026-02-28 15:56:01] 2026-02-28 20:55:13,319 | INFO     | sum of square deviations: 229072086786.59735
[2026-02-28 15:56:01] 2026-02-28 20:55:13,941 | INFO     | sum of deviations: 2373608248579.9097
[2026-02-28 15:56:01] 2026-02-28 20:55:13,941 | INFO     | mean x: 1772284123.369469
[2026-02-28 15:56:01] 2026-02-28 20:55:13,941 | INFO     | mean y: 2581421.655973451
[2026-02-28 15:56:01] 2026-02-28 20:55:13,942 | INFO     | intersect: -18361542610.513596
[2026-02-28 15:56:01] 2026-02-28 20:55:14,000 | INFO     | chi2: 9.546717793822577
[2026-02-28 15:56:01] 2026-02-28 20:55:14,001 | INFO     | current memory leak: 10.36 B/s (using 904 data points, chi2=9.55)
[2026-02-28 15:56:01] 2026-02-28 20:55:14,003 | INFO     | could have reported an average CPU frequency of 3290 MHz (35 samples)
[2026-02-28 15:56:01] 2026-02-28 20:55:14,003 | INFO     | ..............................
[2026-02-28 15:56:01] 2026-02-28 20:55:14,068 | INFO     | . Timing measurements:
[2026-02-28 15:56:01] 2026-02-28 20:55:14,068 | INFO     | . get job = 0 s
[2026-02-28 15:56:01] 2026-02-28 20:55:14,068 | INFO     | . initial setup = 34 s
[2026-02-28 15:56:01] 2026-02-28 20:55:14,069 | INFO     | . payload setup = 53 s
[2026-02-28 15:56:01] 2026-02-28 20:55:14,069 | INFO     | . stage-in = 0 s
[2026-02-28 15:56:01] 2026-02-28 20:55:14,069 | INFO     | . payload execution = 56182 s
[2026-02-28 15:56:01] 2026-02-28 20:55:14,069 | INFO     | . stage-out = 13 s
[2026-02-28 15:56:01] 2026-02-28 20:55:14,070 | INFO     | . log creation = 1 s
[2026-02-28 15:56:01] 2026-02-28 20:55:14,070 | INFO     | ..............................
[2026-02-28 15:56:01] 2026-02-28 20:55:15,395 | INFO     | 
[2026-02-28 15:56:01] 2026-02-28 20:55:15,395 | INFO     | job summary report
[2026-02-28 15:56:01] 2026-02-28 20:55:15,395 | INFO     | --------------------------------------------------
[2026-02-28 15:56:01] 2026-02-28 20:55:15,395 | INFO     | PanDA job id: 7031090074
[2026-02-28 15:56:01] 2026-02-28 20:55:15,396 | INFO     | task id: 48838432
[2026-02-28 15:56:01] 2026-02-28 20:55:15,396 | INFO     | errors: (none)
[2026-02-28 15:56:01] 2026-02-28 20:55:15,396 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-28 15:56:01] 2026-02-28 20:55:15,396 | INFO     | pilot state: finished 
[2026-02-28 15:56:01] 2026-02-28 20:55:15,396 | INFO     | transexitcode: 0
[2026-02-28 15:56:01] 2026-02-28 20:55:15,397 | INFO     | exeerrorcode: 0
[2026-02-28 15:56:01] 2026-02-28 20:55:15,397 | INFO     | exeerrordiag: 
[2026-02-28 15:56:01] 2026-02-28 20:55:15,397 | INFO     | exitcode: 0
[2026-02-28 15:56:01] 2026-02-28 20:55:15,397 | INFO     | exitmsg: OK
[2026-02-28 15:56:01] 2026-02-28 20:55:15,397 | INFO     | cpuconsumptiontime: 122078 s
[2026-02-28 15:56:01] 2026-02-28 20:55:15,397 | INFO     | nevents: 400
[2026-02-28 15:56:01] 2026-02-28 20:55:15,398 | INFO     | neventsw: 0
[2026-02-28 15:56:01] 2026-02-28 20:55:15,398 | INFO     | pid: 2908019
[2026-02-28 15:56:01] 2026-02-28 20:55:15,398 | INFO     | pgrp: 2908019
[2026-02-28 15:56:01] 2026-02-28 20:55:15,398 | INFO     | corecount: 11
[2026-02-28 15:56:01] 2026-02-28 20:55:15,398 | INFO     | event service: False
[2026-02-28 15:56:01] 2026-02-28 20:55:15,424 | INFO     | sizes: {0: 2281803, 1: 2245832, 2: 2282260, 3: 2282348, 14: 2282376, 56243: 2331439, 56245: 2331566, 56262: 2340620, 56266: 2340676, 56273: 2340870}
[2026-02-28 15:56:01] 2026-02-28 20:55:15,424 | INFO     | --------------------------------------------------
[2026-02-28 15:56:01] 2026-02-28 20:55:15,424 | INFO     | 
[2026-02-28 15:56:01] 2026-02-28 20:55:15,424 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-28 15:56:01] 2026-02-28 20:55:15,812 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,812 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,812 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,813 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,813 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,813 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,813 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,813 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,813 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,814 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,814 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,814 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,814 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,814 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,835 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,835 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,835 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 15:56:01] 2026-02-28 20:55:15,835 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,836 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 15:56:01] 2026-02-28 20:55:15,836 | INFO     | job 7031090074 has completed (purged errors)
[2026-02-28 15:56:01] 2026-02-28 20:55:15,836 | INFO     | overall cleanup function is called
[2026-02-28 15:56:01] 2026-02-28 20:55:16,935 | INFO     | --- collectZombieJob: --- 10, [2908019]
[2026-02-28 15:56:01] 2026-02-28 20:55:16,941 | INFO     | zombie collector waiting for pid 2908019
[2026-02-28 15:56:01] 2026-02-28 20:55:16,942 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 15:56:01] 2026-02-28 20:55:16,942 | INFO     | collected zombie processes
[2026-02-28 15:56:01] 2026-02-28 20:55:16,942 | INFO     | will attempt to kill all subprocesses of pid=2908019
[2026-02-28 15:56:01] 2026-02-28 20:55:23,125 | INFO     | PID=2902910 has CPU usage=15.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-28 15:56:01] 2026-02-28 20:55:23,125 | INFO     | .. there are 26 such processes running
[2026-02-28 15:56:01] 2026-02-28 20:55:25,609 | INFO     | process IDs to be killed: [2908019] (in reverse order)
[2026-02-28 15:56:01] 2026-02-28 20:55:26,391 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 15:56:01] 2026-02-28 20:55:26,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 15:56:01] 2026-02-28 20:55:26,470 | INFO     | did not find any defunct processes belonging to 2908019
[2026-02-28 15:56:01] 2026-02-28 20:55:26,506 | INFO     | did not find any defunct processes belonging to 2908019
[2026-02-28 15:56:01] 2026-02-28 20:55:26,506 | INFO     | ready for new job
[2026-02-28 15:56:01] 2026-02-28 20:55:26,507 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 15:56:01] 2026-02-28 20:55:26,578 | INFO     | **************************************
[2026-02-28 15:56:01] 2026-02-28 20:55:26,579 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 15:56:01] 2026-02-28 20:55:26,579 | INFO     | **************************************
[2026-02-28 15:56:01] 2026-02-28 20:55:26,579 | INFO     | 
[2026-02-28 15:56:01] 2026-02-28 20:55:26,676 | INFO     | architecture information:
[2026-02-28 15:56:01] 2026-02-28 20:55:26,677 | INFO     | executing command: cat /etc/os-release
[2026-02-28 15:56:01] 2026-02-28 20:55:26,830 | INFO     | cat /etc/os-release:
[2026-02-28 15:56:01] NAME="CentOS Linux"
[2026-02-28 15:56:01] VERSION="7 (Core)"
[2026-02-28 15:56:01] ID="centos"
[2026-02-28 15:56:01] ID_LIKE="rhel fedora"
[2026-02-28 15:56:01] VERSION_ID="7"
[2026-02-28 15:56:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 15:56:01] ANSI_COLOR="0;31"
[2026-02-28 15:56:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 15:56:01] HOME_URL="https://www.centos.org/"
[2026-02-28 15:56:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 15:56:01] 
[2026-02-28 15:56:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 15:56:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 15:56:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 15:56:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 15:56:01] 
[2026-02-28 15:56:01] 2026-02-28 20:55:26,831 | INFO     | **************************************
[2026-02-28 15:56:01] 2026-02-28 20:55:27,335 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-28 15:56:01] 2026-02-28 20:55:27,532 | INFO     | sufficient remaining disk space (84356890624 B)
[2026-02-28 15:56:01] 2026-02-28 20:55:27,533 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 15:56:01] 2026-02-28 20:55:27,533 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 15:56:01] 2026-02-28 20:55:27,534 | INFO     | update_server=False
[2026-02-28 15:56:01] 2026-02-28 20:55:27,534 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 15:56:01] 2026-02-28 20:55:27,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 15:56:01] 2026-02-28 20:55:27,558 | INFO     | aborting loop
[2026-02-28 15:56:01] 2026-02-28 20:55:27,661 | INFO     | all job control threads have been joined
[2026-02-28 15:56:01] 2026-02-28 20:55:28,013 | INFO     | all data control threads have been joined
[2026-02-28 15:56:01] 2026-02-28 20:55:28,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 15:56:01] 2026-02-28 20:55:28,303 | INFO     | all payload control threads have been joined
[2026-02-28 15:56:01] 2026-02-28 20:55:28,334 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 15:56:01] 2026-02-28 20:55:28,550 | INFO     | [job] retrieve thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:28,564 | INFO     | [job] job monitor thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:28,678 | INFO     | [job] control thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:28,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 15:56:01] 2026-02-28 20:55:29,020 | INFO     | [data] control thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:29,311 | INFO     | [payload] control thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:29,395 | INFO     | [data] copytool_in thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:29,406 | INFO     | [job] validate thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:29,413 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:29,419 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:29,514 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:29,523 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:29,713 | INFO     | [job] queue monitor thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:29,724 | INFO     | [payload] failed_post thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:30,023 | INFO     | [payload] validate_post thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:30,345 | INFO     | [data] copytool_out thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:32,217 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 15:56:01] 2026-02-28 20:55:46,379 | INFO     | [monitor] cgroup control has ended
[2026-02-28 15:56:01] 2026-02-28 20:55:48,256 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140118687315776)>', '<ExcThread(monitor, started 140118316795648)>']
[2026-02-28 15:56:01] 2026-02-28 20:55:53,293 | INFO     | all workflow threads have been joined
[2026-02-28 15:56:01] 2026-02-28 20:55:53,294 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 15:56:01] 2026-02-28 20:55:53,294 | INFO     | traces error code: 0
[2026-02-28 15:56:01] 2026-02-28 20:55:53,295 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 15:56:01] 2026-02-28 20:55:56,442 | INFO     | PID=2902910 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-28 15:56:01] 2026-02-28 20:55:56,442 | INFO     | .. there are 26 such processes running
[2026-02-28 15:56:01] 2026-02-28 20:55:56,444 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 15:56:01] 2026-02-28 20:55:56,444 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 15:56:01] 2026-02-28 20:55:56,444 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 15:56:01] 2026-02-28 20:55:56,444 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 15:56:01] 2026-02-28 20:55:56,444 | INFO     | [monitor] control thread has ended
[2026-02-28 15:56:01] 2026-02-28 20:56:00,114 [wrapper] ==== pilot stdout END ====
[2026-02-28 15:56:01] 2026-02-28 20:56:00,187 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 15:56:01] 2026-02-28 20:56:00,212 [wrapper] pilotpid: 2902910
[2026-02-28 15:56:01] 2026-02-28 20:56:00,217 [wrapper] Pilot exit status: 0
[2026-02-28 15:56:01] 2026-02-28 20:56:00,466 [wrapper] pandaids: 7031090074
[2026-02-28 15:56:01] 2026-02-28 20:56:00,984 [wrapper] cleanup supervisor_pilot  548994 2902911
[2026-02-28 15:56:01] 2026-02-28 20:56:01,046 [wrapper] Test setup, not cleaning
[2026-02-28 15:56:01] 2026-02-28 20:56:01,058 [wrapper] apfmon messages muted
[2026-02-28 15:56:01] 2026-02-28 20:56:01,064 [wrapper] ==== wrapper stdout END ====
[2026-02-28 15:56:01] 2026-02-28 20:56:01,098 [wrapper] ==== wrapper stderr END ====
[2026-02-28 15:56:01]  *** Error codes and diagnostics ***
[2026-02-28 15:56:01]     "exeErrorCode": 0,
[2026-02-28 15:56:01]     "exeErrorDiag": "",
[2026-02-28 15:56:01]     "pilotErrorCode": 0,
[2026-02-28 15:56:01]     "pilotErrorDiag": "",
[2026-02-28 15:56:01]  *** Listing of results directory ***
[2026-02-28 15:56:01] total 525720
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas      5111 Feb 26 19:16 queuedata.json
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas    584627 Feb 26 19:16 pilot3.tar.gz
[2026-02-28 15:56:01] -rwx------. 1 boincer umatlas     36322 Feb 26 19:17 runpilot2-wrapper.sh
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas       100 Feb 28 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 15:56:01] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 28 00:15 run_atlas
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas       105 Feb 28 00:15 job.xml
[2026-02-28 15:56:01] -rw-r--r--. 2 boincer umatlas 291439279 Feb 28 00:15 EVNT.48220101._000111.pool.root.1
[2026-02-28 15:56:01] drwxrwx--x. 2 boincer umatlas      4096 Feb 28 00:15 shared
[2026-02-28 15:56:01] -rw-r--r--. 2 boincer umatlas    597978 Feb 28 00:15 input.tar.gz
[2026-02-28 15:56:01] -rw-r--r--. 2 boincer umatlas     15845 Feb 28 00:15 start_atlas.sh
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas         0 Feb 28 00:15 boinc_lockfile
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas      2580 Feb 28 00:15 pandaJob.out
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas        57 Feb 28 00:15 setup.sh.local
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas    998782 Feb 28 00:16 agis_schedconf.cvmfs.json
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas       426 Feb 28 00:17 workernode_map.json
[2026-02-28 15:56:01] drwx------. 5 boincer umatlas      4096 Feb 28 00:17 pilot3
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas 228280901 Feb 28 15:50 HITS.48838432._002853.pool.root.1
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas       532 Feb 28 15:50 boinc_task_state.xml
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas      6911 Feb 28 15:54 init_data.xml
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas      1032 Feb 28 15:54 memory_monitor_summary.json
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas   1513015 Feb 28 15:54 agis_ddmendpoints.agis.ALL.json
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas    986624 Feb 28 15:54 log.48838432._002853.job.log.tgz.1
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas      6333 Feb 28 15:55 heartbeat.json
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas        29 Feb 28 15:55 wrapper_checkpoint.txt
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas      8192 Feb 28 15:55 boinc_mmap_file
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas        95 Feb 28 15:55 pilot_heartbeat.json
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas       823 Feb 28 15:55 pilotlog.txt
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas   6360344 Feb 28 15:56 log.48838432._002853.job.log.1
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas       357 Feb 28 15:56 output.list
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas       620 Feb 28 15:56 runtime_log
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas   7362560 Feb 28 15:56 result.tar.gz
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas      9344 Feb 28 15:56 runtime_log.err
[2026-02-28 15:56:01] -rw-------. 1 boincer umatlas       659 Feb 28 15:56 PLNKDmki0F9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmVz3KDmO0QnEm.diag
[2026-02-28 15:56:01] -rw-r--r--. 1 boincer umatlas     21693 Feb 28 15:56 stderr.txt
[2026-02-28 15:56:02] HITS file was successfully produced:
[2026-02-28 15:56:02] -rw-------. 1 boincer umatlas 228280901 Feb 28 15:50 shared/HITS.pool.root.1
[2026-02-28 15:56:02]  *** Contents of shared directory: ***
[2026-02-28 15:56:02] total 515340
[2026-02-28 15:56:02] -rw-r--r--. 2 boincer umatlas 291439279 Feb 28 00:15 ATLAS.root_0
[2026-02-28 15:56:02] -rw-r--r--. 2 boincer umatlas    597978 Feb 28 00:15 input.tar.gz
[2026-02-28 15:56:02] -rw-r--r--. 2 boincer umatlas     15845 Feb 28 00:15 start_atlas.sh
[2026-02-28 15:56:02] -rw-------. 1 boincer umatlas 228280901 Feb 28 15:50 HITS.pool.root.1
[2026-02-28 15:56:02] -rw-------. 1 boincer umatlas   7362560 Feb 28 15:56 result.tar.gz
15:56:04 (2898930): run_atlas exited; CPU time 125303.099027
15:56:04 (2898930): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN