Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:52:58 (286042): wrapper (7.7.26015): starting
22:52:58 (286042): wrapper: running run_atlas (--nthreads 2)
[2026-02-27 22:52:58] Arguments: --nthreads 2
[2026-02-27 22:52:58] Threads: 2
[2026-02-27 22:52:58] Checking for CVMFS
[2026-02-27 22:52:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 22:52:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 22:52:58] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 22:52:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 22:52:58] 2.9.2.0 6350 3342 58620 156708 1 49 24804550 36864001 0 130560 0 825550 99.967 139001 713 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 22:52:58] CVMFS is ok
[2026-02-27 22:52:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 22:52:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 22:52:58] Further information can be found at the LHC@home message board.
[2026-02-27 22:52:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 22:52:58] Checking for apptainer binary...
[2026-02-27 22:52:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 22:52:58] Running /usr/bin/apptainer --version
[2026-02-27 22:52:58] apptainer version 1.4.1-1.1
[2026-02-27 22:52:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 22:52:58] legendA165
[2026-02-27 22:52:58] apptainer works
[2026-02-27 22:52:58] Set ATHENA_PROC_NUMBER=2
[2026-02-27 22:52:58] Set ATHENA_CORE_NUMBER=2
[2026-02-27 22:52:58] Starting ATLAS job with PandaID=7031064118
[2026-02-27 22:52:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 00:42:32]  *** The last 200 lines of the pilot log: ***
[2026-02-28 00:42:32] 2026-02-27 23:42:00,841 | INFO     | --- collectZombieJob: --- 10, [294484]
[2026-02-28 00:42:32] 2026-02-27 23:42:00,841 | INFO     | zombie collector waiting for pid 294484
[2026-02-28 00:42:32] 2026-02-27 23:42:00,841 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 00:42:32] 2026-02-27 23:42:00,842 | INFO     | collected zombie processes
[2026-02-28 00:42:32] 2026-02-27 23:42:00,842 | INFO     | will attempt to kill all subprocesses of pid=294484
[2026-02-28 00:42:32] 2026-02-27 23:42:00,871 | INFO     | process IDs to be killed: [294484] (in reverse order)
[2026-02-28 00:42:32] 2026-02-27 23:42:00,890 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 00:42:32] 2026-02-27 23:42:00,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 00:42:32] 2026-02-27 23:42:00,891 | INFO     | did not find any defunct processes belonging to 294484
[2026-02-28 00:42:32] 2026-02-27 23:42:00,892 | INFO     | did not find any defunct processes belonging to 294484
[2026-02-28 00:42:32] 2026-02-27 23:42:00,892 | INFO     | ready for new job
[2026-02-28 00:42:32] 2026-02-27 23:42:00,892 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 00:42:32] 2026-02-27 23:42:00,892 | INFO     | **************************************
[2026-02-28 00:42:32] 2026-02-27 23:42:00,892 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 00:42:32] 2026-02-27 23:42:00,892 | INFO     | **************************************
[2026-02-28 00:42:32] 2026-02-27 23:42:00,892 | INFO     | 
[2026-02-28 00:42:32] 2026-02-27 23:42:00,893 | INFO     | architecture information:
[2026-02-28 00:42:32] 2026-02-27 23:42:00,893 | INFO     | executing command: cat /etc/os-release
[2026-02-28 00:42:32] 2026-02-27 23:42:00,901 | INFO     | cat /etc/os-release:
[2026-02-28 00:42:32] NAME="CentOS Linux"
[2026-02-28 00:42:32] VERSION="7 (Core)"
[2026-02-28 00:42:32] ID="centos"
[2026-02-28 00:42:32] ID_LIKE="rhel fedora"
[2026-02-28 00:42:32] VERSION_ID="7"
[2026-02-28 00:42:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 00:42:32] ANSI_COLOR="0;31"
[2026-02-28 00:42:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 00:42:32] HOME_URL="https://www.centos.org/"
[2026-02-28 00:42:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 00:42:32] 
[2026-02-28 00:42:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 00:42:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 00:42:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 00:42:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 00:42:32] 
[2026-02-28 00:42:32] 2026-02-27 23:42:00,901 | INFO     | **************************************
[2026-02-28 00:42:32] 2026-02-27 23:42:01,404 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-28 00:42:32] 2026-02-27 23:42:01,417 | INFO     | sufficient remaining disk space (185152307200 B)
[2026-02-28 00:42:32] 2026-02-27 23:42:01,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 00:42:32] 2026-02-27 23:42:01,417 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 00:42:32] 2026-02-27 23:42:01,418 | INFO     | update_server=False
[2026-02-28 00:42:32] 2026-02-27 23:42:01,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 00:42:32] 2026-02-27 23:42:01,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 00:42:32] 2026-02-27 23:42:01,418 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 00:42:32] 2026-02-27 23:42:01,836 | INFO     | all data control threads have been joined
[2026-02-28 00:42:32] 2026-02-27 23:42:01,888 | INFO     | all payload control threads have been joined
[2026-02-28 00:42:32] 2026-02-27 23:42:01,926 | WARNING  | process 294484 can no longer be monitored (due to stat problems) - aborting
[2026-02-28 00:42:32] 2026-02-27 23:42:01,947 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-28 00:42:32] 2026-02-27 23:42:01,972 | INFO     | number of running child processes to parent process 294484: 1
[2026-02-28 00:42:32] 2026-02-27 23:42:01,972 | INFO     | maximum number of monitored processes: 6
[2026-02-28 00:42:32] 2026-02-27 23:42:01,972 | INFO     | aborting job monitoring since job object (job id=7031064118) has expired
[2026-02-28 00:42:32] 2026-02-27 23:42:01,972 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 00:42:32] 2026-02-27 23:42:01,972 | INFO     | will abort loop
[2026-02-28 00:42:32] 2026-02-27 23:42:02,419 | INFO     | [job] queue monitor thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:02,423 | INFO     | [job] retrieve thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:02,522 | INFO     | job.realtimelogging is not enabled
[2026-02-28 00:42:32] 2026-02-27 23:42:02,615 | INFO     | [payload] validate_post thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:02,752 | INFO     | all job control threads have been joined
[2026-02-28 00:42:32] 2026-02-27 23:42:02,842 | INFO     | [data] control thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:02,889 | INFO     | [payload] control thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:02,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 00:42:32] 2026-02-27 23:42:02,978 | INFO     | [job] job monitor thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:03,387 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:03,459 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:03,460 | INFO     | [data] copytool_in thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:03,481 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:03,528 | INFO     | [job] validate thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:03,529 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:03,711 | INFO     | [payload] failed_post thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:03,758 | INFO     | [job] control thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:04,906 | INFO     | [data] copytool_out thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:05,424 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 00:42:32] 2026-02-27 23:42:25,875 | INFO     | [monitor] cgroup control has ended
[2026-02-28 00:42:32] 2026-02-27 23:42:26,522 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140236780775232)>', '<ExcThread(monitor, started 140235841201920)>']
[2026-02-28 00:42:32] 2026-02-27 23:42:31,531 | INFO     | all workflow threads have been joined
[2026-02-28 00:42:32] 2026-02-27 23:42:31,531 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 00:42:32] 2026-02-27 23:42:31,532 | INFO     | traces error code: 0
[2026-02-28 00:42:32] 2026-02-27 23:42:31,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 00:42:32] 2026-02-27 23:42:32,025 | INFO     | PID=290071 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-28 00:42:32] 2026-02-27 23:42:32,026 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 00:42:32] 2026-02-27 23:42:32,026 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 00:42:32] 2026-02-27 23:42:32,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 00:42:32] 2026-02-27 23:42:32,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 00:42:32] 2026-02-27 23:42:32,026 | INFO     | [monitor] control thread has ended
[2026-02-28 00:42:32] 2026-02-27 23:42:32,063 [wrapper] ==== pilot stdout END ====
[2026-02-28 00:42:32] 2026-02-27 23:42:32,066 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 00:42:32] 2026-02-27 23:42:32,068 [wrapper] pilotpid: 290071
[2026-02-28 00:42:32] 2026-02-27 23:42:32,070 [wrapper] Pilot exit status: 0
[2026-02-28 00:42:32] 2026-02-27 23:42:32,077 [wrapper] pandaids: 7031064118
[2026-02-28 00:42:32] 2026-02-27 23:42:32,090 [wrapper] cleanup supervisor_pilot  300035 290072
[2026-02-28 00:42:32] 2026-02-27 23:42:32,092 [wrapper] Test setup, not cleaning
[2026-02-28 00:42:32] 2026-02-27 23:42:32,094 [wrapper] apfmon messages muted
[2026-02-28 00:42:32] 2026-02-27 23:42:32,096 [wrapper] ==== wrapper stdout END ====
[2026-02-28 00:42:32] 2026-02-27 23:42:32,098 [wrapper] ==== wrapper stderr END ====
[2026-02-28 00:42:32]  *** Error codes and diagnostics ***
[2026-02-28 00:42:32]     "exeErrorCode": 0,
[2026-02-28 00:42:32]     "exeErrorDiag": "",
[2026-02-28 00:42:32]     "pilotErrorCode": 0,
[2026-02-28 00:42:32]     "pilotErrorDiag": "",
[2026-02-28 00:42:32]  *** Listing of results directory ***
[2026-02-28 00:42:32] total 360308
[2026-02-28 00:42:32] -rwx------ 1 boinc boinc     36322 Feb 26 22:48 runpilot2-wrapper.sh
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc      5111 Feb 26 22:49 queuedata.json
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc    584627 Feb 26 22:50 pilot3.tar.gz
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc       100 Feb 27 22:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 00:42:32] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 22:52 run_atlas
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc       105 Feb 27 22:52 job.xml
[2026-02-28 00:42:32] -rw-r--r-- 2 boinc boinc 206446008 Feb 27 22:52 EVNT.48447912._000003.pool.root.1
[2026-02-28 00:42:32] -rw-r--r-- 2 boinc boinc    597963 Feb 27 22:52 input.tar.gz
[2026-02-28 00:42:32] -rw-r--r-- 2 boinc boinc     15845 Feb 27 22:52 start_atlas.sh
[2026-02-28 00:42:32] drwxrwx--x 2 boinc boinc      4096 Feb 27 22:52 shared
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc         0 Feb 27 22:52 boinc_setup_complete
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc      6209 Feb 27 22:52 init_data.xml
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc         0 Feb 27 22:52 boinc_lockfile
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc      2612 Feb 27 22:52 pandaJob.out
[2026-02-28 00:42:32] -rw------- 1 boinc boinc    998790 Feb 27 22:53 agis_schedconf.cvmfs.json
[2026-02-28 00:42:32] -rw------- 1 boinc boinc   1513015 Feb 27 22:53 agis_ddmendpoints.agis.ALL.json
[2026-02-28 00:42:32] -rw------- 1 boinc boinc       421 Feb 27 22:53 workernode_map.json
[2026-02-28 00:42:32] drwx------ 5 boinc boinc      4096 Feb 27 22:53 pilot3
[2026-02-28 00:42:32] -rw------- 1 boinc boinc 156224158 Feb 28 00:41 HITS.48842395._000052.pool.root.1
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc       530 Feb 28 00:41 boinc_task_state.xml
[2026-02-28 00:42:32] -rw------- 1 boinc boinc        95 Feb 28 00:41 pilot_heartbeat.json
[2026-02-28 00:42:32] -rw------- 1 boinc boinc      1013 Feb 28 00:41 memory_monitor_summary.json
[2026-02-28 00:42:32] -rw------- 1 boinc boinc    246824 Feb 28 00:41 log.48842395._000052.job.log.tgz.1
[2026-02-28 00:42:32] -rw------- 1 boinc boinc      6287 Feb 28 00:41 heartbeat.json
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc        27 Feb 28 00:42 wrapper_checkpoint.txt
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc      8192 Feb 28 00:42 boinc_mmap_file
[2026-02-28 00:42:32] -rw------- 1 boinc boinc       746 Feb 28 00:42 pilotlog.txt
[2026-02-28 00:42:32] -rw------- 1 boinc boinc    941741 Feb 28 00:42 log.48842395._000052.job.log.1
[2026-02-28 00:42:32] -rw------- 1 boinc boinc       357 Feb 28 00:42 output.list
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc       620 Feb 28 00:42 runtime_log
[2026-02-28 00:42:32] -rw------- 1 boinc boinc   1208320 Feb 28 00:42 result.tar.gz
[2026-02-28 00:42:32] -rw------- 1 boinc boinc       661 Feb 28 00:42 sybKDmDPyF9n9Rq4apOajLDm4fhM0noT9bVooX4SDm801KDm4Qb4mm.diag
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc      8916 Feb 28 00:42 runtime_log.err
[2026-02-28 00:42:32] -rw-r--r-- 1 boinc boinc     11320 Feb 28 00:42 stderr.txt
[2026-02-28 00:42:32] HITS file was successfully produced:
[2026-02-28 00:42:32] -rw------- 1 boinc boinc 156224158 Feb 28 00:41 shared/HITS.pool.root.1
[2026-02-28 00:42:32]  *** Contents of shared directory: ***
[2026-02-28 00:42:32] total 355956
[2026-02-28 00:42:32] -rw-r--r-- 2 boinc boinc 206446008 Feb 27 22:52 ATLAS.root_0
[2026-02-28 00:42:32] -rw-r--r-- 2 boinc boinc    597963 Feb 27 22:52 input.tar.gz
[2026-02-28 00:42:32] -rw-r--r-- 2 boinc boinc     15845 Feb 27 22:52 start_atlas.sh
[2026-02-28 00:42:32] -rw------- 1 boinc boinc 156224158 Feb 28 00:41 HITS.pool.root.1
[2026-02-28 00:42:32] -rw------- 1 boinc boinc   1208320 Feb 28 00:42 result.tar.gz
00:42:33 (286042): run_atlas exited; CPU time 12632.332004
00:42:33 (286042): called boinc_finish(0)

</stderr_txt>
]]>

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