Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:32:13 (2411423): wrapper (7.7.26015): starting
03:32:13 (2411423): wrapper: running run_atlas (--nthreads 4)
[2026-02-27 03:32:13] Arguments: --nthreads 4
[2026-02-27 03:32:13] Threads: 4
[2026-02-27 03:32:13] Checking for CVMFS
[2026-02-27 03:32:13] No cvmfs_config command found, will try listing directly
[2026-02-27 03:32:13] CVMFS is ok
[2026-02-27 03:32:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 03:32:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 03:32:13] Further information can be found at the LHC@home message board.
[2026-02-27 03:32:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 03:32:13] Checking for apptainer binary...
[2026-02-27 03:32:13] which: no apptainer in ((null))
[2026-02-27 03:32:13] apptainer is not installed, using version from CVMFS
[2026-02-27 03:32:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 03:32:13] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-02-27 03:32:13] apptainer works
[2026-02-27 03:32:13] Set ATHENA_PROC_NUMBER=4
[2026-02-27 03:32:13] Set ATHENA_CORE_NUMBER=4
[2026-02-27 03:32:13] Starting ATLAS job with PandaID=7030659294
[2026-02-27 03:32:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 06:42:56]  *** The last 200 lines of the pilot log: ***
[2026-02-27 06:42:56] 2026-02-27 05:36:53,865 | INFO     | job 7030659294 has state=finished
[2026-02-27 06:42:56] 2026-02-27 05:36:53,865 | INFO     | preparing for final server update for job 7030659294 in state='finished'
[2026-02-27 06:42:56] 2026-02-27 05:36:53,866 | INFO     | reading metadata from: /scratch/boinc/var/slot88/slots/0/PanDA_Pilot-7030659294/jobReport.json
[2026-02-27 06:42:56] 2026-02-27 05:36:53,868 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot88/slots/0/workernode_map.json
[2026-02-27 06:42:56] 2026-02-27 05:36:53,868 | INFO     | this job has now completed (state=finished)
[2026-02-27 06:42:56] 2026-02-27 05:36:53,868 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-27 06:42:56] 2026-02-27 05:36:53,868 | INFO     | log transfer has been attempted: DONE
[2026-02-27 06:42:56] 2026-02-27 05:36:53,869 | INFO     | job 7030659294 has finished - writing final server update
[2026-02-27 06:42:56] 2026-02-27 05:36:53,869 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3274088/.job.ad'
[2026-02-27 06:42:56] 2026-02-27 05:36:53,869 | INFO     | total number of processed events: 400 (read)
[2026-02-27 06:42:56] 2026-02-27 05:36:53,893 | INFO     | using path: /scratch/boinc/var/slot88/slots/0/PanDA_Pilot-7030659294/memory_monitor_summary.json (trf name=prmon)
[2026-02-27 06:42:56] 2026-02-27 05:36:53,894 | INFO     | extracted standard info from prmon json
[2026-02-27 06:42:56] 2026-02-27 05:36:53,894 | INFO     | extracted standard memory fields from prmon json
[2026-02-27 06:42:56] 2026-02-27 05:36:53,894 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-27 06:42:56] 2026-02-27 05:36:53,894 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-27 06:42:56] 2026-02-27 05:36:53,894 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-27 06:42:56] 2026-02-27 05:36:53,898 | INFO     | fitting pss+swap vs Time
[2026-02-27 06:42:56] 2026-02-27 05:36:53,898 | INFO     | sum of square deviations: 1838657730.0
[2026-02-27 06:42:56] 2026-02-27 05:36:53,899 | INFO     | sum of deviations: 9094548865.0
[2026-02-27 06:42:56] 2026-02-27 05:36:53,899 | INFO     | mean x: 1772165073.0
[2026-02-27 06:42:56] 2026-02-27 05:36:53,899 | INFO     | mean y: 2341187.1049723756
[2026-02-27 06:42:56] 2026-02-27 05:36:53,900 | INFO     | intersect: -8763315188.344954
[2026-02-27 06:42:56] 2026-02-27 05:36:53,900 | INFO     | chi2: 1.2866551516390246
[2026-02-27 06:42:56] 2026-02-27 05:36:53,900 | INFO     | sum of square deviations: 1690450300.0
[2026-02-27 06:42:56] 2026-02-27 05:36:53,901 | INFO     | sum of deviations: 8849272927.999998
[2026-02-27 06:42:56] 2026-02-27 05:36:53,901 | INFO     | mean x: 1772164920.5
[2026-02-27 06:42:56] 2026-02-27 05:36:53,901 | INFO     | mean y: 2340934.6704545454
[2026-02-27 06:42:56] 2026-02-27 05:36:53,902 | INFO     | intersect: -9274696701.355827
[2026-02-27 06:42:56] 2026-02-27 05:36:53,902 | INFO     | chi2: 1.2874419548517364
[2026-02-27 06:42:56] 2026-02-27 05:36:53,902 | INFO     | current chi2=1.2874419548517364 (change=-0.06115105603156913 %)
[2026-02-27 06:42:56] 2026-02-27 05:36:53,902 | INFO     | right removable region: 175
[2026-02-27 06:42:56] 2026-02-27 05:36:53,902 | INFO     | sum of square deviations: 1690450300.0
[2026-02-27 06:42:56] 2026-02-27 05:36:53,904 | INFO     | sum of deviations: -12102707531.499996
[2026-02-27 06:42:56] 2026-02-27 05:36:53,904 | INFO     | mean x: 1772165225.5
[2026-02-27 06:42:56] 2026-02-27 05:36:53,904 | INFO     | mean y: 2362645.3238636362
[2026-02-27 06:42:56] 2026-02-27 05:36:53,904 | INFO     | intersect: 12690104734.94415
[2026-02-27 06:42:56] 2026-02-27 05:36:53,904 | INFO     | chi2: 0.024871166621657715
[2026-02-27 06:42:56] 2026-02-27 05:36:53,904 | INFO     | current chi2=0.024871166621657715 (change=98.06699047604363 %)
[2026-02-27 06:42:56] 2026-02-27 05:36:53,905 | INFO     | sum of square deviations: 1550429070.0
[2026-02-27 06:42:56] 2026-02-27 05:36:53,906 | INFO     | sum of deviations: -10469755130.000002
[2026-02-27 06:42:56] 2026-02-27 05:36:53,906 | INFO     | mean x: 1772165378.0
[2026-02-27 06:42:56] 2026-02-27 05:36:53,906 | INFO     | mean y: 2360861.9532163744
[2026-02-27 06:42:56] 2026-02-27 05:36:53,906 | INFO     | intersect: 11969459464.873434
[2026-02-27 06:42:56] 2026-02-27 05:36:53,906 | INFO     | chi2: 0.024240500181581862
[2026-02-27 06:42:56] 2026-02-27 05:36:53,906 | INFO     | current chi2=0.024240500181581862 (change=2.5357332435168956 %)
[2026-02-27 06:42:56] 2026-02-27 05:36:53,906 | INFO     | left removable region: 20
[2026-02-27 06:42:56] 2026-02-27 05:36:53,907 | INFO     | sum of square deviations: 1154663510.0
[2026-02-27 06:42:56] 2026-02-27 05:36:53,908 | INFO     | sum of deviations: -5603129623.999998
[2026-02-27 06:42:56] 2026-02-27 05:36:53,908 | INFO     | mean x: 1772165500.0
[2026-02-27 06:42:56] 2026-02-27 05:36:53,908 | INFO     | mean y: 2355441.7741935486
[2026-02-27 06:42:56] 2026-02-27 05:36:53,908 | INFO     | intersect: 8601980289.779278
[2026-02-27 06:42:56] 2026-02-27 05:36:53,908 | INFO     | chi2: 0.016480316760543616
[2026-02-27 06:42:56] 2026-02-27 05:36:53,908 | INFO     | current memory leak: -4.85 B/s (using 155 data points, chi2=0.02)
[2026-02-27 06:42:56] 2026-02-27 05:36:53,909 | INFO     | could have reported an average CPU frequency of 2711 MHz (10 samples)
[2026-02-27 06:42:56] 2026-02-27 05:36:53,909 | INFO     | ..............................
[2026-02-27 06:42:56] 2026-02-27 05:36:53,909 | INFO     | . Timing measurements:
[2026-02-27 06:42:56] 2026-02-27 05:36:53,909 | INFO     | . get job = 0 s
[2026-02-27 06:42:56] 2026-02-27 05:36:53,909 | INFO     | . initial setup = 8 s
[2026-02-27 06:42:56] 2026-02-27 05:36:53,909 | INFO     | . payload setup = 8 s
[2026-02-27 06:42:56] 2026-02-27 05:36:53,909 | INFO     | . stage-in = 0 s
[2026-02-27 06:42:56] 2026-02-27 05:36:53,909 | INFO     | . payload execution = 11027 s
[2026-02-27 06:42:56] 2026-02-27 05:36:53,909 | INFO     | . stage-out = 0 s
[2026-02-27 06:42:56] 2026-02-27 05:36:53,910 | INFO     | . log creation = 0 s
[2026-02-27 06:42:56] 2026-02-27 05:36:53,910 | INFO     | ..............................
[2026-02-27 06:42:56] 2026-02-27 05:36:53,999 | INFO     | 
[2026-02-27 06:42:56] 2026-02-27 05:36:53,999 | INFO     | job summary report
[2026-02-27 06:42:56] 2026-02-27 05:36:53,999 | INFO     | --------------------------------------------------
[2026-02-27 06:42:56] 2026-02-27 05:36:53,999 | INFO     | PanDA job id: 7030659294
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | task id: 48838447
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | errors: (none)
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | pilot state: finished 
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | transexitcode: 0
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | exeerrorcode: 0
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | exeerrordiag: 
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | exitcode: 0
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | exitmsg: OK
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | cpuconsumptiontime: 42239 s
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | nevents: 400
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | neventsw: 0
[2026-02-27 06:42:56] 2026-02-27 05:36:54,000 | INFO     | pid: 2437139
[2026-02-27 06:42:56] 2026-02-27 05:36:54,001 | INFO     | pgrp: 2437139
[2026-02-27 06:42:56] 2026-02-27 05:36:54,001 | INFO     | corecount: 4
[2026-02-27 06:42:56] 2026-02-27 05:36:54,001 | INFO     | event service: False
[2026-02-27 06:42:56] 2026-02-27 05:36:54,001 | INFO     | sizes: {0: 2282032, 1: 2282322, 11: 2282322, 11040: 2312101, 11043: 2321121, 11046: 2321177, 11048: 2321499}
[2026-02-27 06:42:56] 2026-02-27 05:36:54,001 | INFO     | --------------------------------------------------
[2026-02-27 06:42:56] 2026-02-27 05:36:54,001 | INFO     | 
[2026-02-27 06:42:56] 2026-02-27 05:36:54,001 | INFO     | executing command: ls -lF /scratch/boinc/var/slot88/slots/0
[2026-02-27 06:42:56] 2026-02-27 05:36:54,035 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,037 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,037 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,037 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,037 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,037 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 06:42:56] 2026-02-27 05:36:54,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,037 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 06:42:56] 2026-02-27 05:36:54,037 | INFO     | job 7030659294 has completed (purged errors)
[2026-02-27 06:42:56] 2026-02-27 05:36:54,037 | INFO     | overall cleanup function is called
[2026-02-27 06:42:56] 2026-02-27 05:36:55,045 | INFO     | --- collectZombieJob: --- 10, [2437139]
[2026-02-27 06:42:56] 2026-02-27 05:36:55,046 | INFO     | zombie collector waiting for pid 2437139
[2026-02-27 06:42:56] 2026-02-27 05:36:55,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 06:42:56] 2026-02-27 05:36:55,046 | INFO     | collected zombie processes
[2026-02-27 06:42:56] 2026-02-27 05:36:55,046 | INFO     | will attempt to kill all subprocesses of pid=2437139
[2026-02-27 06:42:56] 2026-02-27 05:36:55,828 | INFO     | process IDs to be killed: [2437139] (in reverse order)
[2026-02-27 06:42:56] 2026-02-27 05:36:56,137 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 06:42:56] 2026-02-27 05:36:56,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 06:42:56] 2026-02-27 05:36:56,167 | INFO     | did not find any defunct processes belonging to 2437139
[2026-02-27 06:42:56] 2026-02-27 05:36:56,193 | INFO     | did not find any defunct processes belonging to 2437139
[2026-02-27 06:42:56] 2026-02-27 05:36:56,193 | INFO     | ready for new job
[2026-02-27 06:42:56] 2026-02-27 05:36:56,193 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 06:42:56] 2026-02-27 05:36:56,196 | INFO     | **************************************
[2026-02-27 06:42:56] 2026-02-27 05:36:56,196 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 06:42:56] 2026-02-27 05:36:56,196 | INFO     | **************************************
[2026-02-27 06:42:56] 2026-02-27 05:36:56,196 | INFO     | 
[2026-02-27 06:42:56] 2026-02-27 05:36:56,205 | INFO     | architecture information:
[2026-02-27 06:42:56] 2026-02-27 05:36:56,205 | INFO     | executing command: cat /etc/os-release
[2026-02-27 06:42:56] 2026-02-27 05:36:56,225 | INFO     | cat /etc/os-release:
[2026-02-27 06:42:56] NAME="CentOS Linux"
[2026-02-27 06:42:56] VERSION="7 (Core)"
[2026-02-27 06:42:56] ID="centos"
[2026-02-27 06:42:56] ID_LIKE="rhel fedora"
[2026-02-27 06:42:56] VERSION_ID="7"
[2026-02-27 06:42:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 06:42:56] ANSI_COLOR="0;31"
[2026-02-27 06:42:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 06:42:56] HOME_URL="https://www.centos.org/"
[2026-02-27 06:42:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 06:42:56] 
[2026-02-27 06:42:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 06:42:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 06:42:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 06:42:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 06:42:56] 
[2026-02-27 06:42:56] 2026-02-27 05:36:56,226 | INFO     | **************************************
[2026-02-27 06:42:56] 2026-02-27 05:36:56,729 | INFO     | executing command: df -mP /scratch/boinc/var/slot88/slots/0
[2026-02-27 06:42:56] 2026-02-27 05:36:56,752 | INFO     | sufficient remaining disk space (3305730211840 B)
[2026-02-27 06:42:56] 2026-02-27 05:36:56,752 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 06:42:56] 2026-02-27 05:36:56,752 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 06:42:56] 2026-02-27 05:36:56,753 | INFO     | update_server=False
[2026-02-27 06:42:56] 2026-02-27 05:36:56,753 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 06:42:56] 2026-02-27 05:36:57,065 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 06:42:56] 2026-02-27 05:36:57,069 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 06:42:56] 2026-02-27 05:36:57,069 | INFO     | aborting loop
[2026-02-27 06:42:56] 2026-02-27 05:36:57,222 | INFO     | all data control threads have been joined
[2026-02-27 06:42:56] 2026-02-27 05:36:57,609 | INFO     | all job control threads have been joined
[2026-02-27 06:42:56] 2026-02-27 05:36:57,758 | INFO     | [job] retrieve thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:58,074 | INFO     | [job] job monitor thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:58,196 | INFO     | all payload control threads have been joined
[2026-02-27 06:42:56] 2026-02-27 05:36:58,227 | INFO     | [data] control thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:58,263 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:58,264 | INFO     | [payload] failed_post thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:58,615 | INFO     | [job] control thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:58,645 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 06:42:56] 2026-02-27 05:36:58,754 | INFO     | [data] copytool_in thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:58,852 | INFO     | [payload] validate_post thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:58,999 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:59,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 06:42:56] 2026-02-27 05:36:59,051 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:59,070 | INFO     | [data] copytool_out thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:59,143 | INFO     | [job] validate thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:36:59,202 | INFO     | [payload] control thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:37:00,015 | INFO     | [job] queue monitor thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:37:02,651 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:37:07,174 | INFO     | job.realtimelogging is not enabled
[2026-02-27 06:42:56] 2026-02-27 05:37:08,180 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 06:42:56] 2026-02-27 05:37:26,432 | INFO     | PID=2421779 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-27 06:42:56] 2026-02-27 05:37:26,432 | INFO     | .. there are 18 such processes running
[2026-02-27 06:42:56] 2026-02-27 05:37:26,433 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 06:42:56] 2026-02-27 05:37:26,433 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 06:42:56] 2026-02-27 05:37:26,433 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 06:42:56] 2026-02-27 05:37:52,881 | INFO     | [monitor] cgroup control has ended
[2026-02-27 06:42:56] 2026-02-27 05:37:54,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23048213927744)>', '<ExcThread(monitor, started 23047974430464)>']
[2026-02-27 06:42:56] 2026-02-27 05:37:55,571 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 06:42:56] 2026-02-27 05:37:55,571 | INFO     | [monitor] control thread has ended
[2026-02-27 06:42:56] 2026-02-27 05:37:59,785 | INFO     | all workflow threads have been joined
[2026-02-27 06:42:56] 2026-02-27 05:37:59,786 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 06:42:56] 2026-02-27 05:37:59,786 | INFO     | traces error code: 0
[2026-02-27 06:42:56] 2026-02-27 05:37:59,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 06:42:56] 2026-02-27 05:37:59,902 [wrapper] ==== pilot stdout END ====
[2026-02-27 06:42:56] 2026-02-27 05:37:59,906 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 06:42:56] 2026-02-27 05:37:59,909 [wrapper] pilotpid: 2421779
[2026-02-27 06:42:56] 2026-02-27 05:37:59,913 [wrapper] Pilot exit status: 0
[2026-02-27 06:42:56] 2026-02-27 05:37:59,925 [wrapper] pandaids: 7030659294
[2026-02-27 06:42:56] 2026-02-27 05:38:00,108 [wrapper] cleanup supervisor_pilot 2719118 2421780
[2026-02-27 06:42:56] 2026-02-27 05:38:00,112 [wrapper] Test setup, not cleaning
[2026-02-27 06:42:56] 2026-02-27 05:38:00,116 [wrapper] apfmon messages muted
[2026-02-27 06:42:56] 2026-02-27 05:38:00,120 [wrapper] ==== wrapper stdout END ====
[2026-02-27 06:42:56] 2026-02-27 05:38:00,123 [wrapper] ==== wrapper stderr END ====
[2026-02-27 06:42:56]  *** Error codes and diagnostics ***
[2026-02-27 06:42:56]     "exeErrorCode": 0,
[2026-02-27 06:42:56]     "exeErrorDiag": "",
[2026-02-27 06:42:56]     "pilotErrorCode": 0,
[2026-02-27 06:42:56]     "pilotErrorDiag": "",
[2026-02-27 06:42:56]  *** Listing of results directory ***
[2026-02-27 06:42:56] total 494988
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc    584627 Feb 26 13:16 pilot3.tar.gz
[2026-02-27 06:42:56] -rwx------ 1 boinc boinc     36322 Feb 26 13:20 runpilot2-wrapper.sh
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc      5111 Feb 26 13:21 queuedata.json
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc       100 Feb 27 03:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 06:42:56] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 03:32 run_atlas
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc       105 Feb 27 03:32 job.xml
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc      6697 Feb 27 03:32 init_data.xml
[2026-02-27 06:42:56] -rw-r--r-- 2 boinc boinc 282650054 Feb 27 03:32 EVNT.48220117._000048.pool.root.1
[2026-02-27 06:42:56] -rw-r--r-- 2 boinc boinc     15845 Feb 27 03:32 start_atlas.sh
[2026-02-27 06:42:56] drwxrwx--x 2 boinc boinc      4096 Feb 27 03:32 shared
[2026-02-27 06:42:56] -rw-r--r-- 2 boinc boinc    597970 Feb 27 03:32 input.tar.gz
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc         0 Feb 27 03:32 boinc_lockfile
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc      2572 Feb 27 03:32 pandaJob.out
[2026-02-27 06:42:56] -rw------- 1 boinc boinc    998489 Feb 27 03:32 agis_schedconf.cvmfs.json
[2026-02-27 06:42:56] -rw------- 1 boinc boinc       443 Feb 27 03:32 workernode_map.json
[2026-02-27 06:42:56] drwx------ 5 boinc boinc      4096 Feb 27 03:32 pilot3
[2026-02-27 06:42:56] -rw------- 1 boinc boinc 216488281 Feb 27 06:36 HITS.48838447._001136.pool.root.1
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc       528 Feb 27 06:36 boinc_task_state.xml
[2026-02-27 06:42:56] -rw------- 1 boinc boinc      1026 Feb 27 06:36 memory_monitor_summary.json
[2026-02-27 06:42:56] -rw------- 1 boinc boinc   1513015 Feb 27 06:36 agis_ddmendpoints.agis.ALL.json
[2026-02-27 06:42:56] -rw------- 1 boinc boinc    354631 Feb 27 06:36 log.48838447._001136.job.log.tgz.1
[2026-02-27 06:42:56] -rw------- 1 boinc boinc      6345 Feb 27 06:36 heartbeat.json
[2026-02-27 06:42:56] -rw------- 1 boinc boinc        95 Feb 27 06:37 pilot_heartbeat.json
[2026-02-27 06:42:56] -rw------- 1 boinc boinc      4903 Feb 27 06:37 pilotlog.txt
[2026-02-27 06:42:56] -rw------- 1 boinc boinc   1544693 Feb 27 06:38 log.48838447._001136.job.log.1
[2026-02-27 06:42:56] -rw------- 1 boinc boinc       357 Feb 27 06:38 output.list
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc       620 Feb 27 06:38 runtime_log
[2026-02-27 06:42:56] -rw------- 1 boinc boinc   1914880 Feb 27 06:38 result.tar.gz
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc      9205 Feb 27 06:38 runtime_log.err
[2026-02-27 06:42:56] -rw------- 1 boinc boinc       666 Feb 27 06:38 bPdMDmgWpF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmMA1KDmTBLkqm.diag
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc        26 Feb 27 06:42 wrapper_checkpoint.txt
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc      8192 Feb 27 06:42 boinc_mmap_file
[2026-02-27 06:42:56] -rw-r--r-- 1 boinc boinc     21124 Feb 27 06:42 stderr.txt
[2026-02-27 06:42:56] HITS file was successfully produced:
[2026-02-27 06:42:56] -rw------- 1 boinc boinc 216488281 Feb 27 06:36 shared/HITS.pool.root.1
[2026-02-27 06:42:56]  *** Contents of shared directory: ***
[2026-02-27 06:42:56] total 489924
[2026-02-27 06:42:56] -rw-r--r-- 2 boinc boinc 282650054 Feb 27 03:32 ATLAS.root_0
[2026-02-27 06:42:56] -rw-r--r-- 2 boinc boinc     15845 Feb 27 03:32 start_atlas.sh
[2026-02-27 06:42:56] -rw-r--r-- 2 boinc boinc    597970 Feb 27 03:32 input.tar.gz
[2026-02-27 06:42:56] -rw------- 1 boinc boinc 216488281 Feb 27 06:36 HITS.pool.root.1
[2026-02-27 06:42:56] -rw------- 1 boinc boinc   1914880 Feb 27 06:38 result.tar.gz
06:42:57 (2411423): run_atlas exited; CPU time 42914.614168
06:42:57 (2411423): called boinc_finish(0)

</stderr_txt>
]]>

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