Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:42:40 (428613): wrapper (7.7.26015): starting
05:42:40 (428613): wrapper: running run_atlas (--nthreads 4)
[2026-02-27 05:42:40] Arguments: --nthreads 4
[2026-02-27 05:42:40] Threads: 4
[2026-02-27 05:42:40] Checking for CVMFS
[2026-02-27 05:42:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 05:42:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 05:42:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 05:42:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 05:42:40] 2.9.2.0 56696 2246 91508 156682 2 49 24702016 36864000 0 130560 0 1040361 99.979 100041 13365 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 05:42:40] CVMFS is ok
[2026-02-27 05:42:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 05:42:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 05:42:40] Further information can be found at the LHC@home message board.
[2026-02-27 05:42:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 05:42:40] Checking for apptainer binary...
[2026-02-27 05:42:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 05:42:40] Running /usr/bin/apptainer --version
[2026-02-27 05:42:40] apptainer version 1.4.1-1.1
[2026-02-27 05:42:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 05:42:40] thA381
[2026-02-27 05:42:40] apptainer works
[2026-02-27 05:42:40] Set ATHENA_PROC_NUMBER=4
[2026-02-27 05:42:40] Set ATHENA_CORE_NUMBER=4
[2026-02-27 05:42:40] Starting ATLAS job with PandaID=7030646972
[2026-02-27 05:42:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 07:22:21]  *** The last 200 lines of the pilot log: ***
[2026-02-27 07:22:21] 2026-02-27 06:21:48,536 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 07:22:21] 2026-02-27 06:21:48,536 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 07:22:21] 2026-02-27 06:21:48,536 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 07:22:21] 2026-02-27 06:21:48,536 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 07:22:21] 2026-02-27 06:21:48,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 07:22:21] 2026-02-27 06:21:48,536 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 07:22:21] 2026-02-27 06:21:48,537 | INFO     | job 7030646972 has completed (purged errors)
[2026-02-27 07:22:21] 2026-02-27 06:21:48,537 | INFO     | overall cleanup function is called
[2026-02-27 07:22:21] 2026-02-27 06:21:49,544 | INFO     | --- collectZombieJob: --- 10, [437228]
[2026-02-27 07:22:21] 2026-02-27 06:21:49,544 | INFO     | zombie collector waiting for pid 437228
[2026-02-27 07:22:21] 2026-02-27 06:21:49,544 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 07:22:21] 2026-02-27 06:21:49,544 | INFO     | collected zombie processes
[2026-02-27 07:22:21] 2026-02-27 06:21:49,544 | INFO     | will attempt to kill all subprocesses of pid=437228
[2026-02-27 07:22:21] 2026-02-27 06:21:49,587 | INFO     | process IDs to be killed: [437228] (in reverse order)
[2026-02-27 07:22:21] 2026-02-27 06:21:49,621 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 07:22:21] 2026-02-27 06:21:49,621 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 07:22:21] 2026-02-27 06:21:49,623 | INFO     | did not find any defunct processes belonging to 437228
[2026-02-27 07:22:21] 2026-02-27 06:21:49,624 | INFO     | did not find any defunct processes belonging to 437228
[2026-02-27 07:22:21] 2026-02-27 06:21:49,624 | INFO     | ready for new job
[2026-02-27 07:22:21] 2026-02-27 06:21:49,624 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 07:22:21] 2026-02-27 06:21:49,625 | INFO     | **************************************
[2026-02-27 07:22:21] 2026-02-27 06:21:49,625 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 07:22:21] 2026-02-27 06:21:49,625 | INFO     | **************************************
[2026-02-27 07:22:21] 2026-02-27 06:21:49,625 | INFO     | 
[2026-02-27 07:22:21] 2026-02-27 06:21:49,625 | INFO     | architecture information:
[2026-02-27 07:22:21] 2026-02-27 06:21:49,626 | INFO     | executing command: cat /etc/os-release
[2026-02-27 07:22:21] 2026-02-27 06:21:49,640 | INFO     | cat /etc/os-release:
[2026-02-27 07:22:21] NAME="CentOS Linux"
[2026-02-27 07:22:21] VERSION="7 (Core)"
[2026-02-27 07:22:21] ID="centos"
[2026-02-27 07:22:21] ID_LIKE="rhel fedora"
[2026-02-27 07:22:21] VERSION_ID="7"
[2026-02-27 07:22:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 07:22:21] ANSI_COLOR="0;31"
[2026-02-27 07:22:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 07:22:21] HOME_URL="https://www.centos.org/"
[2026-02-27 07:22:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 07:22:21] 
[2026-02-27 07:22:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 07:22:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 07:22:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 07:22:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 07:22:21] 
[2026-02-27 07:22:21] 2026-02-27 06:21:49,640 | INFO     | **************************************
[2026-02-27 07:22:21] 2026-02-27 06:21:50,144 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-27 07:22:21] 2026-02-27 06:21:50,162 | INFO     | sufficient remaining disk space (234034823168 B)
[2026-02-27 07:22:21] 2026-02-27 06:21:50,163 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 07:22:21] 2026-02-27 06:21:50,163 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 07:22:21] 2026-02-27 06:21:50,163 | INFO     | update_server=False
[2026-02-27 07:22:21] 2026-02-27 06:21:50,163 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 07:22:21] 2026-02-27 06:21:50,163 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 07:22:21] 2026-02-27 06:21:50,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 07:22:21] 2026-02-27 06:21:50,752 | INFO     | all payload control threads have been joined
[2026-02-27 07:22:21] 2026-02-27 06:21:50,782 | WARNING  | process 437228 can no longer be monitored (due to stat problems) - aborting
[2026-02-27 07:22:21] 2026-02-27 06:21:50,814 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-27 07:22:21] 2026-02-27 06:21:50,853 | INFO     | number of running child processes to parent process 437228: 1
[2026-02-27 07:22:21] 2026-02-27 06:21:50,854 | INFO     | maximum number of monitored processes: 6
[2026-02-27 07:22:21] 2026-02-27 06:21:50,854 | INFO     | aborting job monitoring since job object (job id=7030646972) has expired
[2026-02-27 07:22:21] 2026-02-27 06:21:50,854 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 07:22:21] 2026-02-27 06:21:50,854 | INFO     | will abort loop
[2026-02-27 07:22:21] 2026-02-27 06:21:51,168 | INFO     | [job] queue monitor thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:51,169 | INFO     | [job] retrieve thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:51,175 | INFO     | [data] copytool_in thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:51,181 | INFO     | all data control threads have been joined
[2026-02-27 07:22:21] 2026-02-27 06:21:51,410 | INFO     | [payload] failed_post thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:51,613 | INFO     | all job control threads have been joined
[2026-02-27 07:22:21] 2026-02-27 06:21:51,713 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:51,758 | INFO     | [payload] control thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:51,859 | INFO     | [job] job monitor thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:51,966 | INFO     | [payload] validate_post thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:52,187 | INFO     | [data] control thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:52,235 | INFO     | [data] copytool_out thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:52,366 | INFO     | [job] validate thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:52,504 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:52,572 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:52,595 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:52,619 | INFO     | [job] control thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:21:53,267 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 07:22:21] 2026-02-27 06:21:57,274 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 07:22:21] 2026-02-27 06:22:01,083 | INFO     | [monitor] cgroup control has ended
[2026-02-27 07:22:21] 2026-02-27 06:22:01,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006497339200)>', '<ExcThread(monitor, started 140005120927488)>']
[2026-02-27 07:22:21] 2026-02-27 06:22:06,933 | INFO     | all workflow threads have been joined
[2026-02-27 07:22:21] 2026-02-27 06:22:06,933 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 07:22:21] 2026-02-27 06:22:06,933 | INFO     | traces error code: 0
[2026-02-27 07:22:21] 2026-02-27 06:22:06,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 07:22:21] 2026-02-27 06:22:20,967 | INFO     | PID=432727 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-27 07:22:21] 2026-02-27 06:22:20,968 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 07:22:21] 2026-02-27 06:22:20,968 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 07:22:21] 2026-02-27 06:22:20,968 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 07:22:21] 2026-02-27 06:22:20,968 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 07:22:21] 2026-02-27 06:22:20,968 | INFO     | [monitor] control thread has ended
[2026-02-27 07:22:21] 2026-02-27 06:22:21,042 [wrapper] ==== pilot stdout END ====
[2026-02-27 07:22:21] 2026-02-27 06:22:21,047 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 07:22:21] 2026-02-27 06:22:21,051 [wrapper] pilotpid: 432727
[2026-02-27 07:22:21] 2026-02-27 06:22:21,055 [wrapper] Pilot exit status: 0
[2026-02-27 07:22:21] 2026-02-27 06:22:21,067 [wrapper] pandaids: 7030646972
[2026-02-27 07:22:21] 2026-02-27 06:22:21,089 [wrapper] cleanup supervisor_pilot  442776 432728
[2026-02-27 07:22:21] 2026-02-27 06:22:21,093 [wrapper] Test setup, not cleaning
[2026-02-27 07:22:21] 2026-02-27 06:22:21,097 [wrapper] apfmon messages muted
[2026-02-27 07:22:21] 2026-02-27 06:22:21,102 [wrapper] ==== wrapper stdout END ====
[2026-02-27 07:22:21] 2026-02-27 06:22:21,105 [wrapper] ==== wrapper stderr END ====
[2026-02-27 07:22:21]  *** Error codes and diagnostics ***
[2026-02-27 07:22:21]     "exeErrorCode": 0,
[2026-02-27 07:22:21]     "exeErrorDiag": "",
[2026-02-27 07:22:21]     "pilotErrorCode": 0,
[2026-02-27 07:22:21]     "pilotErrorDiag": "",
[2026-02-27 07:22:21]  *** Listing of results directory ***
[2026-02-27 07:22:21] total 568076
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc    584627 Feb 26 10:18 pilot3.tar.gz
[2026-02-27 07:22:21] -rwx------ 1 boinc boinc     36322 Feb 26 10:19 runpilot2-wrapper.sh
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc      5111 Feb 26 10:20 queuedata.json
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc       100 Feb 27 05:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 07:22:21] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 05:42 run_atlas
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc       105 Feb 27 05:42 job.xml
[2026-02-27 07:22:21] -rw-r--r-- 2 boinc boinc 311782871 Feb 27 05:42 EVNT.48252644._000015.pool.root.1
[2026-02-27 07:22:21] -rw-r--r-- 2 boinc boinc    597943 Feb 27 05:42 input.tar.gz
[2026-02-27 07:22:21] -rw-r--r-- 2 boinc boinc     15845 Feb 27 05:42 start_atlas.sh
[2026-02-27 07:22:21] drwxrwx--x 2 boinc boinc      4096 Feb 27 05:42 shared
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc         0 Feb 27 05:42 boinc_setup_complete
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc      6376 Feb 27 05:42 init_data.xml
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc         0 Feb 27 05:42 boinc_lockfile
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc      2490 Feb 27 05:42 pandaJob.out
[2026-02-27 07:22:21] -rw------- 1 boinc boinc    998489 Feb 27 05:42 agis_schedconf.cvmfs.json
[2026-02-27 07:22:21] -rw------- 1 boinc boinc   1513015 Feb 27 05:42 agis_ddmendpoints.agis.ALL.json
[2026-02-27 07:22:21] -rw------- 1 boinc boinc       427 Feb 27 05:42 workernode_map.json
[2026-02-27 07:22:21] drwx------ 5 boinc boinc      4096 Feb 27 05:42 pilot3
[2026-02-27 07:22:21] -rw------- 1 boinc boinc 263738793 Feb 27 07:21 HITS.48841707._000357.pool.root.1
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc       529 Feb 27 07:21 boinc_task_state.xml
[2026-02-27 07:22:21] -rw------- 1 boinc boinc      1021 Feb 27 07:21 memory_monitor_summary.json
[2026-02-27 07:22:21] -rw------- 1 boinc boinc    276843 Feb 27 07:21 log.48841707._000357.job.log.tgz.1
[2026-02-27 07:22:21] -rw------- 1 boinc boinc      6321 Feb 27 07:21 heartbeat.json
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc      8192 Feb 27 07:21 boinc_mmap_file
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc        27 Feb 27 07:21 wrapper_checkpoint.txt
[2026-02-27 07:22:21] -rw------- 1 boinc boinc       746 Feb 27 07:22 pilotlog.txt
[2026-02-27 07:22:21] -rw------- 1 boinc boinc        95 Feb 27 07:22 pilot_heartbeat.json
[2026-02-27 07:22:21] -rw------- 1 boinc boinc    859291 Feb 27 07:22 log.48841707._000357.job.log.1
[2026-02-27 07:22:21] -rw------- 1 boinc boinc       357 Feb 27 07:22 output.list
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc       620 Feb 27 07:22 runtime_log
[2026-02-27 07:22:21] -rw------- 1 boinc boinc   1157120 Feb 27 07:22 result.tar.gz
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc      8896 Feb 27 07:22 runtime_log.err
[2026-02-27 07:22:21] -rw------- 1 boinc boinc       657 Feb 27 07:22 H3jNDmDimF9n9Rq4apOajLDm4fhM0noT9bVooX4SDm4r0KDmPh8MXm.diag
[2026-02-27 07:22:21] -rw-r--r-- 1 boinc boinc     12035 Feb 27 07:22 stderr.txt
[2026-02-27 07:22:21] HITS file was successfully produced:
[2026-02-27 07:22:21] -rw------- 1 boinc boinc 263738793 Feb 27 07:21 shared/HITS.pool.root.1
[2026-02-27 07:22:21]  *** Contents of shared directory: ***
[2026-02-27 07:22:21] total 563776
[2026-02-27 07:22:21] -rw-r--r-- 2 boinc boinc 311782871 Feb 27 05:42 ATLAS.root_0
[2026-02-27 07:22:21] -rw-r--r-- 2 boinc boinc    597943 Feb 27 05:42 input.tar.gz
[2026-02-27 07:22:21] -rw-r--r-- 2 boinc boinc     15845 Feb 27 05:42 start_atlas.sh
[2026-02-27 07:22:21] -rw------- 1 boinc boinc 263738793 Feb 27 07:21 HITS.pool.root.1
[2026-02-27 07:22:21] -rw------- 1 boinc boinc   1157120 Feb 27 07:22 result.tar.gz
07:22:22 (428613): run_atlas exited; CPU time 22660.520687
07:22:22 (428613): called boinc_finish(0)

</stderr_txt>
]]>

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