Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:53:57 (692680): wrapper (7.7.26015): starting
00:53:57 (692680): wrapper: running run_atlas (--nthreads 4)
[2026-02-27 00:53:57] Arguments: --nthreads 4
[2026-02-27 00:53:57] Threads: 4
[2026-02-27 00:53:57] Checking for CVMFS
[2026-02-27 00:53:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 00:53:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 00:53:57] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 00:53:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 00:53:57] 2.9.2.0 334716 2024 91156 156673 1 50 27614499 36864001 0 130560 0 1002075 99.981 86758 12866 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 00:53:57] CVMFS is ok
[2026-02-27 00:53:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 00:53:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 00:53:57] Further information can be found at the LHC@home message board.
[2026-02-27 00:53:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 00:53:57] Checking for apptainer binary...
[2026-02-27 00:53:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 00:53:57] Running /usr/bin/apptainer --version
[2026-02-27 00:53:57] apptainer version 1.4.1-1.1
[2026-02-27 00:53:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 00:53:58] thA338
[2026-02-27 00:53:58] apptainer works
[2026-02-27 00:53:58] Set ATHENA_PROC_NUMBER=4
[2026-02-27 00:53:58] Set ATHENA_CORE_NUMBER=4
[2026-02-27 00:53:58] Starting ATLAS job with PandaID=7030292316
[2026-02-27 00:53:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 02:15:41]  *** The last 200 lines of the pilot log: ***
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | job 7030292316 has completed (purged errors)
[2026-02-27 02:15:41] 2026-02-27 01:15:08,616 | INFO     | overall cleanup function is called
[2026-02-27 02:15:41] 2026-02-27 01:15:09,623 | INFO     | --- collectZombieJob: --- 10, [701295]
[2026-02-27 02:15:41] 2026-02-27 01:15:09,623 | INFO     | zombie collector waiting for pid 701295
[2026-02-27 02:15:41] 2026-02-27 01:15:09,623 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 02:15:41] 2026-02-27 01:15:09,624 | INFO     | collected zombie processes
[2026-02-27 02:15:41] 2026-02-27 01:15:09,624 | INFO     | will attempt to kill all subprocesses of pid=701295
[2026-02-27 02:15:41] 2026-02-27 01:15:09,670 | INFO     | process IDs to be killed: [701295] (in reverse order)
[2026-02-27 02:15:41] 2026-02-27 01:15:09,704 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 02:15:41] 2026-02-27 01:15:09,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 02:15:41] 2026-02-27 01:15:09,706 | INFO     | did not find any defunct processes belonging to 701295
[2026-02-27 02:15:41] 2026-02-27 01:15:09,708 | INFO     | did not find any defunct processes belonging to 701295
[2026-02-27 02:15:41] 2026-02-27 01:15:09,708 | INFO     | ready for new job
[2026-02-27 02:15:41] 2026-02-27 01:15:09,708 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 02:15:41] 2026-02-27 01:15:09,708 | INFO     | **************************************
[2026-02-27 02:15:41] 2026-02-27 01:15:09,709 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 02:15:41] 2026-02-27 01:15:09,709 | INFO     | **************************************
[2026-02-27 02:15:41] 2026-02-27 01:15:09,709 | INFO     | 
[2026-02-27 02:15:41] 2026-02-27 01:15:09,709 | INFO     | architecture information:
[2026-02-27 02:15:41] 2026-02-27 01:15:09,709 | INFO     | executing command: cat /etc/os-release
[2026-02-27 02:15:41] 2026-02-27 01:15:09,724 | INFO     | cat /etc/os-release:
[2026-02-27 02:15:41] NAME="CentOS Linux"
[2026-02-27 02:15:41] VERSION="7 (Core)"
[2026-02-27 02:15:41] ID="centos"
[2026-02-27 02:15:41] ID_LIKE="rhel fedora"
[2026-02-27 02:15:41] VERSION_ID="7"
[2026-02-27 02:15:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 02:15:41] ANSI_COLOR="0;31"
[2026-02-27 02:15:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 02:15:41] HOME_URL="https://www.centos.org/"
[2026-02-27 02:15:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 02:15:41] 
[2026-02-27 02:15:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 02:15:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 02:15:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 02:15:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 02:15:41] 
[2026-02-27 02:15:41] 2026-02-27 01:15:09,724 | INFO     | **************************************
[2026-02-27 02:15:41] 2026-02-27 01:15:10,227 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-27 02:15:41] 2026-02-27 01:15:10,246 | INFO     | sufficient remaining disk space (231507755008 B)
[2026-02-27 02:15:41] 2026-02-27 01:15:10,246 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 02:15:41] 2026-02-27 01:15:10,246 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 02:15:41] 2026-02-27 01:15:10,246 | INFO     | update_server=False
[2026-02-27 02:15:41] 2026-02-27 01:15:10,246 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 02:15:41] 2026-02-27 01:15:10,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 02:15:41] 2026-02-27 01:15:10,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 02:15:41] 2026-02-27 01:15:10,292 | INFO     | all payload control threads have been joined
[2026-02-27 02:15:41] 2026-02-27 01:15:10,406 | INFO     | all job control threads have been joined
[2026-02-27 02:15:41] 2026-02-27 01:15:10,587 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 02:15:41] 2026-02-27 01:15:10,587 | INFO     | aborting loop
[2026-02-27 02:15:41] 2026-02-27 01:15:10,810 | INFO     | all data control threads have been joined
[2026-02-27 02:15:41] 2026-02-27 01:15:11,252 | INFO     | [job] retrieve thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:11,252 | INFO     | [job] queue monitor thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:11,298 | INFO     | [payload] control thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:11,328 | INFO     | [data] copytool_in thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:11,412 | INFO     | [job] control thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:11,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 02:15:41] 2026-02-27 01:15:11,593 | INFO     | [job] job monitor thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:11,671 | INFO     | [payload] failed_post thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:11,816 | INFO     | [data] control thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:12,260 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:12,482 | INFO     | [job] validate thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:12,641 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:12,696 | INFO     | [payload] validate_post thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:12,717 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:13,559 | INFO     | [data] copytool_out thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:14,253 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:17,261 | INFO     | [monitor] cgroup control has ended
[2026-02-27 02:15:41] 2026-02-27 01:15:20,512 | INFO     | job.realtimelogging is not enabled
[2026-02-27 02:15:41] 2026-02-27 01:15:21,518 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 02:15:41] 2026-02-27 01:15:21,968 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139715957970752)>', '<ExcThread(monitor, started 139714849912576)>']
[2026-02-27 02:15:41] 2026-02-27 01:15:26,994 | INFO     | all workflow threads have been joined
[2026-02-27 02:15:41] 2026-02-27 01:15:26,994 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 02:15:41] 2026-02-27 01:15:26,994 | INFO     | traces error code: 0
[2026-02-27 02:15:41] 2026-02-27 01:15:26,995 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 02:15:41] 2026-02-27 01:15:40,814 | INFO     | PID=696793 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-27 02:15:41] 2026-02-27 01:15:40,814 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 02:15:41] 2026-02-27 01:15:40,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 02:15:41] 2026-02-27 01:15:40,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 02:15:41] 2026-02-27 01:15:40,814 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 02:15:41] 2026-02-27 01:15:40,814 | INFO     | [monitor] control thread has ended
[2026-02-27 02:15:41] 2026-02-27 01:15:40,903 [wrapper] ==== pilot stdout END ====
[2026-02-27 02:15:41] 2026-02-27 01:15:40,908 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 02:15:41] 2026-02-27 01:15:40,912 [wrapper] pilotpid: 696793
[2026-02-27 02:15:41] 2026-02-27 01:15:40,916 [wrapper] Pilot exit status: 0
[2026-02-27 02:15:41] 2026-02-27 01:15:40,927 [wrapper] pandaids: 7030292316
[2026-02-27 02:15:41] 2026-02-27 01:15:40,951 [wrapper] cleanup supervisor_pilot  706542 696794
[2026-02-27 02:15:41] 2026-02-27 01:15:40,955 [wrapper] Test setup, not cleaning
[2026-02-27 02:15:41] 2026-02-27 01:15:40,958 [wrapper] apfmon messages muted
[2026-02-27 02:15:41] 2026-02-27 01:15:40,962 [wrapper] ==== wrapper stdout END ====
[2026-02-27 02:15:41] 2026-02-27 01:15:40,966 [wrapper] ==== wrapper stderr END ====
[2026-02-27 02:15:41]  *** Error codes and diagnostics ***
[2026-02-27 02:15:41]     "exeErrorCode": 0,
[2026-02-27 02:15:41]     "exeErrorDiag": "",
[2026-02-27 02:15:41]     "pilotErrorCode": 0,
[2026-02-27 02:15:41]     "pilotErrorDiag": "",
[2026-02-27 02:15:41]  *** Listing of results directory ***
[2026-02-27 02:15:41] total 495172
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc      5111 Feb 25 16:36 queuedata.json
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc    584627 Feb 25 16:36 pilot3.tar.gz
[2026-02-27 02:15:41] -rwx------ 1 boinc boinc     36322 Feb 25 16:37 runpilot2-wrapper.sh
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc       100 Feb 27 00:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 02:15:41] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 00:53 run_atlas
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc       105 Feb 27 00:53 job.xml
[2026-02-27 02:15:41] -rw-r--r-- 2 boinc boinc 285510595 Feb 27 00:53 EVNT.48343768._000002.pool.root.1
[2026-02-27 02:15:41] -rw-r--r-- 2 boinc boinc    597948 Feb 27 00:53 input.tar.gz
[2026-02-27 02:15:41] -rw-r--r-- 2 boinc boinc     15845 Feb 27 00:53 start_atlas.sh
[2026-02-27 02:15:41] drwxrwx--x 2 boinc boinc      4096 Feb 27 00:53 shared
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc         0 Feb 27 00:53 boinc_setup_complete
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc      6376 Feb 27 00:53 init_data.xml
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc         0 Feb 27 00:53 boinc_lockfile
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc      2560 Feb 27 00:53 pandaJob.out
[2026-02-27 02:15:41] -rw------- 1 boinc boinc    998489 Feb 27 00:54 agis_schedconf.cvmfs.json
[2026-02-27 02:15:41] -rw------- 1 boinc boinc   1513015 Feb 27 00:54 agis_ddmendpoints.agis.ALL.json
[2026-02-27 02:15:41] -rw------- 1 boinc boinc       427 Feb 27 00:54 workernode_map.json
[2026-02-27 02:15:41] drwx------ 5 boinc boinc      4096 Feb 27 00:54 pilot3
[2026-02-27 02:15:41] -rw------- 1 boinc boinc 215670099 Feb 27 02:14 HITS.48838605._000040.pool.root.1
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc       530 Feb 27 02:14 boinc_task_state.xml
[2026-02-27 02:15:41] -rw------- 1 boinc boinc      1020 Feb 27 02:15 memory_monitor_summary.json
[2026-02-27 02:15:41] -rw------- 1 boinc boinc    268869 Feb 27 02:15 log.48838605._000040.job.log.tgz.1
[2026-02-27 02:15:41] -rw------- 1 boinc boinc      6297 Feb 27 02:15 heartbeat.json
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc        27 Feb 27 02:15 wrapper_checkpoint.txt
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc      8192 Feb 27 02:15 boinc_mmap_file
[2026-02-27 02:15:41] -rw------- 1 boinc boinc       746 Feb 27 02:15 pilotlog.txt
[2026-02-27 02:15:41] -rw------- 1 boinc boinc        95 Feb 27 02:15 pilot_heartbeat.json
[2026-02-27 02:15:41] -rw------- 1 boinc boinc    711692 Feb 27 02:15 log.48838605._000040.job.log.1
[2026-02-27 02:15:41] -rw------- 1 boinc boinc       357 Feb 27 02:15 output.list
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc       620 Feb 27 02:15 runtime_log
[2026-02-27 02:15:41] -rw------- 1 boinc boinc   1003520 Feb 27 02:15 result.tar.gz
[2026-02-27 02:15:41] -rw------- 1 boinc boinc       657 Feb 27 02:15 vyhNDms7VF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmNlyKDm2IyqXn.diag
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc      8896 Feb 27 02:15 runtime_log.err
[2026-02-27 02:15:41] -rw-r--r-- 1 boinc boinc     11908 Feb 27 02:15 stderr.txt
[2026-02-27 02:15:41] HITS file was successfully produced:
[2026-02-27 02:15:41] -rw------- 1 boinc boinc 215670099 Feb 27 02:14 shared/HITS.pool.root.1
[2026-02-27 02:15:41]  *** Contents of shared directory: ***
[2026-02-27 02:15:41] total 491024
[2026-02-27 02:15:41] -rw-r--r-- 2 boinc boinc 285510595 Feb 27 00:53 ATLAS.root_0
[2026-02-27 02:15:41] -rw-r--r-- 2 boinc boinc    597948 Feb 27 00:53 input.tar.gz
[2026-02-27 02:15:41] -rw-r--r-- 2 boinc boinc     15845 Feb 27 00:53 start_atlas.sh
[2026-02-27 02:15:41] -rw------- 1 boinc boinc 215670099 Feb 27 02:14 HITS.pool.root.1
[2026-02-27 02:15:41] -rw------- 1 boinc boinc   1003520 Feb 27 02:15 result.tar.gz
02:15:42 (692680): run_atlas exited; CPU time 18393.589267
02:15:42 (692680): called boinc_finish(0)

</stderr_txt>
]]>

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