Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:30:13 (2370464): wrapper (7.7.26015): starting
17:30:13 (2370464): wrapper: running run_atlas (--nthreads 4)
[2026-02-26 17:30:13] Arguments: --nthreads 4
[2026-02-26 17:30:13] Threads: 4
[2026-02-26 17:30:13] Checking for CVMFS
[2026-02-26 17:30:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-26 17:30:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-26 17:30:13] Running cvmfs_config stat atlas.cern.ch
[2026-02-26 17:30:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-26 17:30:14] 2.13.1.0 1271402 1495 78548 156661 3 188 6739291 10240001 1822 130560 0 2690641 99.994 66581 509 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-02-26 17:30:14] CVMFS is ok
[2026-02-26 17:30:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-26 17:30:14] Checking for apptainer binary...
[2026-02-26 17:30:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-26 17:30:14] Running /usr/bin/apptainer --version
[2026-02-26 17:30:14] apptainer version 1.4.5
[2026-02-26 17:30:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-26 17:30:14] julianvlneu
[2026-02-26 17:30:14] apptainer works
[2026-02-26 17:30:14] Set ATHENA_PROC_NUMBER=4
[2026-02-26 17:30:14] Set ATHENA_CORE_NUMBER=4
[2026-02-26 17:30:14] Starting ATLAS job with PandaID=7030567496
[2026-02-26 17:30:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-26 18:33:48]  *** The last 200 lines of the pilot log: ***
[2026-02-26 18:33:48]  lfn=log.48838521._000380.job.log.tgz.1
[2026-02-26 18:33:48]  mtime=0
[2026-02-26 18:33:48]  protocol_id=None
[2026-02-26 18:33:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-26 18:33:48]  replicas=None
[2026-02-26 18:33:48]  scope=mc23_13p6TeV
[2026-02-26 18:33:48]  status=None
[2026-02-26 18:33:48]  status_code=0
[2026-02-26 18:33:48]  storage_token=
[2026-02-26 18:33:48]  surl=/var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-7030567496/log.48838521._000380.job.log.tgz.1
[2026-02-26 18:33:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/d8/log.48838521._000380.job.log.tgz.1
[2026-02-26 18:33:48]  workdir=None
[2026-02-26 18:33:48] ]
[2026-02-26 18:33:48] 2026-02-26 17:33:12,926 | INFO     | transferring file log.48838521._000380.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-7030567496/log.48838521._000380.job.log.tgz.1 to /var/li
[2026-02-26 18:33:48] 2026-02-26 17:33:12,926 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-7030567496/log.48838521._000380.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-02-26 18:33:48] 2026-02-26 17:33:12,948 | INFO     | adding to output.list: log.48838521._000380.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/d8/log.48838521._000380.job.log.tg
[2026-02-26 18:33:48] 2026-02-26 17:33:12,949 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-26 18:33:48] 2026-02-26 17:33:12,950 | INFO     | summary of transferred files:
[2026-02-26 18:33:48] 2026-02-26 17:33:12,950 | INFO     |  -- lfn=log.48838521._000380.job.log.tgz.1, status_code=0, status=transferred
[2026-02-26 18:33:48] 2026-02-26 17:33:12,950 | INFO     | stage-out finished correctly
[2026-02-26 18:33:48] 2026-02-26 17:33:13,327 | INFO     | time since job start (3758s) is within the limit (349056.0s)
[2026-02-26 18:33:48] 2026-02-26 17:33:13,327 | INFO     | 3765s have passed since pilot start - server update state is 'RUNNING'
[2026-02-26 18:33:48] 2026-02-26 17:33:14,505 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-26 18:33:48] 2026-02-26 17:33:15,334 | INFO     | time since job start (3760s) is within the limit (349056.0s)
[2026-02-26 18:33:48] 2026-02-26 17:33:15,778 | INFO     | job 7030567496 has state=finished
[2026-02-26 18:33:48] 2026-02-26 17:33:15,778 | INFO     | preparing for final server update for job 7030567496 in state='finished'
[2026-02-26 18:33:48] 2026-02-26 17:33:15,778 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-7030567496/jobReport.json
[2026-02-26 18:33:48] 2026-02-26 17:33:15,779 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/2/workernode_map.json
[2026-02-26 18:33:48] 2026-02-26 17:33:15,780 | INFO     | this job has now completed (state=finished)
[2026-02-26 18:33:48] 2026-02-26 17:33:15,780 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-26 18:33:48] 2026-02-26 17:33:15,780 | INFO     | log transfer has been attempted: DONE
[2026-02-26 18:33:48] 2026-02-26 17:33:15,780 | INFO     | job 7030567496 has finished - writing final server update
[2026-02-26 18:33:48] 2026-02-26 17:33:15,780 | INFO     | total number of processed events: 400 (read)
[2026-02-26 18:33:48] 2026-02-26 17:33:15,782 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-7030567496/memory_monitor_summary.json (trf name=prmon)
[2026-02-26 18:33:48] 2026-02-26 17:33:15,782 | INFO     | extracted standard info from prmon json
[2026-02-26 18:33:48] 2026-02-26 17:33:15,782 | INFO     | extracted standard memory fields from prmon json
[2026-02-26 18:33:48] 2026-02-26 17:33:15,782 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-26 18:33:48] 2026-02-26 17:33:15,782 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-26 18:33:48] 2026-02-26 17:33:15,782 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | fitting pss+swap vs Time
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | sum of square deviations: 51573060.0
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | sum of deviations: -3336133126.9999995
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | mean x: 1772125413.0
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | mean y: 2467132.727272727
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | intersect: 114636857558.81128
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | chi2: 0.029896702673392027
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | current memory leak: -64.69 B/s (using 55 data points, chi2=0.03)
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | could have reported an average CPU frequency of 4399 MHz (6 samples)
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | ..............................
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | . Timing measurements:
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | . get job = 0 s
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | . initial setup = 7 s
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | . payload setup = 8 s
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | . stage-in = 0 s
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | . payload execution = 3734 s
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | . stage-out = 0 s
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | . log creation = 0 s
[2026-02-26 18:33:48] 2026-02-26 17:33:15,783 | INFO     | ..............................
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | 
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | job summary report
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | --------------------------------------------------
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | PanDA job id: 7030567496
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | task id: 48838521
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | errors: (none)
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | pilot state: finished 
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | transexitcode: 0
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | exeerrorcode: 0
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | exeerrordiag: 
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | exitcode: 0
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | exitmsg: OK
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | cpuconsumptiontime: 13901 s
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | nevents: 400
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | neventsw: 0
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | pid: 2378851
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | pgrp: 2378851
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | corecount: 4
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | event service: False
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | sizes: {0: 2282285, 10: 2282285, 3747: 2317059, 3749: 2317059, 3750: 2317253}
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | --------------------------------------------------
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | 
[2026-02-26 18:33:48] 2026-02-26 17:33:15,807 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/2
[2026-02-26 18:33:48] 2026-02-26 17:33:15,835 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-26 18:33:48] 2026-02-26 17:33:15,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,837 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-26 18:33:48] 2026-02-26 17:33:15,837 | INFO     | job 7030567496 has completed (purged errors)
[2026-02-26 18:33:48] 2026-02-26 17:33:15,837 | INFO     | overall cleanup function is called
[2026-02-26 18:33:48] 2026-02-26 17:33:16,840 | INFO     | --- collectZombieJob: --- 10, [2378851]
[2026-02-26 18:33:48] 2026-02-26 17:33:16,840 | INFO     | zombie collector waiting for pid 2378851
[2026-02-26 18:33:48] 2026-02-26 17:33:16,840 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-26 18:33:48] 2026-02-26 17:33:16,841 | INFO     | collected zombie processes
[2026-02-26 18:33:48] 2026-02-26 17:33:16,841 | INFO     | will attempt to kill all subprocesses of pid=2378851
[2026-02-26 18:33:48] 2026-02-26 17:33:17,031 | INFO     | process IDs to be killed: [2378851] (in reverse order)
[2026-02-26 18:33:48] 2026-02-26 17:33:17,097 | WARNING  | found no corresponding commands to process id(s)
[2026-02-26 18:33:48] 2026-02-26 17:33:17,098 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-26 18:33:48] 2026-02-26 17:33:17,112 | INFO     | did not find any defunct processes belonging to 2378851
[2026-02-26 18:33:48] 2026-02-26 17:33:17,126 | INFO     | did not find any defunct processes belonging to 2378851
[2026-02-26 18:33:48] 2026-02-26 17:33:17,127 | INFO     | ready for new job
[2026-02-26 18:33:48] 2026-02-26 17:33:17,127 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-26 18:33:48] 2026-02-26 17:33:17,128 | INFO     | **************************************
[2026-02-26 18:33:48] 2026-02-26 17:33:17,129 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-26 18:33:48] 2026-02-26 17:33:17,129 | INFO     | **************************************
[2026-02-26 18:33:48] 2026-02-26 17:33:17,129 | INFO     | 
[2026-02-26 18:33:48] 2026-02-26 17:33:17,129 | INFO     | pilot is running in a VM
[2026-02-26 18:33:48] 2026-02-26 17:33:17,129 | INFO     | architecture information:
[2026-02-26 18:33:48] 2026-02-26 17:33:17,130 | INFO     | executing command: cat /etc/os-release
[2026-02-26 18:33:48] 2026-02-26 17:33:17,145 | INFO     | cat /etc/os-release:
[2026-02-26 18:33:48] NAME="CentOS Linux"
[2026-02-26 18:33:48] VERSION="7 (Core)"
[2026-02-26 18:33:48] ID="centos"
[2026-02-26 18:33:48] ID_LIKE="rhel fedora"
[2026-02-26 18:33:48] VERSION_ID="7"
[2026-02-26 18:33:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-26 18:33:48] ANSI_COLOR="0;31"
[2026-02-26 18:33:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-26 18:33:48] HOME_URL="https://www.centos.org/"
[2026-02-26 18:33:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-26 18:33:48] 
[2026-02-26 18:33:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-26 18:33:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-26 18:33:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-26 18:33:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-26 18:33:48] 
[2026-02-26 18:33:48] 2026-02-26 17:33:17,146 | INFO     | **************************************
[2026-02-26 18:33:48] 2026-02-26 17:33:17,154 | WARNING  | process 2378851 can no longer be monitored (due to stat problems) - aborting
[2026-02-26 18:33:48] 2026-02-26 17:33:17,236 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-02-26 18:33:48] 2026-02-26 17:33:17,343 | INFO     | number of running child processes to parent process 2378851: 1
[2026-02-26 18:33:48] 2026-02-26 17:33:17,343 | INFO     | maximum number of monitored processes: 6
[2026-02-26 18:33:48] 2026-02-26 17:33:17,343 | INFO     | aborting job monitoring since job object (job id=7030567496) has expired
[2026-02-26 18:33:48] 2026-02-26 17:33:17,649 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/2
[2026-02-26 18:33:48] 2026-02-26 17:33:17,663 | INFO     | sufficient remaining disk space (144801005568 B)
[2026-02-26 18:33:48] 2026-02-26 17:33:17,663 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-26 18:33:48] 2026-02-26 17:33:17,664 | INFO     | current server update state: UPDATING_FINAL
[2026-02-26 18:33:48] 2026-02-26 17:33:17,664 | INFO     | update_server=False
[2026-02-26 18:33:48] 2026-02-26 17:33:17,664 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-26 18:33:48] 2026-02-26 17:33:17,664 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-26 18:33:48] 2026-02-26 17:33:17,664 | INFO     | will abort loop
[2026-02-26 18:33:48] 2026-02-26 17:33:17,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-26 18:33:48] 2026-02-26 17:33:18,321 | INFO     | all payload control threads have been joined
[2026-02-26 18:33:48] 2026-02-26 17:33:18,400 | INFO     | all job control threads have been joined
[2026-02-26 18:33:48] 2026-02-26 17:33:18,439 | INFO     | all data control threads have been joined
[2026-02-26 18:33:48] 2026-02-26 17:33:18,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-26 18:33:48] 2026-02-26 17:33:18,669 | INFO     | [job] retrieve thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:18,670 | INFO     | [job] job monitor thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:18,670 | INFO     | [job] queue monitor thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:19,206 | INFO     | [payload] execute_payloads thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:19,327 | INFO     | [payload] control thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:19,377 | INFO     | [job] validate thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:19,406 | INFO     | [job] control thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:19,445 | INFO     | [data] control thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:19,502 | INFO     | [job] create_data_payload thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:19,575 | INFO     | [payload] failed_post thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:19,634 | INFO     | [payload] validate_pre thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:19,642 | INFO     | [data] copytool_in thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:19,985 | INFO     | [payload] validate_post thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:20,496 | INFO     | [data] copytool_out thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:20,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-26 18:33:48] 2026-02-26 17:33:24,547 | INFO     | [data] queue_monitor thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:28,513 | INFO     | job.realtimelogging is not enabled
[2026-02-26 18:33:48] 2026-02-26 17:33:29,519 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-26 18:33:48] 2026-02-26 17:33:39,826 | INFO     | [monitor] cgroup control has ended
[2026-02-26 18:33:48] 2026-02-26 17:33:40,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136688278718272)>', '<ExcThread(monitor, started 136687166404352)>']
[2026-02-26 18:33:48] 2026-02-26 17:33:45,558 | INFO     | all workflow threads have been joined
[2026-02-26 18:33:48] 2026-02-26 17:33:45,558 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-26 18:33:48] 2026-02-26 17:33:45,558 | INFO     | traces error code: 0
[2026-02-26 18:33:48] 2026-02-26 17:33:45,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-26 18:33:48] 2026-02-26 17:33:48,590 | INFO     | PID=2374306 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-26 18:33:48] 2026-02-26 17:33:48,590 | INFO     | .. there are 3 such processes running
[2026-02-26 18:33:48] 2026-02-26 17:33:48,590 | INFO     | found 0 job(s) in 20 queues
[2026-02-26 18:33:48] 2026-02-26 17:33:48,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-26 18:33:48] 2026-02-26 17:33:48,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-26 18:33:48] 2026-02-26 17:33:48,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-26 18:33:48] 2026-02-26 17:33:48,590 | INFO     | [monitor] control thread has ended
[2026-02-26 18:33:48] 2026-02-26 17:33:48,670 [wrapper] ==== pilot stdout END ====
[2026-02-26 18:33:48] 2026-02-26 17:33:48,675 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-26 18:33:48] 2026-02-26 17:33:48,680 [wrapper] pilotpid: 2374306
[2026-02-26 18:33:48] 2026-02-26 17:33:48,685 [wrapper] Pilot exit status: 0
[2026-02-26 18:33:48] 2026-02-26 17:33:48,701 [wrapper] pandaids: 7030567496
[2026-02-26 18:33:48] 2026-02-26 17:33:48,759 [wrapper] cleanup supervisor_pilot 2416005 2374307
[2026-02-26 18:33:48] 2026-02-26 17:33:48,764 [wrapper] Test setup, not cleaning
[2026-02-26 18:33:48] 2026-02-26 17:33:48,769 [wrapper] apfmon messages muted
[2026-02-26 18:33:48] 2026-02-26 17:33:48,774 [wrapper] ==== wrapper stdout END ====
[2026-02-26 18:33:48] 2026-02-26 17:33:48,778 [wrapper] ==== wrapper stderr END ====
[2026-02-26 18:33:48]  *** Error codes and diagnostics ***
[2026-02-26 18:33:48]     "exeErrorCode": 0,
[2026-02-26 18:33:48]     "exeErrorDiag": "",
[2026-02-26 18:33:48]     "pilotErrorCode": 0,
[2026-02-26 18:33:48]     "pilotErrorDiag": "",
[2026-02-26 18:33:48]  *** Listing of results directory ***
[2026-02-26 18:33:48] insgesamt 467488
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc    584627 Feb 26 08:13 pilot3.tar.gz
[2026-02-26 18:33:48] -rwx------ 1 yeti boinc     36322 Feb 26 08:16 runpilot2-wrapper.sh
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc      5111 Feb 26 08:20 queuedata.json
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc       100 Feb 26 17:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-26 18:33:48] -rwxr-xr-x 1 yeti boinc      7986 Feb 26 17:30 run_atlas
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc       105 Feb 26 17:30 job.xml
[2026-02-26 18:33:48] -rw-r--r-- 2 yeti boinc 270400261 Feb 26 17:30 EVNT.48343683._000019.pool.root.1
[2026-02-26 18:33:48] -rw-r--r-- 2 yeti boinc     15845 Feb 26 17:30 start_atlas.sh
[2026-02-26 18:33:48] drwxrwx--x 2 yeti boinc      4096 Feb 26 17:30 shared
[2026-02-26 18:33:48] -rw-r--r-- 2 yeti boinc    597956 Feb 26 17:30 input.tar.gz
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc      6732 Feb 26 17:30 init_data.xml
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc         0 Feb 26 17:30 boinc_setup_complete
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc         0 Feb 26 17:30 boinc_lockfile
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc      2562 Feb 26 17:30 pandaJob.out
[2026-02-26 18:33:48] -rw------- 1 yeti boinc        52 Feb 26 17:30 setup.sh.local
[2026-02-26 18:33:48] -rw------- 1 yeti boinc    996541 Feb 26 17:30 agis_schedconf.cvmfs.json
[2026-02-26 18:33:48] -rw------- 1 yeti boinc   1513015 Feb 26 17:30 agis_ddmendpoints.agis.ALL.json
[2026-02-26 18:33:48] -rw------- 1 yeti boinc       425 Feb 26 17:30 workernode_map.json
[2026-02-26 18:33:48] drwx------ 5 yeti boinc      4096 Feb 26 17:30 pilot3
[2026-02-26 18:33:48] -rw------- 1 yeti boinc 202733438 Feb 26 18:32 HITS.48838521._000380.pool.root.1
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc       530 Feb 26 18:33 boinc_task_state.xml
[2026-02-26 18:33:48] -rw------- 1 yeti boinc        95 Feb 26 18:33 pilot_heartbeat.json
[2026-02-26 18:33:48] -rw------- 1 yeti boinc      1034 Feb 26 18:33 memory_monitor_summary.json
[2026-02-26 18:33:48] -rw------- 1 yeti boinc    243829 Feb 26 18:33 log.48838521._000380.job.log.tgz.1
[2026-02-26 18:33:48] -rw------- 1 yeti boinc      6284 Feb 26 18:33 heartbeat.json
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc        27 Feb 26 18:33 wrapper_checkpoint.txt
[2026-02-26 18:33:48] -rw------- 1 yeti boinc       822 Feb 26 18:33 pilotlog.txt
[2026-02-26 18:33:48] -rw------- 1 yeti boinc    579346 Feb 26 18:33 log.48838521._000380.job.log.1
[2026-02-26 18:33:48] -rw------- 1 yeti boinc       357 Feb 26 18:33 output.list
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc      8192 Feb 26 18:33 boinc_mmap_file
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc       620 Feb 26 18:33 runtime_log
[2026-02-26 18:33:48] -rw------- 1 yeti boinc    839680 Feb 26 18:33 result.tar.gz
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc      9556 Feb 26 18:33 runtime_log.err
[2026-02-26 18:33:48] -rw------- 1 yeti boinc       639 Feb 26 18:33 jNjLDmCnkF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmYm0KDmwaMLym.diag
[2026-02-26 18:33:48] -rw-r--r-- 1 yeti boinc     21381 Feb 26 18:33 stderr.txt
[2026-02-26 18:33:48] HITS file was successfully produced:
[2026-02-26 18:33:48] -rw------- 1 yeti boinc 202733438 Feb 26 18:32 shared/HITS.pool.root.1
[2026-02-26 18:33:48]  *** Contents of shared directory: ***
[2026-02-26 18:33:48] insgesamt 463476
[2026-02-26 18:33:48] -rw-r--r-- 2 yeti boinc 270400261 Feb 26 17:30 ATLAS.root_0
[2026-02-26 18:33:48] -rw-r--r-- 2 yeti boinc     15845 Feb 26 17:30 start_atlas.sh
[2026-02-26 18:33:48] -rw-r--r-- 2 yeti boinc    597956 Feb 26 17:30 input.tar.gz
[2026-02-26 18:33:48] -rw------- 1 yeti boinc 202733438 Feb 26 18:32 HITS.pool.root.1
[2026-02-26 18:33:48] -rw------- 1 yeti boinc    839680 Feb 26 18:33 result.tar.gz
18:33:50 (2370464): run_atlas exited; CPU time 14001.913374
18:33:50 (2370464): called boinc_finish(0)

</stderr_txt>
]]>

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