Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:16:40 (260017): wrapper (7.7.26015): starting
02:16:40 (260017): wrapper: running run_atlas (--nthreads 4)
[2026-02-27 02:16:40] Arguments: --nthreads 4
[2026-02-27 02:16:40] Threads: 4
[2026-02-27 02:16:40] Checking for CVMFS
[2026-02-27 02:16:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 02:16:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 02:16:41] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 02:16:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 02:16:41] 2.9.2.0 3030 1511 83512 156677 3 8 27267677 36864001 0 130560 0 719069 99.983 60100 15878 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 02:16:41] CVMFS is ok
[2026-02-27 02:16:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 02:16:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 02:16:41] Further information can be found at the LHC@home message board.
[2026-02-27 02:16:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 02:16:41] Checking for apptainer binary...
[2026-02-27 02:16:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 02:16:41] Running /usr/bin/apptainer --version
[2026-02-27 02:16:41] apptainer version 1.4.1-1.1
[2026-02-27 02:16:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 02:16:41] atlasA215b
[2026-02-27 02:16:41] apptainer works
[2026-02-27 02:16:41] Set ATHENA_PROC_NUMBER=4
[2026-02-27 02:16:41] Set ATHENA_CORE_NUMBER=4
[2026-02-27 02:16:41] Starting ATLAS job with PandaID=7030568164
[2026-02-27 02:16:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 03:38:27]  *** The last 200 lines of the pilot log: ***
[2026-02-27 03:38:27] 2026-02-27 02:37:56,210 | INFO     | --- collectZombieJob: --- 10, [268639]
[2026-02-27 03:38:27] 2026-02-27 02:37:56,211 | INFO     | zombie collector waiting for pid 268639
[2026-02-27 03:38:27] 2026-02-27 02:37:56,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 03:38:27] 2026-02-27 02:37:56,211 | INFO     | collected zombie processes
[2026-02-27 03:38:27] 2026-02-27 02:37:56,211 | INFO     | will attempt to kill all subprocesses of pid=268639
[2026-02-27 03:38:27] 2026-02-27 02:37:56,253 | INFO     | process IDs to be killed: [268639] (in reverse order)
[2026-02-27 03:38:27] 2026-02-27 02:37:56,287 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 03:38:27] 2026-02-27 02:37:56,287 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 03:38:27] 2026-02-27 02:37:56,289 | INFO     | did not find any defunct processes belonging to 268639
[2026-02-27 03:38:27] 2026-02-27 02:37:56,290 | INFO     | did not find any defunct processes belonging to 268639
[2026-02-27 03:38:27] 2026-02-27 02:37:56,290 | INFO     | ready for new job
[2026-02-27 03:38:27] 2026-02-27 02:37:56,291 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 03:38:27] 2026-02-27 02:37:56,291 | INFO     | **************************************
[2026-02-27 03:38:27] 2026-02-27 02:37:56,291 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 03:38:27] 2026-02-27 02:37:56,291 | INFO     | **************************************
[2026-02-27 03:38:27] 2026-02-27 02:37:56,291 | INFO     | 
[2026-02-27 03:38:27] 2026-02-27 02:37:56,292 | INFO     | architecture information:
[2026-02-27 03:38:27] 2026-02-27 02:37:56,292 | INFO     | executing command: cat /etc/os-release
[2026-02-27 03:38:27] 2026-02-27 02:37:56,307 | INFO     | cat /etc/os-release:
[2026-02-27 03:38:27] NAME="CentOS Linux"
[2026-02-27 03:38:27] VERSION="7 (Core)"
[2026-02-27 03:38:27] ID="centos"
[2026-02-27 03:38:27] ID_LIKE="rhel fedora"
[2026-02-27 03:38:27] VERSION_ID="7"
[2026-02-27 03:38:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 03:38:27] ANSI_COLOR="0;31"
[2026-02-27 03:38:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 03:38:27] HOME_URL="https://www.centos.org/"
[2026-02-27 03:38:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 03:38:27] 
[2026-02-27 03:38:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 03:38:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 03:38:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 03:38:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 03:38:27] 
[2026-02-27 03:38:27] 2026-02-27 02:37:56,307 | INFO     | **************************************
[2026-02-27 03:38:27] 2026-02-27 02:37:56,810 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-27 03:38:27] 2026-02-27 02:37:56,829 | INFO     | sufficient remaining disk space (331741134848 B)
[2026-02-27 03:38:27] 2026-02-27 02:37:56,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 03:38:27] 2026-02-27 02:37:56,829 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 03:38:27] 2026-02-27 02:37:56,829 | INFO     | update_server=False
[2026-02-27 03:38:27] 2026-02-27 02:37:56,829 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 03:38:27] 2026-02-27 02:37:56,829 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 03:38:27] 2026-02-27 02:37:56,830 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 03:38:27] 2026-02-27 02:37:56,925 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 03:38:27] 2026-02-27 02:37:57,057 | INFO     | all payload control threads have been joined
[2026-02-27 03:38:27] 2026-02-27 02:37:57,091 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-27 03:38:27] 2026-02-27 02:37:57,091 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-27 03:38:27] 2026-02-27 02:37:57,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 03:38:27] 2026-02-27 02:37:57,091 | INFO     | will abort loop
[2026-02-27 03:38:27] 2026-02-27 02:37:57,513 | INFO     | all data control threads have been joined
[2026-02-27 03:38:27] 2026-02-27 02:37:57,755 | INFO     | all job control threads have been joined
[2026-02-27 03:38:27] 2026-02-27 02:37:57,835 | INFO     | [job] retrieve thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:57,835 | INFO     | [job] queue monitor thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:57,849 | INFO     | [job] validate thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:57,930 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:57,930 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:58,059 | INFO     | [payload] control thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:58,097 | INFO     | [job] job monitor thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:58,160 | INFO     | [data] copytool_in thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:58,518 | INFO     | [data] control thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:58,627 | INFO     | [monitor] cgroup control has ended
[2026-02-27 03:38:27] 2026-02-27 02:37:58,644 | INFO     | [payload] failed_post thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:58,760 | INFO     | [job] control thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:58,930 | INFO     | [data] copytool_out thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:58,993 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:59,332 | INFO     | [payload] validate_post thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:37:59,725 | INFO     | job.realtimelogging is not enabled
[2026-02-27 03:38:27] 2026-02-27 02:38:00,731 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:38:00,837 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 03:38:27] 2026-02-27 02:38:02,599 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140215028860736)>', '<ExcThread(monitor, started 140214081144576)>']
[2026-02-27 03:38:27] 2026-02-27 02:38:07,624 | INFO     | all workflow threads have been joined
[2026-02-27 03:38:27] 2026-02-27 02:38:07,625 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 03:38:27] 2026-02-27 02:38:07,625 | INFO     | traces error code: 0
[2026-02-27 03:38:27] 2026-02-27 02:38:07,625 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 03:38:27] 2026-02-27 02:38:26,827 | INFO     | PID=264133 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-27 03:38:27] 2026-02-27 02:38:26,828 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 03:38:27] 2026-02-27 02:38:26,828 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 03:38:27] 2026-02-27 02:38:26,828 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 03:38:27] 2026-02-27 02:38:26,828 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 03:38:27] 2026-02-27 02:38:26,828 | INFO     | [monitor] control thread has ended
[2026-02-27 03:38:27] 2026-02-27 02:38:26,904 [wrapper] ==== pilot stdout END ====
[2026-02-27 03:38:27] 2026-02-27 02:38:26,909 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 03:38:27] 2026-02-27 02:38:26,913 [wrapper] pilotpid: 264133
[2026-02-27 03:38:27] 2026-02-27 02:38:26,917 [wrapper] Pilot exit status: 0
[2026-02-27 03:38:27] 2026-02-27 02:38:26,929 [wrapper] pandaids: 7030568164
[2026-02-27 03:38:27] 2026-02-27 02:38:26,950 [wrapper] cleanup supervisor_pilot  273832 264134
[2026-02-27 03:38:27] 2026-02-27 02:38:26,954 [wrapper] Test setup, not cleaning
[2026-02-27 03:38:27] 2026-02-27 02:38:26,958 [wrapper] apfmon messages muted
[2026-02-27 03:38:27] 2026-02-27 02:38:26,962 [wrapper] ==== wrapper stdout END ====
[2026-02-27 03:38:27] 2026-02-27 02:38:26,966 [wrapper] ==== wrapper stderr END ====
[2026-02-27 03:38:27]  *** Error codes and diagnostics ***
[2026-02-27 03:38:27]     "exeErrorCode": 0,
[2026-02-27 03:38:27]     "exeErrorDiag": "",
[2026-02-27 03:38:27]     "pilotErrorCode": 0,
[2026-02-27 03:38:27]     "pilotErrorDiag": "",
[2026-02-27 03:38:27]  *** Listing of results directory ***
[2026-02-27 03:38:27] total 468500
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc    584627 Feb 26 08:13 pilot3.tar.gz
[2026-02-27 03:38:27] -rwx------ 1 boinc boinc     36322 Feb 26 08:16 runpilot2-wrapper.sh
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc      5111 Feb 26 08:20 queuedata.json
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc       100 Feb 27 02:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 03:38:27] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 02:16 run_atlas
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc       105 Feb 27 02:16 job.xml
[2026-02-27 03:38:27] -rw-r--r-- 2 boinc boinc 270495130 Feb 27 02:16 EVNT.48343683._000024.pool.root.1
[2026-02-27 03:38:27] -rw-r--r-- 2 boinc boinc    597959 Feb 27 02:16 input.tar.gz
[2026-02-27 03:38:27] -rw-r--r-- 2 boinc boinc     15845 Feb 27 02:16 start_atlas.sh
[2026-02-27 03:38:27] drwxrwx--x 2 boinc boinc      4096 Feb 27 02:16 shared
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc         0 Feb 27 02:16 boinc_setup_complete
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc      6372 Feb 27 02:16 init_data.xml
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc         0 Feb 27 02:16 boinc_lockfile
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc      2562 Feb 27 02:16 pandaJob.out
[2026-02-27 03:38:27] -rw------- 1 boinc boinc    998489 Feb 27 02:16 agis_schedconf.cvmfs.json
[2026-02-27 03:38:27] -rw------- 1 boinc boinc   1513015 Feb 27 02:16 agis_ddmendpoints.agis.ALL.json
[2026-02-27 03:38:27] -rw------- 1 boinc boinc       431 Feb 27 02:16 workernode_map.json
[2026-02-27 03:38:27] drwx------ 5 boinc boinc      4096 Feb 27 02:16 pilot3
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc       529 Feb 27 03:37 boinc_task_state.xml
[2026-02-27 03:38:27] -rw------- 1 boinc boinc 203389952 Feb 27 03:37 HITS.48838521._000510.pool.root.1
[2026-02-27 03:38:27] -rw------- 1 boinc boinc      1021 Feb 27 03:37 memory_monitor_summary.json
[2026-02-27 03:38:27] -rw------- 1 boinc boinc    263729 Feb 27 03:37 log.48838521._000510.job.log.tgz.1
[2026-02-27 03:38:27] -rw------- 1 boinc boinc      6319 Feb 27 03:37 heartbeat.json
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc      8192 Feb 27 03:38 boinc_mmap_file
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc        27 Feb 27 03:38 wrapper_checkpoint.txt
[2026-02-27 03:38:27] -rw------- 1 boinc boinc       746 Feb 27 03:38 pilotlog.txt
[2026-02-27 03:38:27] -rw------- 1 boinc boinc        95 Feb 27 03:38 pilot_heartbeat.json
[2026-02-27 03:38:27] -rw------- 1 boinc boinc    712559 Feb 27 03:38 log.48838521._000510.job.log.1
[2026-02-27 03:38:27] -rw------- 1 boinc boinc       357 Feb 27 03:38 output.list
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc       620 Feb 27 03:38 runtime_log
[2026-02-27 03:38:27] -rw------- 1 boinc boinc    993280 Feb 27 03:38 result.tar.gz
[2026-02-27 03:38:27] -rw------- 1 boinc boinc       661 Feb 27 03:38 sn6MDmCnkF9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmeV2KDm3RI6Jm.diag
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc      8916 Feb 27 03:38 runtime_log.err
[2026-02-27 03:38:27] -rw-r--r-- 1 boinc boinc     10923 Feb 27 03:38 stderr.txt
[2026-02-27 03:38:27] HITS file was successfully produced:
[2026-02-27 03:38:27] -rw------- 1 boinc boinc 203389952 Feb 27 03:37 shared/HITS.pool.root.1
[2026-02-27 03:38:27]  *** Contents of shared directory: ***
[2026-02-27 03:38:27] total 464356
[2026-02-27 03:38:27] -rw-r--r-- 2 boinc boinc 270495130 Feb 27 02:16 ATLAS.root_0
[2026-02-27 03:38:27] -rw-r--r-- 2 boinc boinc    597959 Feb 27 02:16 input.tar.gz
[2026-02-27 03:38:27] -rw-r--r-- 2 boinc boinc     15845 Feb 27 02:16 start_atlas.sh
[2026-02-27 03:38:27] -rw------- 1 boinc boinc 203389952 Feb 27 03:37 HITS.pool.root.1
[2026-02-27 03:38:27] -rw------- 1 boinc boinc    993280 Feb 27 03:38 result.tar.gz
03:38:49 (260017): run_atlas exited; CPU time 18128.018791
03:38:49 (260017): called boinc_finish(0)

</stderr_txt>
]]>

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