Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:25:03 (491998): wrapper (7.7.26015): starting
06:25:03 (491998): wrapper: running run_atlas (--nthreads 3)
[2026-02-27 06:25:03] Arguments: --nthreads 3
[2026-02-27 06:25:03] Threads: 3
[2026-02-27 06:25:03] Checking for CVMFS
[2026-02-27 06:25:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 06:25:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 06:25:04] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 06:25:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 06:25:04] 2.9.2.0 173174 2075 77556 156684 1 50 28603702 36864001 0 130560 0 877596 99.981 90696 16936 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 06:25:04] CVMFS is ok
[2026-02-27 06:25:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 06:25:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 06:25:04] Further information can be found at the LHC@home message board.
[2026-02-27 06:25:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 06:25:04] Checking for apptainer binary...
[2026-02-27 06:25:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 06:25:04] Running /usr/bin/apptainer --version
[2026-02-27 06:25:04] apptainer version 1.4.1-1.1
[2026-02-27 06:25:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 06:25:04] magicA246a
[2026-02-27 06:25:04] apptainer works
[2026-02-27 06:25:04] Set ATHENA_PROC_NUMBER=3
[2026-02-27 06:25:04] Set ATHENA_CORE_NUMBER=3
[2026-02-27 06:25:04] Starting ATLAS job with PandaID=7030732008
[2026-02-27 06:25:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 08:00:39]  *** The last 200 lines of the pilot log: ***
[2026-02-27 08:00:39] 2026-02-27 07:00:07,541 | INFO     | job 7030732008 has completed (purged errors)
[2026-02-27 08:00:39] 2026-02-27 07:00:07,541 | INFO     | overall cleanup function is called
[2026-02-27 08:00:39] 2026-02-27 07:00:08,548 | INFO     | --- collectZombieJob: --- 10, [500477]
[2026-02-27 08:00:39] 2026-02-27 07:00:08,548 | INFO     | zombie collector waiting for pid 500477
[2026-02-27 08:00:39] 2026-02-27 07:00:08,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 08:00:39] 2026-02-27 07:00:08,548 | INFO     | collected zombie processes
[2026-02-27 08:00:39] 2026-02-27 07:00:08,548 | INFO     | will attempt to kill all subprocesses of pid=500477
[2026-02-27 08:00:39] 2026-02-27 07:00:08,591 | INFO     | process IDs to be killed: [500477] (in reverse order)
[2026-02-27 08:00:39] 2026-02-27 07:00:08,618 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 08:00:39] 2026-02-27 07:00:08,618 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 08:00:39] 2026-02-27 07:00:08,619 | INFO     | did not find any defunct processes belonging to 500477
[2026-02-27 08:00:39] 2026-02-27 07:00:08,620 | INFO     | did not find any defunct processes belonging to 500477
[2026-02-27 08:00:39] 2026-02-27 07:00:08,620 | INFO     | ready for new job
[2026-02-27 08:00:39] 2026-02-27 07:00:08,620 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 08:00:39] 2026-02-27 07:00:08,621 | INFO     | **************************************
[2026-02-27 08:00:39] 2026-02-27 07:00:08,621 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 08:00:39] 2026-02-27 07:00:08,621 | INFO     | **************************************
[2026-02-27 08:00:39] 2026-02-27 07:00:08,621 | INFO     | 
[2026-02-27 08:00:39] 2026-02-27 07:00:08,621 | INFO     | architecture information:
[2026-02-27 08:00:39] 2026-02-27 07:00:08,622 | INFO     | executing command: cat /etc/os-release
[2026-02-27 08:00:39] 2026-02-27 07:00:08,631 | INFO     | cat /etc/os-release:
[2026-02-27 08:00:39] NAME="CentOS Linux"
[2026-02-27 08:00:39] VERSION="7 (Core)"
[2026-02-27 08:00:39] ID="centos"
[2026-02-27 08:00:39] ID_LIKE="rhel fedora"
[2026-02-27 08:00:39] VERSION_ID="7"
[2026-02-27 08:00:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 08:00:39] ANSI_COLOR="0;31"
[2026-02-27 08:00:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 08:00:39] HOME_URL="https://www.centos.org/"
[2026-02-27 08:00:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 08:00:39] 
[2026-02-27 08:00:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 08:00:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 08:00:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 08:00:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 08:00:39] 
[2026-02-27 08:00:39] 2026-02-27 07:00:08,632 | INFO     | **************************************
[2026-02-27 08:00:39] 2026-02-27 07:00:09,135 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-27 08:00:39] 2026-02-27 07:00:09,148 | INFO     | sufficient remaining disk space (275201916928 B)
[2026-02-27 08:00:39] 2026-02-27 07:00:09,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 08:00:39] 2026-02-27 07:00:09,149 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 08:00:39] 2026-02-27 07:00:09,149 | INFO     | update_server=False
[2026-02-27 08:00:39] 2026-02-27 07:00:09,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 08:00:39] 2026-02-27 07:00:09,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 08:00:39] 2026-02-27 07:00:09,832 | INFO     | all payload control threads have been joined
[2026-02-27 08:00:39] 2026-02-27 07:00:09,904 | INFO     | all data control threads have been joined
[2026-02-27 08:00:39] 2026-02-27 07:00:10,065 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 08:00:39] 2026-02-27 07:00:10,155 | INFO     | [job] retrieve thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:10,174 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:10,280 | INFO     | [payload] failed_post thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:10,336 | INFO     | [data] copytool_in thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:10,691 | INFO     | all job control threads have been joined
[2026-02-27 08:00:39] 2026-02-27 07:00:10,838 | INFO     | [payload] control thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:10,894 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:10,909 | INFO     | [data] control thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:11,214 | INFO     | [payload] validate_post thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:11,371 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:11,543 | INFO     | [job] validate thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:11,591 | WARNING  | process 500477 can no longer be monitored (due to stat problems) - aborting
[2026-02-27 08:00:39] 2026-02-27 07:00:11,619 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-27 08:00:39] 2026-02-27 07:00:11,643 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:11,656 | INFO     | number of running child processes to parent process 500477: 1
[2026-02-27 08:00:39] 2026-02-27 07:00:11,656 | INFO     | maximum number of monitored processes: 6
[2026-02-27 08:00:39] 2026-02-27 07:00:11,656 | INFO     | aborting job monitoring since job object (job id=7030732008) has expired
[2026-02-27 08:00:39] 2026-02-27 07:00:11,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 08:00:39] 2026-02-27 07:00:11,656 | INFO     | will abort loop
[2026-02-27 08:00:39] 2026-02-27 07:00:11,697 | INFO     | [job] control thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:12,071 | INFO     | [data] copytool_out thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:12,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 08:00:39] 2026-02-27 07:00:12,661 | INFO     | [job] job monitor thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:13,133 | INFO     | [job] queue monitor thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:13,155 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 08:00:39] 2026-02-27 07:00:22,899 | INFO     | [monitor] cgroup control has ended
[2026-02-27 08:00:39] 2026-02-27 07:00:24,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140425959503680)>', '<ExcThread(monitor, started 140424995911424)>']
[2026-02-27 08:00:39] 2026-02-27 07:00:29,875 | INFO     | all workflow threads have been joined
[2026-02-27 08:00:39] 2026-02-27 07:00:29,875 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 08:00:39] 2026-02-27 07:00:29,875 | INFO     | traces error code: 0
[2026-02-27 08:00:39] 2026-02-27 07:00:29,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 08:00:39] 2026-02-27 07:00:39,177 | INFO     | PID=496042 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-27 08:00:39] 2026-02-27 07:00:39,177 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 08:00:39] 2026-02-27 07:00:39,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 08:00:39] 2026-02-27 07:00:39,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 08:00:39] 2026-02-27 07:00:39,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 08:00:39] 2026-02-27 07:00:39,177 | INFO     | [monitor] control thread has ended
[2026-02-27 08:00:39] 2026-02-27 07:00:39,229 [wrapper] ==== pilot stdout END ====
[2026-02-27 08:00:39] 2026-02-27 07:00:39,232 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 08:00:39] 2026-02-27 07:00:39,234 [wrapper] pilotpid: 496042
[2026-02-27 08:00:39] 2026-02-27 07:00:39,237 [wrapper] Pilot exit status: 0
[2026-02-27 08:00:39] 2026-02-27 07:00:39,245 [wrapper] pandaids: 7030732008
[2026-02-27 08:00:39] 2026-02-27 07:00:39,262 [wrapper] cleanup supervisor_pilot  505956 496043
[2026-02-27 08:00:39] 2026-02-27 07:00:39,265 [wrapper] Test setup, not cleaning
[2026-02-27 08:00:39] 2026-02-27 07:00:39,267 [wrapper] apfmon messages muted
[2026-02-27 08:00:39] 2026-02-27 07:00:39,270 [wrapper] ==== wrapper stdout END ====
[2026-02-27 08:00:39] 2026-02-27 07:00:39,272 [wrapper] ==== wrapper stderr END ====
[2026-02-27 08:00:39]  *** Error codes and diagnostics ***
[2026-02-27 08:00:39]     "exeErrorCode": 0,
[2026-02-27 08:00:39]     "exeErrorDiag": "",
[2026-02-27 08:00:39]     "pilotErrorCode": 0,
[2026-02-27 08:00:39]     "pilotErrorDiag": "",
[2026-02-27 08:00:39]  *** Listing of results directory ***
[2026-02-27 08:00:39] total 494612
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc    584627 Feb 26 13:16 pilot3.tar.gz
[2026-02-27 08:00:39] -rwx------ 1 boinc boinc     36322 Feb 26 13:20 runpilot2-wrapper.sh
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc      5111 Feb 26 13:24 queuedata.json
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc       100 Feb 27 06:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 08:00:39] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 06:25 run_atlas
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc       105 Feb 27 06:25 job.xml
[2026-02-27 08:00:39] -rw-r--r-- 2 boinc boinc 281144678 Feb 27 06:25 EVNT.48220117._000059.pool.root.1
[2026-02-27 08:00:39] -rw-r--r-- 2 boinc boinc    597965 Feb 27 06:25 input.tar.gz
[2026-02-27 08:00:39] -rw-r--r-- 2 boinc boinc     15845 Feb 27 06:25 start_atlas.sh
[2026-02-27 08:00:39] drwxrwx--x 2 boinc boinc      4096 Feb 27 06:25 shared
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc         0 Feb 27 06:25 boinc_setup_complete
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc      6448 Feb 27 06:25 init_data.xml
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc         0 Feb 27 06:25 boinc_lockfile
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc      2571 Feb 27 06:25 pandaJob.out
[2026-02-27 08:00:39] -rw------- 1 boinc boinc    998489 Feb 27 06:25 agis_schedconf.cvmfs.json
[2026-02-27 08:00:39] -rw------- 1 boinc boinc   1513015 Feb 27 06:25 agis_ddmendpoints.agis.ALL.json
[2026-02-27 08:00:39] -rw------- 1 boinc boinc       428 Feb 27 06:25 workernode_map.json
[2026-02-27 08:00:39] drwx------ 5 boinc boinc      4096 Feb 27 06:25 pilot3
[2026-02-27 08:00:39] -rw------- 1 boinc boinc        95 Feb 27 07:59 pilot_heartbeat.json
[2026-02-27 08:00:39] -rw------- 1 boinc boinc 219230852 Feb 27 07:59 HITS.48838447._001418.pool.root.1
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc       529 Feb 27 07:59 boinc_task_state.xml
[2026-02-27 08:00:39] -rw------- 1 boinc boinc      1018 Feb 27 08:00 memory_monitor_summary.json
[2026-02-27 08:00:39] -rw------- 1 boinc boinc    270998 Feb 27 08:00 log.48838447._001418.job.log.tgz.1
[2026-02-27 08:00:39] -rw------- 1 boinc boinc      6311 Feb 27 08:00 heartbeat.json
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc      8192 Feb 27 08:00 boinc_mmap_file
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc        27 Feb 27 08:00 wrapper_checkpoint.txt
[2026-02-27 08:00:39] -rw------- 1 boinc boinc       746 Feb 27 08:00 pilotlog.txt
[2026-02-27 08:00:39] -rw------- 1 boinc boinc    827003 Feb 27 08:00 log.48838447._001418.job.log.1
[2026-02-27 08:00:39] -rw------- 1 boinc boinc       357 Feb 27 08:00 output.list
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc       620 Feb 27 08:00 runtime_log
[2026-02-27 08:00:39] -rw------- 1 boinc boinc   1116160 Feb 27 08:00 result.tar.gz
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc      8916 Feb 27 08:00 runtime_log.err
[2026-02-27 08:00:39] -rw------- 1 boinc boinc       661 Feb 27 08:00 rt2MDmMXpF9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmd12KDmolnHNn.diag
[2026-02-27 08:00:39] -rw-r--r-- 1 boinc boinc     11432 Feb 27 08:00 stderr.txt
[2026-02-27 08:00:39] HITS file was successfully produced:
[2026-02-27 08:00:39] -rw------- 1 boinc boinc 219230852 Feb 27 07:59 shared/HITS.pool.root.1
[2026-02-27 08:00:39]  *** Contents of shared directory: ***
[2026-02-27 08:00:39] total 490348
[2026-02-27 08:00:39] -rw-r--r-- 2 boinc boinc 281144678 Feb 27 06:25 ATLAS.root_0
[2026-02-27 08:00:39] -rw-r--r-- 2 boinc boinc    597965 Feb 27 06:25 input.tar.gz
[2026-02-27 08:00:39] -rw-r--r-- 2 boinc boinc     15845 Feb 27 06:25 start_atlas.sh
[2026-02-27 08:00:39] -rw------- 1 boinc boinc 219230852 Feb 27 07:59 HITS.pool.root.1
[2026-02-27 08:00:39] -rw------- 1 boinc boinc   1116160 Feb 27 08:00 result.tar.gz
08:00:40 (491998): run_atlas exited; CPU time 16374.656343
08:00:40 (491998): called boinc_finish(0)

</stderr_txt>
]]>

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