Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:06:20 (434765): wrapper (7.7.26015): starting
00:06:20 (434765): wrapper: running run_atlas (--nthreads 3)
[2026-02-27 00:06:20] Arguments: --nthreads 3
[2026-02-27 00:06:20] Threads: 3
[2026-02-27 00:06:20] Checking for CVMFS
[2026-02-27 00:06:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 00:06:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 00:06:21] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 00:06:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 00:06:21] 2.9.2.0 173174 1697 76108 156670 3 49 28536537 36864000 0 130560 0 716965 99.983 69230 15491 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 00:06:21] CVMFS is ok
[2026-02-27 00:06:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 00:06:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 00:06:21] Further information can be found at the LHC@home message board.
[2026-02-27 00:06:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 00:06:21] Checking for apptainer binary...
[2026-02-27 00:06:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 00:06:21] Running /usr/bin/apptainer --version
[2026-02-27 00:06:21] apptainer version 1.4.1-1.1
[2026-02-27 00:06:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 00:06:21] magicA246a
[2026-02-27 00:06:21] apptainer works
[2026-02-27 00:06:21] Set ATHENA_PROC_NUMBER=3
[2026-02-27 00:06:21] Set ATHENA_CORE_NUMBER=3
[2026-02-27 00:06:21] Starting ATLAS job with PandaID=7030546792
[2026-02-27 00:06:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 01:41:53]  *** The last 200 lines of the pilot log: ***
[2026-02-27 01:41:53] 2026-02-27 00:41:21,130 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 01:41:53] 2026-02-27 00:41:21,130 | INFO     | job 7030546792 has completed (purged errors)
[2026-02-27 01:41:53] 2026-02-27 00:41:21,130 | INFO     | overall cleanup function is called
[2026-02-27 01:41:53] 2026-02-27 00:41:22,137 | INFO     | --- collectZombieJob: --- 10, [443256]
[2026-02-27 01:41:53] 2026-02-27 00:41:22,137 | INFO     | zombie collector waiting for pid 443256
[2026-02-27 01:41:53] 2026-02-27 00:41:22,137 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 01:41:53] 2026-02-27 00:41:22,137 | INFO     | collected zombie processes
[2026-02-27 01:41:53] 2026-02-27 00:41:22,137 | INFO     | will attempt to kill all subprocesses of pid=443256
[2026-02-27 01:41:53] 2026-02-27 00:41:22,179 | INFO     | process IDs to be killed: [443256] (in reverse order)
[2026-02-27 01:41:53] 2026-02-27 00:41:22,206 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 01:41:53] 2026-02-27 00:41:22,206 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 01:41:53] 2026-02-27 00:41:22,207 | INFO     | did not find any defunct processes belonging to 443256
[2026-02-27 01:41:53] 2026-02-27 00:41:22,208 | INFO     | did not find any defunct processes belonging to 443256
[2026-02-27 01:41:53] 2026-02-27 00:41:22,208 | INFO     | ready for new job
[2026-02-27 01:41:53] 2026-02-27 00:41:22,208 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 01:41:53] 2026-02-27 00:41:22,209 | INFO     | **************************************
[2026-02-27 01:41:53] 2026-02-27 00:41:22,209 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 01:41:53] 2026-02-27 00:41:22,209 | INFO     | **************************************
[2026-02-27 01:41:53] 2026-02-27 00:41:22,209 | INFO     | 
[2026-02-27 01:41:53] 2026-02-27 00:41:22,210 | INFO     | architecture information:
[2026-02-27 01:41:53] 2026-02-27 00:41:22,210 | INFO     | executing command: cat /etc/os-release
[2026-02-27 01:41:53] 2026-02-27 00:41:22,219 | INFO     | cat /etc/os-release:
[2026-02-27 01:41:53] NAME="CentOS Linux"
[2026-02-27 01:41:53] VERSION="7 (Core)"
[2026-02-27 01:41:53] ID="centos"
[2026-02-27 01:41:53] ID_LIKE="rhel fedora"
[2026-02-27 01:41:53] VERSION_ID="7"
[2026-02-27 01:41:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 01:41:53] ANSI_COLOR="0;31"
[2026-02-27 01:41:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 01:41:53] HOME_URL="https://www.centos.org/"
[2026-02-27 01:41:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 01:41:53] 
[2026-02-27 01:41:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 01:41:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 01:41:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 01:41:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 01:41:53] 
[2026-02-27 01:41:53] 2026-02-27 00:41:22,219 | INFO     | **************************************
[2026-02-27 01:41:53] 2026-02-27 00:41:22,723 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-27 01:41:53] 2026-02-27 00:41:22,737 | INFO     | sufficient remaining disk space (275229179904 B)
[2026-02-27 01:41:53] 2026-02-27 00:41:22,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 01:41:53] 2026-02-27 00:41:22,737 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 01:41:53] 2026-02-27 00:41:22,737 | INFO     | update_server=False
[2026-02-27 01:41:53] 2026-02-27 00:41:22,737 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 01:41:53] 2026-02-27 00:41:22,737 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 01:41:53] 2026-02-27 00:41:22,737 | INFO     | aborting loop
[2026-02-27 01:41:53] 2026-02-27 00:41:22,737 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 01:41:53] 2026-02-27 00:41:22,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 01:41:53] 2026-02-27 00:41:22,738 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 01:41:53] 2026-02-27 00:41:23,135 | INFO     | all data control threads have been joined
[2026-02-27 01:41:53] 2026-02-27 00:41:23,338 | INFO     | all job control threads have been joined
[2026-02-27 01:41:53] 2026-02-27 00:41:23,743 | INFO     | [job] retrieve thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:23,743 | INFO     | [job] job monitor thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:23,744 | INFO     | [job] queue monitor thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:24,141 | INFO     | [data] control thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:24,217 | INFO     | all payload control threads have been joined
[2026-02-27 01:41:53] 2026-02-27 00:41:24,343 | INFO     | [job] control thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:24,442 | INFO     | [job] validate thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:24,571 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:24,657 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:24,702 | INFO     | [data] copytool_in thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:24,724 | INFO     | [payload] failed_post thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:24,743 | INFO     | [data] copytool_out thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:24,824 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:25,222 | INFO     | [payload] control thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:25,255 | INFO     | [payload] validate_post thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:26,744 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:33,317 | INFO     | job.realtimelogging is not enabled
[2026-02-27 01:41:53] 2026-02-27 00:41:34,323 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 01:41:53] 2026-02-27 00:41:37,897 | INFO     | [monitor] cgroup control has ended
[2026-02-27 01:41:53] 2026-02-27 00:41:38,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140138901591872)>', '<ExcThread(monitor, started 140138113910528)>']
[2026-02-27 01:41:53] 2026-02-27 00:41:43,950 | INFO     | all workflow threads have been joined
[2026-02-27 01:41:53] 2026-02-27 00:41:43,951 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 01:41:53] 2026-02-27 00:41:43,951 | INFO     | traces error code: 0
[2026-02-27 01:41:53] 2026-02-27 00:41:43,951 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 01:41:53] 2026-02-27 00:41:53,697 | INFO     | PID=438827 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-27 01:41:53] 2026-02-27 00:41:53,698 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 01:41:53] 2026-02-27 00:41:53,698 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 01:41:53] 2026-02-27 00:41:53,698 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 01:41:53] 2026-02-27 00:41:53,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 01:41:53] 2026-02-27 00:41:53,698 | INFO     | [monitor] control thread has ended
[2026-02-27 01:41:53] 2026-02-27 00:41:53,746 [wrapper] ==== pilot stdout END ====
[2026-02-27 01:41:53] 2026-02-27 00:41:53,749 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 01:41:53] 2026-02-27 00:41:53,752 [wrapper] pilotpid: 438827
[2026-02-27 01:41:53] 2026-02-27 00:41:53,754 [wrapper] Pilot exit status: 0
[2026-02-27 01:41:53] 2026-02-27 00:41:53,762 [wrapper] pandaids: 7030546792
[2026-02-27 01:41:53] 2026-02-27 00:41:53,779 [wrapper] cleanup supervisor_pilot  448794 438828
[2026-02-27 01:41:53] 2026-02-27 00:41:53,782 [wrapper] Test setup, not cleaning
[2026-02-27 01:41:53] 2026-02-27 00:41:53,784 [wrapper] apfmon messages muted
[2026-02-27 01:41:53] 2026-02-27 00:41:53,787 [wrapper] ==== wrapper stdout END ====
[2026-02-27 01:41:53] 2026-02-27 00:41:53,790 [wrapper] ==== wrapper stderr END ====
[2026-02-27 01:41:53]  *** Error codes and diagnostics ***
[2026-02-27 01:41:53]     "exeErrorCode": 0,
[2026-02-27 01:41:53]     "exeErrorDiag": "",
[2026-02-27 01:41:53]     "pilotErrorCode": 0,
[2026-02-27 01:41:53]     "pilotErrorDiag": "",
[2026-02-27 01:41:53]  *** Listing of results directory ***
[2026-02-27 01:41:53] total 490180
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc    584627 Feb 26 08:13 pilot3.tar.gz
[2026-02-27 01:41:53] -rwx------ 1 boinc boinc     36322 Feb 26 08:13 runpilot2-wrapper.sh
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc      5111 Feb 26 08:13 queuedata.json
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc       100 Feb 27 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 01:41:53] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 00:06 run_atlas
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc       105 Feb 27 00:06 job.xml
[2026-02-27 01:41:53] -rw-r--r-- 2 boinc boinc 283631240 Feb 27 00:06 EVNT.48220117._000023.pool.root.1
[2026-02-27 01:41:53] -rw-r--r-- 2 boinc boinc    597963 Feb 27 00:06 input.tar.gz
[2026-02-27 01:41:53] -rw-r--r-- 2 boinc boinc     15845 Feb 27 00:06 start_atlas.sh
[2026-02-27 01:41:53] drwxrwx--x 2 boinc boinc      4096 Feb 27 00:06 shared
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc         0 Feb 27 00:06 boinc_setup_complete
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc      6448 Feb 27 00:06 init_data.xml
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc         0 Feb 27 00:06 boinc_lockfile
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc      2567 Feb 27 00:06 pandaJob.out
[2026-02-27 01:41:53] -rw------- 1 boinc boinc    998489 Feb 27 00:06 agis_schedconf.cvmfs.json
[2026-02-27 01:41:53] -rw------- 1 boinc boinc   1513015 Feb 27 00:06 agis_ddmendpoints.agis.ALL.json
[2026-02-27 01:41:53] -rw------- 1 boinc boinc       427 Feb 27 00:06 workernode_map.json
[2026-02-27 01:41:53] drwx------ 5 boinc boinc      4096 Feb 27 00:06 pilot3
[2026-02-27 01:41:53] -rw------- 1 boinc boinc        95 Feb 27 01:40 pilot_heartbeat.json
[2026-02-27 01:41:53] -rw------- 1 boinc boinc 212253360 Feb 27 01:40 HITS.48838447._000551.pool.root.1
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc       529 Feb 27 01:41 boinc_task_state.xml
[2026-02-27 01:41:53] -rw------- 1 boinc boinc      1034 Feb 27 01:41 memory_monitor_summary.json
[2026-02-27 01:41:53] -rw------- 1 boinc boinc    249137 Feb 27 01:41 log.48838447._000551.job.log.tgz.1
[2026-02-27 01:41:53] -rw------- 1 boinc boinc      6301 Feb 27 01:41 heartbeat.json
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc        27 Feb 27 01:41 wrapper_checkpoint.txt
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc      8192 Feb 27 01:41 boinc_mmap_file
[2026-02-27 01:41:53] -rw------- 1 boinc boinc       746 Feb 27 01:41 pilotlog.txt
[2026-02-27 01:41:53] -rw------- 1 boinc boinc    827114 Feb 27 01:41 log.48838447._000551.job.log.1
[2026-02-27 01:41:53] -rw------- 1 boinc boinc       357 Feb 27 01:41 output.list
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc       620 Feb 27 01:41 runtime_log
[2026-02-27 01:41:53] -rw------- 1 boinc boinc   1095680 Feb 27 01:41 result.tar.gz
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc      8916 Feb 27 01:41 runtime_log.err
[2026-02-27 01:41:53] -rw------- 1 boinc boinc       661 Feb 27 01:41 1zOMDmmjkF9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmMK2KDmyz6BJo.diag
[2026-02-27 01:41:53] -rw-r--r-- 1 boinc boinc     10990 Feb 27 01:41 stderr.txt
[2026-02-27 01:41:53] HITS file was successfully produced:
[2026-02-27 01:41:53] -rw------- 1 boinc boinc 212253360 Feb 27 01:40 shared/HITS.pool.root.1
[2026-02-27 01:41:53]  *** Contents of shared directory: ***
[2026-02-27 01:41:53] total 485940
[2026-02-27 01:41:53] -rw-r--r-- 2 boinc boinc 283631240 Feb 27 00:06 ATLAS.root_0
[2026-02-27 01:41:53] -rw-r--r-- 2 boinc boinc    597963 Feb 27 00:06 input.tar.gz
[2026-02-27 01:41:53] -rw-r--r-- 2 boinc boinc     15845 Feb 27 00:06 start_atlas.sh
[2026-02-27 01:41:53] -rw------- 1 boinc boinc 212253360 Feb 27 01:40 HITS.pool.root.1
[2026-02-27 01:41:53] -rw------- 1 boinc boinc   1095680 Feb 27 01:41 result.tar.gz
01:41:55 (434765): run_atlas exited; CPU time 16357.789295
01:41:55 (434765): called boinc_finish(0)

</stderr_txt>
]]>

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