Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
22:56:41 (1753915): wrapper (7.7.26015): starting
22:56:41 (1753915): wrapper: running run_atlas (--nthreads 4)
[2026-02-27 22:56:41] Arguments: --nthreads 4
[2026-02-27 22:56:41] Threads: 4
[2026-02-27 22:56:41] Checking for CVMFS
[2026-02-27 22:56:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 22:56:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 22:56:41] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 22:56:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 22:56:41] 2.13.3.0 11582 17172 45748 156707 3 50 30373077 33554432 0 130560 0 6866564 99.985 600613 284 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-02-27 22:56:41] CVMFS is ok
[2026-02-27 22:56:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 22:56:41] Checking for apptainer binary...
[2026-02-27 22:56:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 22:56:41] Running /usr/bin/apptainer --version
[2026-02-27 22:56:41] apptainer version 1.4.5
[2026-02-27 22:56:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 22:56:41] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-02-27 22:56:41] apptainer works
[2026-02-27 22:56:41] Set ATHENA_PROC_NUMBER=4
[2026-02-27 22:56:41] Set ATHENA_CORE_NUMBER=4
[2026-02-27 22:56:41] Starting ATLAS job with PandaID=7030485011
[2026-02-27 22:56:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 23:53:14]  *** The last 200 lines of the pilot log: ***
[2026-02-27 23:53:14]  is_altstaged=None
[2026-02-27 23:53:14]  is_tar=False
[2026-02-27 23:53:14]  lfn=log.48842404._000012.job.log.tgz.1
[2026-02-27 23:53:14]  mtime=0
[2026-02-27 23:53:14]  protocol_id=None
[2026-02-27 23:53:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-27 23:53:14]  replicas=None
[2026-02-27 23:53:14]  scope=mc23_13p6TeV
[2026-02-27 23:53:14]  status=None
[2026-02-27 23:53:14]  status_code=0
[2026-02-27 23:53:14]  storage_token=
[2026-02-27 23:53:14]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7030485011/log.48842404._000012.job.log.tgz.1
[2026-02-27 23:53:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/fc/log.48842404._000012.job.log.tgz.1
[2026-02-27 23:53:14]  workdir=None
[2026-02-27 23:53:14] ]
[2026-02-27 23:53:14] 2026-02-27 21:52:38,456 | INFO     | transferring file log.48842404._000012.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7030485011/log.48842404._000012.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-02-27 23:53:14] 2026-02-27 21:52:38,456 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7030485011/log.48842404._000012.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48842404._000012.job
[2026-02-27 23:53:14] 2026-02-27 21:52:38,463 | INFO     | adding to output.list: log.48842404._000012.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/fc/log.48842404._000012.job.log.tg
[2026-02-27 23:53:14] 2026-02-27 21:52:38,464 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-27 23:53:14] 2026-02-27 21:52:38,464 | INFO     | summary of transferred files:
[2026-02-27 23:53:14] 2026-02-27 21:52:38,464 | INFO     |  -- lfn=log.48842404._000012.job.log.tgz.1, status_code=0, status=transferred
[2026-02-27 23:53:14] 2026-02-27 21:52:38,464 | INFO     | stage-out finished correctly
[2026-02-27 23:53:14] 2026-02-27 21:52:39,351 | INFO     | time since job start (3350s) is within the limit (349056.0s)
[2026-02-27 23:53:14] 2026-02-27 21:52:39,955 | INFO     | monitor loop #257: job 0:7030485011 is in state 'finished'
[2026-02-27 23:53:14] 2026-02-27 21:52:39,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-27 23:53:14] 2026-02-27 21:52:40,946 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-27 23:53:14] 2026-02-27 21:52:41,356 | INFO     | time since job start (3352s) is within the limit (349056.0s)
[2026-02-27 23:53:14] 2026-02-27 21:52:42,463 | INFO     | monitor loop #258: job 0:7030485011 is in state 'finished'
[2026-02-27 23:53:14] 2026-02-27 21:52:42,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-27 23:53:14] 2026-02-27 21:52:42,982 | INFO     | job 7030485011 has state=finished
[2026-02-27 23:53:14] 2026-02-27 21:52:42,983 | INFO     | preparing for final server update for job 7030485011 in state='finished'
[2026-02-27 23:53:14] 2026-02-27 21:52:42,983 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7030485011/jobReport.json
[2026-02-27 23:53:14] 2026-02-27 21:52:42,984 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-02-27 23:53:14] 2026-02-27 21:52:42,984 | INFO     | this job has now completed (state=finished)
[2026-02-27 23:53:14] 2026-02-27 21:52:42,984 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-27 23:53:14] 2026-02-27 21:52:42,984 | INFO     | log transfer has been attempted: DONE
[2026-02-27 23:53:14] 2026-02-27 21:52:42,984 | INFO     | job 7030485011 has finished - writing final server update
[2026-02-27 23:53:14] 2026-02-27 21:52:42,984 | INFO     | total number of processed events: 400 (read)
[2026-02-27 23:53:14] 2026-02-27 21:52:42,986 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7030485011/memory_monitor_summary.json (trf name=prmon)
[2026-02-27 23:53:14] 2026-02-27 21:52:42,986 | INFO     | extracted standard info from prmon json
[2026-02-27 23:53:14] 2026-02-27 21:52:42,986 | INFO     | extracted standard memory fields from prmon json
[2026-02-27 23:53:14] 2026-02-27 21:52:42,986 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-27 23:53:14] 2026-02-27 21:52:42,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-27 23:53:14] 2026-02-27 21:52:42,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | fitting pss+swap vs Time
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | sum of square deviations: 34277852.0
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | sum of deviations: -5637321496.5
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | mean x: 1772227562.5
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | mean y: 2490602.7708333335
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | intersect: 291462309461.0542
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | chi2: 0.1086825226194896
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | current memory leak: -164.46 B/s (using 48 data points, chi2=0.11)
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | could have reported an average CPU frequency of 3383 MHz (5 samples)
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | ..............................
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | . Timing measurements:
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | . get job = 0 s
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | . initial setup = 3 s
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | . payload setup = 2 s
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | . stage-in = 0 s
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | . payload execution = 3332 s
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | . stage-out = 0 s
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | . log creation = 0 s
[2026-02-27 23:53:14] 2026-02-27 21:52:42,987 | INFO     | ..............................
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | 
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | job summary report
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | --------------------------------------------------
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | PanDA job id: 7030485011
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | task id: 48842404
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | errors: (none)
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | pilot state: finished 
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | transexitcode: 0
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | exeerrorcode: 0
[2026-02-27 23:53:14] 2026-02-27 21:52:43,013 | INFO     | exeerrordiag: 
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | exitcode: 0
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | exitmsg: OK
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | cpuconsumptiontime: 12650 s
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | nevents: 400
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | neventsw: 0
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | pid: 1763017
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | pgrp: 1763017
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | corecount: 4
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | event service: False
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | sizes: {0: 2282343, 11: 2282343, 3338: 2317109, 3341: 2317109, 3343: 2317335}
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | --------------------------------------------------
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | 
[2026-02-27 23:53:14] 2026-02-27 21:52:43,014 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-02-27 23:53:14] 2026-02-27 21:52:43,022 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,022 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,022 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,022 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,022 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,022 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,022 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | job 7030485011 has completed (purged errors)
[2026-02-27 23:53:14] 2026-02-27 21:52:43,023 | INFO     | overall cleanup function is called
[2026-02-27 23:53:14] 2026-02-27 21:52:44,029 | INFO     | --- collectZombieJob: --- 10, [1763017]
[2026-02-27 23:53:14] 2026-02-27 21:52:44,029 | INFO     | zombie collector waiting for pid 1763017
[2026-02-27 23:53:14] 2026-02-27 21:52:44,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 23:53:14] 2026-02-27 21:52:44,029 | INFO     | collected zombie processes
[2026-02-27 23:53:14] 2026-02-27 21:52:44,029 | INFO     | will attempt to kill all subprocesses of pid=1763017
[2026-02-27 23:53:14] 2026-02-27 21:52:44,122 | INFO     | process IDs to be killed: [1763017] (in reverse order)
[2026-02-27 23:53:14] 2026-02-27 21:52:44,153 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 23:53:14] 2026-02-27 21:52:44,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 23:53:14] 2026-02-27 21:52:44,155 | INFO     | did not find any defunct processes belonging to 1763017
[2026-02-27 23:53:14] 2026-02-27 21:52:44,157 | INFO     | did not find any defunct processes belonging to 1763017
[2026-02-27 23:53:14] 2026-02-27 21:52:44,157 | INFO     | ready for new job
[2026-02-27 23:53:14] 2026-02-27 21:52:44,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 23:53:14] 2026-02-27 21:52:44,158 | INFO     | **************************************
[2026-02-27 23:53:14] 2026-02-27 21:52:44,158 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 23:53:14] 2026-02-27 21:52:44,158 | INFO     | **************************************
[2026-02-27 23:53:14] 2026-02-27 21:52:44,158 | INFO     | 
[2026-02-27 23:53:14] 2026-02-27 21:52:44,158 | INFO     | architecture information:
[2026-02-27 23:53:14] 2026-02-27 21:52:44,158 | INFO     | executing command: cat /etc/os-release
[2026-02-27 23:53:14] 2026-02-27 21:52:44,163 | INFO     | cat /etc/os-release:
[2026-02-27 23:53:14] NAME="CentOS Linux"
[2026-02-27 23:53:14] VERSION="7 (Core)"
[2026-02-27 23:53:14] ID="centos"
[2026-02-27 23:53:14] ID_LIKE="rhel fedora"
[2026-02-27 23:53:14] VERSION_ID="7"
[2026-02-27 23:53:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 23:53:14] ANSI_COLOR="0;31"
[2026-02-27 23:53:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 23:53:14] HOME_URL="https://www.centos.org/"
[2026-02-27 23:53:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 23:53:14] 
[2026-02-27 23:53:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 23:53:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 23:53:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 23:53:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 23:53:14] 
[2026-02-27 23:53:14] 2026-02-27 21:52:44,164 | INFO     | **************************************
[2026-02-27 23:53:14] 2026-02-27 21:52:44,666 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-02-27 23:53:14] 2026-02-27 21:52:44,673 | INFO     | sufficient remaining disk space (60642295808 B)
[2026-02-27 23:53:14] 2026-02-27 21:52:44,674 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 23:53:14] 2026-02-27 21:52:44,674 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 23:53:14] 2026-02-27 21:52:44,674 | INFO     | update_server=False
[2026-02-27 23:53:14] 2026-02-27 21:52:44,674 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 23:53:14] 2026-02-27 21:52:44,674 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 23:53:14] 2026-02-27 21:52:44,674 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 23:53:14] 2026-02-27 21:52:44,845 | INFO     | all payload control threads have been joined
[2026-02-27 23:53:14] 2026-02-27 21:52:44,966 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-27 23:53:14] 2026-02-27 21:52:44,967 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-27 23:53:14] 2026-02-27 21:52:44,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 23:53:14] 2026-02-27 21:52:44,967 | INFO     | will abort loop
[2026-02-27 23:53:14] 2026-02-27 21:52:45,025 | INFO     | job.realtimelogging is not enabled
[2026-02-27 23:53:14] 2026-02-27 21:52:45,637 | INFO     | all data control threads have been joined
[2026-02-27 23:53:14] 2026-02-27 21:52:45,677 | INFO     | [job] retrieve thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:45,679 | INFO     | [job] queue monitor thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:45,850 | INFO     | [payload] control thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:45,916 | INFO     | [payload] failed_post thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:45,971 | INFO     | [job] job monitor thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:46,029 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:46,140 | INFO     | all job control threads have been joined
[2026-02-27 23:53:14] 2026-02-27 21:52:46,257 | INFO     | [job] validate thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:46,365 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:46,443 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:46,457 | INFO     | [data] copytool_in thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:46,638 | INFO     | [data] control thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:46,678 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:46,679 | INFO     | [data] copytool_out thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:46,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 23:53:14] 2026-02-27 21:52:47,145 | INFO     | [job] control thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:47,207 | INFO     | [payload] validate_post thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:50,983 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 23:53:14] 2026-02-27 21:52:53,253 | INFO     | [monitor] cgroup control has ended
[2026-02-27 23:53:14] 2026-02-27 21:52:53,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361926121280)>', '<ExcThread(monitor, started 140361057949440)>']
[2026-02-27 23:53:14] 2026-02-27 21:52:58,808 | INFO     | all workflow threads have been joined
[2026-02-27 23:53:14] 2026-02-27 21:52:58,808 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 23:53:14] 2026-02-27 21:52:58,808 | INFO     | traces error code: 0
[2026-02-27 23:53:14] 2026-02-27 21:52:58,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 23:53:14] 2026-02-27 21:53:14,517 | INFO     | PID=1757862 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-27 23:53:14] 2026-02-27 21:53:14,517 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 23:53:14] 2026-02-27 21:53:14,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 23:53:14] 2026-02-27 21:53:14,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 23:53:14] 2026-02-27 21:53:14,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 23:53:14] 2026-02-27 21:53:14,517 | INFO     | [monitor] control thread has ended
[2026-02-27 23:53:14] 2026-02-27 21:53:14,560 [wrapper] ==== pilot stdout END ====
[2026-02-27 23:53:14] 2026-02-27 21:53:14,562 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 23:53:14] 2026-02-27 21:53:14,563 [wrapper] pilotpid: 1757862
[2026-02-27 23:53:14] 2026-02-27 21:53:14,565 [wrapper] Pilot exit status: 0
[2026-02-27 23:53:14] 2026-02-27 21:53:14,570 [wrapper] pandaids: 7030485011
[2026-02-27 23:53:14] 2026-02-27 21:53:14,591 [wrapper] cleanup supervisor_pilot 1928790 1757863
[2026-02-27 23:53:14] 2026-02-27 21:53:14,592 [wrapper] Test setup, not cleaning
[2026-02-27 23:53:14] 2026-02-27 21:53:14,594 [wrapper] apfmon messages muted
[2026-02-27 23:53:14] 2026-02-27 21:53:14,595 [wrapper] ==== wrapper stdout END ====
[2026-02-27 23:53:14] 2026-02-27 21:53:14,597 [wrapper] ==== wrapper stderr END ====
[2026-02-27 23:53:14]  *** Error codes and diagnostics ***
[2026-02-27 23:53:14]     "exeErrorCode": 0,
[2026-02-27 23:53:14]     "exeErrorDiag": "",
[2026-02-27 23:53:14]     "pilotErrorCode": 0,
[2026-02-27 23:53:14]     "pilotErrorDiag": "",
[2026-02-27 23:53:14]  *** Listing of results directory ***
[2026-02-27 23:53:14] total 419536
[2026-02-27 23:53:14] -rw-r--r-- 1 ek ek    584627 Feb 26 06:42 pilot3.tar.gz
[2026-02-27 23:53:14] -rwx------ 1 ek ek     36322 Feb 26 06:45 runpilot2-wrapper.sh
[2026-02-27 23:53:14] -rw-r--r-- 1 ek ek      5111 Feb 26 06:47 queuedata.json
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek       100 Feb 27 22:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 23:53:14] -rwxr-xr-x 1 ek ek      7986 Feb 27 22:56 run_atlas
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek       105 Feb 27 22:56 job.xml
[2026-02-27 23:53:14] -rw-r--r-- 2 ek ek 254844726 Feb 27 22:56 EVNT.48447954._000001.pool.root.1
[2026-02-27 23:53:14] drwxrwx--x 2 ek ek      4096 Feb 27 22:56 shared
[2026-02-27 23:53:14] -rw-r--r-- 2 ek ek    597971 Feb 27 22:56 input.tar.gz
[2026-02-27 23:53:14] -rw-r--r-- 2 ek ek     15845 Feb 27 22:56 start_atlas.sh
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek         0 Feb 27 22:56 boinc_setup_complete
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek      9840 Feb 27 22:56 init_data.xml
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek         0 Feb 27 22:56 boinc_lockfile
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek      2616 Feb 27 22:56 pandaJob.out
[2026-02-27 23:53:14] -rw------- 1 ek ek        50 Feb 27 22:56 setup.sh.local
[2026-02-27 23:53:14] -rw------- 1 ek ek    998790 Feb 27 22:56 agis_schedconf.cvmfs.json
[2026-02-27 23:53:14] -rw------- 1 ek ek   1513015 Feb 27 22:56 agis_ddmendpoints.agis.ALL.json
[2026-02-27 23:53:14] -rw------- 1 ek ek       432 Feb 27 22:56 workernode_map.json
[2026-02-27 23:53:14] drwx------ 5 ek ek      4096 Feb 27 22:56 pilot3
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek       529 Feb 27 23:52 boinc_task_state.xml
[2026-02-27 23:53:14] -rw------- 1 ek ek 169320985 Feb 27 23:52 HITS.48842404._000012.pool.root.1
[2026-02-27 23:53:14] -rw------- 1 ek ek      1041 Feb 27 23:52 memory_monitor_summary.json
[2026-02-27 23:53:14] -rw------- 1 ek ek    247109 Feb 27 23:52 log.48842404._000012.job.log.tgz.1
[2026-02-27 23:53:14] -rw------- 1 ek ek      6344 Feb 27 23:52 heartbeat.json
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek      8192 Feb 27 23:52 boinc_mmap_file
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek        27 Feb 27 23:52 wrapper_checkpoint.txt
[2026-02-27 23:53:14] -rw------- 1 ek ek       747 Feb 27 23:53 pilotlog.txt
[2026-02-27 23:53:14] -rw------- 1 ek ek        95 Feb 27 23:53 pilot_heartbeat.json
[2026-02-27 23:53:14] -rw------- 1 ek ek    507855 Feb 27 23:53 log.48842404._000012.job.log.1
[2026-02-27 23:53:14] -rw------- 1 ek ek       357 Feb 27 23:53 output.list
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek       620 Feb 27 23:53 runtime_log
[2026-02-27 23:53:14] -rw------- 1 ek ek    768000 Feb 27 23:53 result.tar.gz
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek      9501 Feb 27 23:53 runtime_log.err
[2026-02-27 23:53:14] -rw------- 1 ek ek       664 Feb 27 23:53 0vmNDm0QiF9n9Rq4apOajLDm4fhM0noT9bVooX4SDm3R0KDmm89EWo.diag
[2026-02-27 23:53:14] -rw-rw-r-- 1 ek ek     21291 Feb 27 23:53 stderr.txt
[2026-02-27 23:53:14] HITS file was successfully produced:
[2026-02-27 23:53:14] -rw------- 1 ek ek 169320985 Feb 27 23:52 shared/HITS.pool.root.1
[2026-02-27 23:53:14]  *** Contents of shared directory: ***
[2026-02-27 23:53:14] total 415588
[2026-02-27 23:53:14] -rw-r--r-- 2 ek ek 254844726 Feb 27 22:56 ATLAS.root_0
[2026-02-27 23:53:14] -rw-r--r-- 2 ek ek    597971 Feb 27 22:56 input.tar.gz
[2026-02-27 23:53:14] -rw-r--r-- 2 ek ek     15845 Feb 27 22:56 start_atlas.sh
[2026-02-27 23:53:14] -rw------- 1 ek ek 169320985 Feb 27 23:52 HITS.pool.root.1
[2026-02-27 23:53:14] -rw------- 1 ek ek    768000 Feb 27 23:53 result.tar.gz
23:53:15 (1753915): run_atlas exited; CPU time 12681.463061
23:53:15 (1753915): called boinc_finish(0)

</stderr_txt>
]]>

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