Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:15:15 (85850): wrapper (7.7.26015): starting
02:15:15 (85850): wrapper: running run_atlas (--nthreads 3)
[2026-02-27 02:15:15] Arguments: --nthreads 3
[2026-02-27 02:15:15] Threads: 3
[2026-02-27 02:15:15] Checking for CVMFS
[2026-02-27 02:15:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 02:15:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 02:15:16] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 02:15:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 02:15:16] 2.9.2.0 2903 501 63848 156677 3 8 26743497 36864000 0 130560 0 238334 99.921 162983 2007 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-27 02:15:16] CVMFS is ok
[2026-02-27 02:15:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-27 02:15:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-27 02:15:16] Further information can be found at the LHC@home message board.
[2026-02-27 02:15:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 02:15:16] Checking for apptainer binary...
[2026-02-27 02:15:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 02:15:16] Running /usr/bin/apptainer --version
[2026-02-27 02:15:16] apptainer version 1.4.1-1.1
[2026-02-27 02:15:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 02:15:16] belleA253
[2026-02-27 02:15:16] apptainer works
[2026-02-27 02:15:16] Set ATHENA_PROC_NUMBER=3
[2026-02-27 02:15:16] Set ATHENA_CORE_NUMBER=3
[2026-02-27 02:15:16] Starting ATLAS job with PandaID=7030251839
[2026-02-27 02:15:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 03:51:44]  *** The last 200 lines of the pilot log: ***
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,321 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,322 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 03:51:44] 2026-02-27 02:51:12,322 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,322 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 03:51:44] 2026-02-27 02:51:12,322 | INFO     | job 7030251839 has completed (purged errors)
[2026-02-27 03:51:44] 2026-02-27 02:51:12,322 | INFO     | overall cleanup function is called
[2026-02-27 03:51:44] 2026-02-27 02:51:13,328 | INFO     | --- collectZombieJob: --- 10, [94334]
[2026-02-27 03:51:44] 2026-02-27 02:51:13,329 | INFO     | zombie collector waiting for pid 94334
[2026-02-27 03:51:44] 2026-02-27 02:51:13,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 03:51:44] 2026-02-27 02:51:13,329 | INFO     | collected zombie processes
[2026-02-27 03:51:44] 2026-02-27 02:51:13,329 | INFO     | will attempt to kill all subprocesses of pid=94334
[2026-02-27 03:51:44] 2026-02-27 02:51:13,370 | INFO     | process IDs to be killed: [94334] (in reverse order)
[2026-02-27 03:51:44] 2026-02-27 02:51:13,396 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 03:51:44] 2026-02-27 02:51:13,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 03:51:44] 2026-02-27 02:51:13,398 | INFO     | did not find any defunct processes belonging to 94334
[2026-02-27 03:51:44] 2026-02-27 02:51:13,399 | INFO     | did not find any defunct processes belonging to 94334
[2026-02-27 03:51:44] 2026-02-27 02:51:13,399 | INFO     | ready for new job
[2026-02-27 03:51:44] 2026-02-27 02:51:13,399 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 03:51:44] 2026-02-27 02:51:13,399 | INFO     | **************************************
[2026-02-27 03:51:44] 2026-02-27 02:51:13,399 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 03:51:44] 2026-02-27 02:51:13,399 | INFO     | **************************************
[2026-02-27 03:51:44] 2026-02-27 02:51:13,399 | INFO     | 
[2026-02-27 03:51:44] 2026-02-27 02:51:13,400 | INFO     | architecture information:
[2026-02-27 03:51:44] 2026-02-27 02:51:13,400 | INFO     | executing command: cat /etc/os-release
[2026-02-27 03:51:44] 2026-02-27 02:51:13,409 | INFO     | cat /etc/os-release:
[2026-02-27 03:51:44] NAME="CentOS Linux"
[2026-02-27 03:51:44] VERSION="7 (Core)"
[2026-02-27 03:51:44] ID="centos"
[2026-02-27 03:51:44] ID_LIKE="rhel fedora"
[2026-02-27 03:51:44] VERSION_ID="7"
[2026-02-27 03:51:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 03:51:44] ANSI_COLOR="0;31"
[2026-02-27 03:51:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 03:51:44] HOME_URL="https://www.centos.org/"
[2026-02-27 03:51:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 03:51:44] 
[2026-02-27 03:51:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 03:51:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 03:51:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 03:51:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 03:51:44] 
[2026-02-27 03:51:44] 2026-02-27 02:51:13,409 | INFO     | **************************************
[2026-02-27 03:51:44] 2026-02-27 02:51:13,913 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-27 03:51:44] 2026-02-27 02:51:13,926 | INFO     | sufficient remaining disk space (377313296384 B)
[2026-02-27 03:51:44] 2026-02-27 02:51:13,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 03:51:44] 2026-02-27 02:51:13,926 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 03:51:44] 2026-02-27 02:51:13,926 | INFO     | update_server=False
[2026-02-27 03:51:44] 2026-02-27 02:51:13,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 03:51:44] 2026-02-27 02:51:13,927 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 03:51:44] 2026-02-27 02:51:14,302 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-27 03:51:44] 2026-02-27 02:51:14,303 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-27 03:51:44] 2026-02-27 02:51:14,303 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 03:51:44] 2026-02-27 02:51:14,303 | INFO     | will abort loop
[2026-02-27 03:51:44] 2026-02-27 02:51:14,385 | INFO     | all data control threads have been joined
[2026-02-27 03:51:44] 2026-02-27 02:51:14,504 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 03:51:44] 2026-02-27 02:51:14,507 | INFO     | all job control threads have been joined
[2026-02-27 03:51:44] 2026-02-27 02:51:14,770 | INFO     | all payload control threads have been joined
[2026-02-27 03:51:44] 2026-02-27 02:51:14,932 | INFO     | [job] retrieve thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:14,933 | INFO     | [job] queue monitor thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:15,029 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:15,124 | INFO     | [data] copytool_in thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:15,163 | INFO     | job.realtimelogging is not enabled
[2026-02-27 03:51:44] 2026-02-27 02:51:15,309 | INFO     | [job] job monitor thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:15,391 | INFO     | [data] control thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:15,512 | INFO     | [job] control thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:15,581 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 03:51:44] 2026-02-27 02:51:15,610 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:15,626 | INFO     | [payload] failed_post thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:15,776 | INFO     | [payload] control thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:16,104 | INFO     | [payload] validate_post thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:16,168 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:16,428 | INFO     | [job] validate thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:16,429 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:16,510 | INFO     | [data] copytool_out thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:19,589 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 03:51:44] 2026-02-27 02:51:32,468 | INFO     | [monitor] cgroup control has ended
[2026-02-27 03:51:44] 2026-02-27 02:51:33,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139896955819840)>', '<ExcThread(monitor, started 139895792195328)>']
[2026-02-27 03:51:44] 2026-02-27 02:51:38,502 | INFO     | all workflow threads have been joined
[2026-02-27 03:51:44] 2026-02-27 02:51:38,502 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 03:51:44] 2026-02-27 02:51:38,503 | INFO     | traces error code: 0
[2026-02-27 03:51:44] 2026-02-27 02:51:38,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 03:51:44] 2026-02-27 02:51:43,966 | INFO     | PID=89897 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-27 03:51:44] 2026-02-27 02:51:43,967 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 03:51:44] 2026-02-27 02:51:43,967 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 03:51:44] 2026-02-27 02:51:43,967 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 03:51:44] 2026-02-27 02:51:43,967 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 03:51:44] 2026-02-27 02:51:43,967 | INFO     | [monitor] control thread has ended
[2026-02-27 03:51:44] 2026-02-27 02:51:44,013 [wrapper] ==== pilot stdout END ====
[2026-02-27 03:51:44] 2026-02-27 02:51:44,015 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 03:51:44] 2026-02-27 02:51:44,018 [wrapper] pilotpid: 89897
[2026-02-27 03:51:44] 2026-02-27 02:51:44,020 [wrapper] Pilot exit status: 0
[2026-02-27 03:51:44] 2026-02-27 02:51:44,028 [wrapper] pandaids: 7030251839
[2026-02-27 03:51:44] 2026-02-27 02:51:44,044 [wrapper] cleanup supervisor_pilot   99591 89898
[2026-02-27 03:51:44] 2026-02-27 02:51:44,047 [wrapper] Test setup, not cleaning
[2026-02-27 03:51:44] 2026-02-27 02:51:44,050 [wrapper] apfmon messages muted
[2026-02-27 03:51:44] 2026-02-27 02:51:44,052 [wrapper] ==== wrapper stdout END ====
[2026-02-27 03:51:44] 2026-02-27 02:51:44,055 [wrapper] ==== wrapper stderr END ====
[2026-02-27 03:51:44]  *** Error codes and diagnostics ***
[2026-02-27 03:51:44]     "exeErrorCode": 0,
[2026-02-27 03:51:44]     "exeErrorDiag": "",
[2026-02-27 03:51:44]     "pilotErrorCode": 0,
[2026-02-27 03:51:44]     "pilotErrorDiag": "",
[2026-02-27 03:51:44]  *** Listing of results directory ***
[2026-02-27 03:51:44] total 509328
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc    584627 Feb 25 14:07 pilot3.tar.gz
[2026-02-27 03:51:44] -rwx------ 1 boinc boinc     36322 Feb 25 14:08 runpilot2-wrapper.sh
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc      5111 Feb 25 14:09 queuedata.json
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc       100 Feb 27 02:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 03:51:44] -rwxr-xr-x 1 boinc boinc      7986 Feb 27 02:15 run_atlas
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc       105 Feb 27 02:15 job.xml
[2026-02-27 03:51:44] -rw-r--r-- 2 boinc boinc 289118736 Feb 27 02:15 EVNT.48220085._000031.pool.root.1
[2026-02-27 03:51:44] drwxrwx--x 2 boinc boinc      4096 Feb 27 02:15 shared
[2026-02-27 03:51:44] -rw-r--r-- 2 boinc boinc    597955 Feb 27 02:15 input.tar.gz
[2026-02-27 03:51:44] -rw-r--r-- 2 boinc boinc     15845 Feb 27 02:15 start_atlas.sh
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc         0 Feb 27 02:15 boinc_setup_complete
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc      6447 Feb 27 02:15 init_data.xml
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc         0 Feb 27 02:15 boinc_lockfile
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc      2564 Feb 27 02:15 pandaJob.out
[2026-02-27 03:51:44] -rw------- 1 boinc boinc    998489 Feb 27 02:15 agis_schedconf.cvmfs.json
[2026-02-27 03:51:44] -rw------- 1 boinc boinc   1513015 Feb 27 02:15 agis_ddmendpoints.agis.ALL.json
[2026-02-27 03:51:44] -rw------- 1 boinc boinc       426 Feb 27 02:15 workernode_map.json
[2026-02-27 03:51:44] drwx------ 5 boinc boinc      4096 Feb 27 02:15 pilot3
[2026-02-27 03:51:44] -rw------- 1 boinc boinc 226300669 Feb 27 03:50 HITS.48838416._000767.pool.root.1
[2026-02-27 03:51:44] -rw------- 1 boinc boinc        95 Feb 27 03:50 pilot_heartbeat.json
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc       529 Feb 27 03:50 boinc_task_state.xml
[2026-02-27 03:51:44] -rw------- 1 boinc boinc      1014 Feb 27 03:51 memory_monitor_summary.json
[2026-02-27 03:51:44] -rw------- 1 boinc boinc    270400 Feb 27 03:51 log.48838416._000767.job.log.tgz.1
[2026-02-27 03:51:44] -rw------- 1 boinc boinc      6312 Feb 27 03:51 heartbeat.json
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc      8192 Feb 27 03:51 boinc_mmap_file
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc        27 Feb 27 03:51 wrapper_checkpoint.txt
[2026-02-27 03:51:44] -rw------- 1 boinc boinc       745 Feb 27 03:51 pilotlog.txt
[2026-02-27 03:51:44] -rw------- 1 boinc boinc    833904 Feb 27 03:51 log.48838416._000767.job.log.1
[2026-02-27 03:51:44] -rw------- 1 boinc boinc       357 Feb 27 03:51 output.list
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc       620 Feb 27 03:51 runtime_log
[2026-02-27 03:51:44] -rw------- 1 boinc boinc   1126400 Feb 27 03:51 result.tar.gz
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc      8911 Feb 27 03:51 runtime_log.err
[2026-02-27 03:51:44] -rw------- 1 boinc boinc       660 Feb 27 03:51 4iJODmfnTF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmqzxKDmvumX1m.diag
[2026-02-27 03:51:44] -rw-r--r-- 1 boinc boinc     12845 Feb 27 03:51 stderr.txt
[2026-02-27 03:51:44] HITS file was successfully produced:
[2026-02-27 03:51:44] -rw------- 1 boinc boinc 226300669 Feb 27 03:50 shared/HITS.pool.root.1
[2026-02-27 03:51:44]  *** Contents of shared directory: ***
[2026-02-27 03:51:44] total 505052
[2026-02-27 03:51:44] -rw-r--r-- 2 boinc boinc 289118736 Feb 27 02:15 ATLAS.root_0
[2026-02-27 03:51:44] -rw-r--r-- 2 boinc boinc    597955 Feb 27 02:15 input.tar.gz
[2026-02-27 03:51:44] -rw-r--r-- 2 boinc boinc     15845 Feb 27 02:15 start_atlas.sh
[2026-02-27 03:51:44] -rw------- 1 boinc boinc 226300669 Feb 27 03:50 HITS.pool.root.1
[2026-02-27 03:51:44] -rw------- 1 boinc boinc   1126400 Feb 27 03:51 result.tar.gz
03:51:45 (85850): run_atlas exited; CPU time 16530.856777
03:51:45 (85850): called boinc_finish(0)

</stderr_txt>
]]>

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