Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:06:42 (13971): wrapper (7.7.26015): starting
18:06:42 (13971): wrapper: running run_atlas (--nthreads 3)
[2026-02-26 18:06:42] Arguments: --nthreads 3
[2026-02-26 18:06:42] Threads: 3
[2026-02-26 18:06:42] Checking for CVMFS
[2026-02-26 18:06:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-26 18:06:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-26 18:06:43] Running cvmfs_config stat atlas.cern.ch
[2026-02-26 18:06:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-26 18:06:43] 2.9.2.0 2903 13 47000 156661 2 186 26193469 36864000 828 130560 0 33032 99.958 1534 31306 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-26 18:06:43] CVMFS is ok
[2026-02-26 18:06:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-26 18:06:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-26 18:06:43] Further information can be found at the LHC@home message board.
[2026-02-26 18:06:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-26 18:06:43] Checking for apptainer binary...
[2026-02-26 18:06:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-26 18:06:43] Running /usr/bin/apptainer --version
[2026-02-26 18:06:43] apptainer version 1.4.1-1.1
[2026-02-26 18:06:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-26 18:06:43] belleA253
[2026-02-26 18:06:43] apptainer works
[2026-02-26 18:06:43] Set ATHENA_PROC_NUMBER=3
[2026-02-26 18:06:43] Set ATHENA_CORE_NUMBER=3
[2026-02-26 18:06:43] Starting ATLAS job with PandaID=7030348737
[2026-02-26 18:06:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-26 19:47:29]  *** The last 200 lines of the pilot log: ***
[2026-02-26 19:47:29] 2026-02-26 18:46:57,547 | INFO     | job 7030348737 has completed (purged errors)
[2026-02-26 19:47:29] 2026-02-26 18:46:57,547 | INFO     | overall cleanup function is called
[2026-02-26 19:47:29] 2026-02-26 18:46:58,554 | INFO     | --- collectZombieJob: --- 10, [22526]
[2026-02-26 19:47:29] 2026-02-26 18:46:58,554 | INFO     | zombie collector waiting for pid 22526
[2026-02-26 19:47:29] 2026-02-26 18:46:58,554 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-26 19:47:29] 2026-02-26 18:46:58,554 | INFO     | collected zombie processes
[2026-02-26 19:47:29] 2026-02-26 18:46:58,554 | INFO     | will attempt to kill all subprocesses of pid=22526
[2026-02-26 19:47:29] 2026-02-26 18:46:58,594 | INFO     | process IDs to be killed: [22526] (in reverse order)
[2026-02-26 19:47:29] 2026-02-26 18:46:58,620 | WARNING  | found no corresponding commands to process id(s)
[2026-02-26 19:47:29] 2026-02-26 18:46:58,620 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-26 19:47:29] 2026-02-26 18:46:58,621 | INFO     | did not find any defunct processes belonging to 22526
[2026-02-26 19:47:29] 2026-02-26 18:46:58,622 | INFO     | did not find any defunct processes belonging to 22526
[2026-02-26 19:47:29] 2026-02-26 18:46:58,622 | INFO     | ready for new job
[2026-02-26 19:47:29] 2026-02-26 18:46:58,622 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-26 19:47:29] 2026-02-26 18:46:58,623 | INFO     | **************************************
[2026-02-26 19:47:29] 2026-02-26 18:46:58,623 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-26 19:47:29] 2026-02-26 18:46:58,623 | INFO     | **************************************
[2026-02-26 19:47:29] 2026-02-26 18:46:58,623 | INFO     | 
[2026-02-26 19:47:29] 2026-02-26 18:46:58,623 | INFO     | architecture information:
[2026-02-26 19:47:29] 2026-02-26 18:46:58,623 | INFO     | executing command: cat /etc/os-release
[2026-02-26 19:47:29] 2026-02-26 18:46:58,632 | INFO     | cat /etc/os-release:
[2026-02-26 19:47:29] NAME="CentOS Linux"
[2026-02-26 19:47:29] VERSION="7 (Core)"
[2026-02-26 19:47:29] ID="centos"
[2026-02-26 19:47:29] ID_LIKE="rhel fedora"
[2026-02-26 19:47:29] VERSION_ID="7"
[2026-02-26 19:47:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-26 19:47:29] ANSI_COLOR="0;31"
[2026-02-26 19:47:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-26 19:47:29] HOME_URL="https://www.centos.org/"
[2026-02-26 19:47:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-26 19:47:29] 
[2026-02-26 19:47:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-26 19:47:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-26 19:47:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-26 19:47:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-26 19:47:29] 
[2026-02-26 19:47:29] 2026-02-26 18:46:58,633 | INFO     | **************************************
[2026-02-26 19:47:29] 2026-02-26 18:46:59,136 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-26 19:47:29] 2026-02-26 18:46:59,150 | INFO     | sufficient remaining disk space (377368870912 B)
[2026-02-26 19:47:29] 2026-02-26 18:46:59,150 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-26 19:47:29] 2026-02-26 18:46:59,150 | INFO     | current server update state: UPDATING_FINAL
[2026-02-26 19:47:29] 2026-02-26 18:46:59,150 | INFO     | update_server=False
[2026-02-26 19:47:29] 2026-02-26 18:46:59,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-26 19:47:29] 2026-02-26 18:46:59,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-26 19:47:29] 2026-02-26 18:46:59,827 | INFO     | all data control threads have been joined
[2026-02-26 19:47:29] 2026-02-26 18:47:00,133 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-26 19:47:29] 2026-02-26 18:47:00,134 | INFO     | aborting loop
[2026-02-26 19:47:29] 2026-02-26 18:47:00,156 | INFO     | [job] queue monitor thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:00,156 | INFO     | [job] retrieve thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:00,175 | INFO     | [job] create_data_payload thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:00,292 | INFO     | [payload] validate_pre thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:00,332 | INFO     | all job control threads have been joined
[2026-02-26 19:47:29] 2026-02-26 18:47:00,432 | INFO     | all payload control threads have been joined
[2026-02-26 19:47:29] 2026-02-26 18:47:00,432 | INFO     | [data] copytool_in thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:00,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-26 19:47:29] 2026-02-26 18:47:00,505 | INFO     | [payload] failed_post thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:00,616 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-26 19:47:29] 2026-02-26 18:47:00,833 | INFO     | [data] control thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:00,844 | INFO     | [payload] execute_payloads thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:01,139 | INFO     | [job] job monitor thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:01,147 | INFO     | [monitor] cgroup control has ended
[2026-02-26 19:47:29] 2026-02-26 18:47:01,338 | INFO     | [job] control thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:01,437 | INFO     | [payload] control thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:01,475 | INFO     | [payload] validate_post thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:01,618 | INFO     | [job] validate thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:02,468 | INFO     | [data] copytool_out thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:04,623 | INFO     | [data] queue_monitor thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:10,068 | INFO     | job.realtimelogging is not enabled
[2026-02-26 19:47:29] 2026-02-26 18:47:11,074 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-26 19:47:29] 2026-02-26 18:47:13,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139820192569152)>', '<ExcThread(monitor, started 139819556525824)>']
[2026-02-26 19:47:29] 2026-02-26 18:47:18,125 | INFO     | all workflow threads have been joined
[2026-02-26 19:47:29] 2026-02-26 18:47:18,126 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-26 19:47:29] 2026-02-26 18:47:18,126 | INFO     | traces error code: 0
[2026-02-26 19:47:29] 2026-02-26 18:47:18,126 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-26 19:47:29] 2026-02-26 18:47:29,762 | INFO     | PID=18054 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-26 19:47:29] 2026-02-26 18:47:29,762 | INFO     | found 0 job(s) in 20 queues
[2026-02-26 19:47:29] 2026-02-26 18:47:29,762 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-26 19:47:29] 2026-02-26 18:47:29,762 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-26 19:47:29] 2026-02-26 18:47:29,762 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-26 19:47:29] 2026-02-26 18:47:29,762 | INFO     | [monitor] control thread has ended
[2026-02-26 19:47:29] 2026-02-26 18:47:29,807 [wrapper] ==== pilot stdout END ====
[2026-02-26 19:47:29] 2026-02-26 18:47:29,810 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-26 19:47:29] 2026-02-26 18:47:29,813 [wrapper] pilotpid: 18054
[2026-02-26 19:47:29] 2026-02-26 18:47:29,815 [wrapper] Pilot exit status: 0
[2026-02-26 19:47:29] 2026-02-26 18:47:29,823 [wrapper] pandaids: 7030348737
[2026-02-26 19:47:29] 2026-02-26 18:47:29,839 [wrapper] cleanup supervisor_pilot   29345 18055
[2026-02-26 19:47:29] 2026-02-26 18:47:29,842 [wrapper] Test setup, not cleaning
[2026-02-26 19:47:29] 2026-02-26 18:47:29,844 [wrapper] apfmon messages muted
[2026-02-26 19:47:29] 2026-02-26 18:47:29,847 [wrapper] ==== wrapper stdout END ====
[2026-02-26 19:47:29] 2026-02-26 18:47:29,849 [wrapper] ==== wrapper stderr END ====
[2026-02-26 19:47:29]  *** Error codes and diagnostics ***
[2026-02-26 19:47:29]     "exeErrorCode": 0,
[2026-02-26 19:47:29]     "exeErrorDiag": "",
[2026-02-26 19:47:29]     "pilotErrorCode": 0,
[2026-02-26 19:47:29]     "pilotErrorDiag": "",
[2026-02-26 19:47:29]  *** Listing of results directory ***
[2026-02-26 19:47:29] total 500512
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc    584627 Feb 25 21:36 pilot3.tar.gz
[2026-02-26 19:47:29] -rwx------ 1 boinc boinc     36322 Feb 25 21:37 runpilot2-wrapper.sh
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc      5111 Feb 25 21:38 queuedata.json
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc       100 Feb 26 18:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-26 19:47:29] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 18:06 run_atlas
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc       105 Feb 26 18:06 job.xml
[2026-02-26 19:47:29] -rw-r--r-- 2 boinc boinc 284945879 Feb 26 18:06 EVNT.48220165._000025.pool.root.1
[2026-02-26 19:47:29] -rw-r--r-- 2 boinc boinc    597955 Feb 26 18:06 input.tar.gz
[2026-02-26 19:47:29] -rw-r--r-- 2 boinc boinc     15845 Feb 26 18:06 start_atlas.sh
[2026-02-26 19:47:29] drwxrwx--x 2 boinc boinc      4096 Feb 26 18:06 shared
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc         0 Feb 26 18:06 boinc_setup_complete
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc         0 Feb 26 18:06 boinc_lockfile
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc      2553 Feb 26 18:06 pandaJob.out
[2026-02-26 19:47:29] -rw------- 1 boinc boinc    996541 Feb 26 18:06 agis_schedconf.cvmfs.json
[2026-02-26 19:47:29] -rw------- 1 boinc boinc   1513015 Feb 26 18:06 agis_ddmendpoints.agis.ALL.json
[2026-02-26 19:47:29] -rw------- 1 boinc boinc       425 Feb 26 18:06 workernode_map.json
[2026-02-26 19:47:29] drwx------ 5 boinc boinc      4096 Feb 26 18:06 pilot3
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc      6454 Feb 26 19:07 init_data.xml
[2026-02-26 19:47:29] -rw------- 1 boinc boinc 221387529 Feb 26 19:46 HITS.48838492._000618.pool.root.1
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc       529 Feb 26 19:46 boinc_task_state.xml
[2026-02-26 19:47:29] -rw------- 1 boinc boinc      1014 Feb 26 19:46 memory_monitor_summary.json
[2026-02-26 19:47:29] -rw------- 1 boinc boinc    274319 Feb 26 19:46 log.48838492._000618.job.log.tgz.1
[2026-02-26 19:47:29] -rw------- 1 boinc boinc      6295 Feb 26 19:46 heartbeat.json
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc      8192 Feb 26 19:47 boinc_mmap_file
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc        27 Feb 26 19:47 wrapper_checkpoint.txt
[2026-02-26 19:47:29] -rw------- 1 boinc boinc       745 Feb 26 19:47 pilotlog.txt
[2026-02-26 19:47:29] -rw------- 1 boinc boinc        95 Feb 26 19:47 pilot_heartbeat.json
[2026-02-26 19:47:29] -rw------- 1 boinc boinc    868133 Feb 26 19:47 log.48838492._000618.job.log.1
[2026-02-26 19:47:29] -rw------- 1 boinc boinc       357 Feb 26 19:47 output.list
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc       620 Feb 26 19:47 runtime_log
[2026-02-26 19:47:29] -rw------- 1 boinc boinc   1157120 Feb 26 19:47 result.tar.gz
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc      8911 Feb 26 19:47 runtime_log.err
[2026-02-26 19:47:29] -rw------- 1 boinc boinc       660 Feb 26 19:47 5z3MDmLoaF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmTXzKDmS4hl2n.diag
[2026-02-26 19:47:29] -rw-r--r-- 1 boinc boinc     10880 Feb 26 19:47 stderr.txt
[2026-02-26 19:47:29] HITS file was successfully produced:
[2026-02-26 19:47:29] -rw------- 1 boinc boinc 221387529 Feb 26 19:46 shared/HITS.pool.root.1
[2026-02-26 19:47:29]  *** Contents of shared directory: ***
[2026-02-26 19:47:29] total 496208
[2026-02-26 19:47:29] -rw-r--r-- 2 boinc boinc 284945879 Feb 26 18:06 ATLAS.root_0
[2026-02-26 19:47:29] -rw-r--r-- 2 boinc boinc    597955 Feb 26 18:06 input.tar.gz
[2026-02-26 19:47:29] -rw-r--r-- 2 boinc boinc     15845 Feb 26 18:06 start_atlas.sh
[2026-02-26 19:47:29] -rw------- 1 boinc boinc 221387529 Feb 26 19:46 HITS.pool.root.1
[2026-02-26 19:47:29] -rw------- 1 boinc boinc   1157120 Feb 26 19:47 result.tar.gz
19:47:31 (13971): run_atlas exited; CPU time 17261.547478
19:47:31 (13971): called boinc_finish(0)

</stderr_txt>
]]>

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