Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:24 (987213): wrapper (7.7.26015): starting
00:04:24 (987213): wrapper: running run_atlas (--nthreads 8)
[2026-02-26 00:04:24] Arguments: --nthreads 8
[2026-02-26 00:04:24] Threads: 8
[2026-02-26 00:04:24] Checking for CVMFS
[2026-02-26 00:04:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-26 00:04:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-26 00:04:26] Running cvmfs_config stat atlas.cern.ch
[2026-02-26 00:04:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-26 00:04:28] 2.13.3.0 8602 162000 664164 156642 2 402 12831525 21042176 21971 16776704 0 574703601 99.386 880426475 33056 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-26 00:04:28] CVMFS is ok
[2026-02-26 00:04:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-26 00:04:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-26 00:04:28] Further information can be found at the LHC@home message board.
[2026-02-26 00:04:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-26 00:04:28] Checking for apptainer binary...
[2026-02-26 00:04:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-26 00:04:28] Running /usr/bin/apptainer --version
[2026-02-26 00:04:28] apptainer version 1.4.5-2.el9
[2026-02-26 00:04:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-26 00:04:30] c-16-16.aglt2.org
[2026-02-26 00:04:30] apptainer works
[2026-02-26 00:04:30] Set ATHENA_PROC_NUMBER=8
[2026-02-26 00:04:30] Set ATHENA_CORE_NUMBER=8
[2026-02-26 00:04:30] Starting ATLAS job with PandaID=7030393656
[2026-02-26 00:04:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-28 09:35:47]  *** The last 200 lines of the pilot log: ***
[2026-02-28 09:35:47] 2026-02-28 14:34:13,987 | INFO     | chi2: 10.687580972225355
[2026-02-28 09:35:47] 2026-02-28 14:34:14,061 | INFO     | sum of square deviations: 11995064594843.223
[2026-02-28 09:35:47] 2026-02-28 14:34:15,302 | INFO     | time since job start (206783s) is within the limit (349056.0s)
[2026-02-28 09:35:47] 2026-02-28 14:34:15,964 | INFO     | monitor loop #6270: job 0:7030393656 is in state 'finished'
[2026-02-28 09:35:47] 2026-02-28 14:34:15,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 09:35:47] 2026-02-28 14:34:17,491 | INFO     | sum of deviations: 7353945592342.776
[2026-02-28 09:35:47] 2026-02-28 14:34:17,491 | INFO     | mean x: 1772185749.0683029
[2026-02-28 09:35:47] 2026-02-28 14:34:17,573 | INFO     | mean y: 2530729.1827321113
[2026-02-28 09:35:47] 2026-02-28 14:34:17,573 | INFO     | intersect: -1083962592.7270417
[2026-02-28 09:35:47] 2026-02-28 14:34:17,492 | INFO     | time since job start (206785s) is within the limit (349056.0s)
[2026-02-28 09:35:47] 2026-02-28 14:34:17,664 | INFO     | chi2: 8.424287025582018
[2026-02-28 09:35:47] 2026-02-28 14:34:17,718 | INFO     | current chi2=8.424287025582018 (change=21.176858940532327 %)
[2026-02-28 09:35:47] 2026-02-28 14:34:17,718 | INFO     | right removable region: 3381
[2026-02-28 09:35:47] 2026-02-28 14:34:17,816 | INFO     | sum of square deviations: 11995061977877.838
[2026-02-28 09:35:47] 2026-02-28 14:34:18,957 | INFO     | monitor loop #6271: job 0:7030393656 is in state 'finished'
[2026-02-28 09:35:47] 2026-02-28 14:34:18,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 09:35:47] 2026-02-28 14:34:20,089 | INFO     | sum of deviations: 5564334820316.58
[2026-02-28 09:35:47] 2026-02-28 14:34:20,089 | INFO     | mean x: 1772186054.0691898
[2026-02-28 09:35:47] 2026-02-28 14:34:20,089 | INFO     | mean y: 2531991.3991720877
[2026-02-28 09:35:47] 2026-02-28 14:34:20,090 | INFO     | intersect: -819559348.0972868
[2026-02-28 09:35:47] 2026-02-28 14:34:20,093 | INFO     | chi2: 6.973298376688706
[2026-02-28 09:35:47] 2026-02-28 14:34:20,094 | INFO     | current chi2=6.973298376688706 (change=34.753258058949385 %)
[2026-02-28 09:35:47] 2026-02-28 14:34:20,098 | INFO     | sum of square deviations: 11941939568105.795
[2026-02-28 09:35:47] 2026-02-28 14:34:21,573 | INFO     | monitor loop #6272: job 0:7030393656 is in state 'finished'
[2026-02-28 09:35:47] 2026-02-28 14:34:21,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 09:35:47] 2026-02-28 14:34:24,364 | INFO     | monitor loop #6273: job 0:7030393656 is in state 'finished'
[2026-02-28 09:35:47] 2026-02-28 14:34:24,364 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 09:35:47] 2026-02-28 14:34:24,933 | INFO     | sum of deviations: 4738471943760.85
[2026-02-28 09:35:47] 2026-02-28 14:34:24,994 | INFO     | mean x: 1772186206.5697365
[2026-02-28 09:35:47] 2026-02-28 14:34:24,994 | INFO     | mean y: 2534362.121705656
[2026-02-28 09:35:47] 2026-02-28 14:34:24,994 | INFO     | intersect: -700655816.5807856
[2026-02-28 09:35:47] 2026-02-28 14:34:25,042 | INFO     | chi2: 4.990156611476254
[2026-02-28 09:35:47] 2026-02-28 14:34:25,043 | INFO     | current chi2=4.990156611476254 (change=28.439078009941017 %)
[2026-02-28 09:35:47] 2026-02-28 14:34:25,156 | INFO     | sum of square deviations: 11888973613298.904
[2026-02-28 09:35:47] 2026-02-28 14:34:27,141 | INFO     | monitor loop #6274: job 0:7030393656 is in state 'finished'
[2026-02-28 09:35:47] 2026-02-28 14:34:27,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 09:35:47] 2026-02-28 14:34:27,485 | INFO     | sum of deviations: 4230451941338.3433
[2026-02-28 09:35:47] 2026-02-28 14:34:27,485 | INFO     | mean x: 1772186359.0711744
[2026-02-28 09:35:47] 2026-02-28 14:34:27,485 | INFO     | mean y: 2535824.569395018
[2026-02-28 09:35:47] 2026-02-28 14:34:27,485 | INFO     | intersect: -628061018.1016773
[2026-02-28 09:35:47] 2026-02-28 14:34:27,493 | INFO     | chi2: 4.2195907680283105
[2026-02-28 09:35:47] 2026-02-28 14:34:27,493 | INFO     | current chi2=4.2195907680283105 (change=15.441716632215774 %)
[2026-02-28 09:35:47] 2026-02-28 14:34:27,494 | INFO     | left removable region: 30
[2026-02-28 09:35:47] 2026-02-28 14:34:27,510 | INFO     | sum of square deviations: 11668231163127.479
[2026-02-28 09:35:47] 2026-02-28 14:34:30,389 | INFO     | monitor loop #6275: job 0:7030393656 is in state 'finished'
[2026-02-28 09:35:47] 2026-02-28 14:34:30,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-28 09:35:47] 2026-02-28 14:34:32,021 | INFO     | sum of deviations: 3958777501642.352
[2026-02-28 09:35:47] 2026-02-28 14:34:32,021 | INFO     | mean x: 1772186633.5738585
[2026-02-28 09:35:47] 2026-02-28 14:34:32,021 | INFO     | mean y: 2540513.6066845716
[2026-02-28 09:35:47] 2026-02-28 14:34:32,021 | INFO     | intersect: -598723934.759202
[2026-02-28 09:35:47] 2026-02-28 14:34:32,026 | INFO     | chi2: 1.0829146861028265
[2026-02-28 09:35:47] 2026-02-28 14:34:32,026 | INFO     | current memory leak: 0.34 B/s (using 3351 data points, chi2=1.08)
[2026-02-28 09:35:47] 2026-02-28 14:34:32,029 | INFO     | could have reported an average CPU frequency of 2900 MHz (116 samples)
[2026-02-28 09:35:47] 2026-02-28 14:34:32,029 | INFO     | ..............................
[2026-02-28 09:35:47] 2026-02-28 14:34:32,029 | INFO     | . Timing measurements:
[2026-02-28 09:35:47] 2026-02-28 14:34:32,029 | INFO     | . get job = 1 s
[2026-02-28 09:35:47] 2026-02-28 14:34:32,029 | INFO     | . initial setup = 77 s
[2026-02-28 09:35:47] 2026-02-28 14:34:32,030 | INFO     | . payload setup = 87 s
[2026-02-28 09:35:47] 2026-02-28 14:34:32,030 | INFO     | . stage-in = 0 s
[2026-02-28 09:35:47] 2026-02-28 14:34:32,030 | INFO     | . payload execution = 206640 s
[2026-02-28 09:35:47] 2026-02-28 14:34:32,030 | INFO     | . stage-out = 21 s
[2026-02-28 09:35:47] 2026-02-28 14:34:32,030 | INFO     | . log creation = 8 s
[2026-02-28 09:35:47] 2026-02-28 14:34:32,030 | INFO     | ..............................
[2026-02-28 09:35:47] 2026-02-28 14:34:32,637 | INFO     | 
[2026-02-28 09:35:47] 2026-02-28 14:34:32,637 | INFO     | job summary report
[2026-02-28 09:35:47] 2026-02-28 14:34:32,637 | INFO     | --------------------------------------------------
[2026-02-28 09:35:47] 2026-02-28 14:34:32,637 | INFO     | PanDA job id: 7030393656
[2026-02-28 09:35:47] 2026-02-28 14:34:32,637 | INFO     | task id: 48838620
[2026-02-28 09:35:47] 2026-02-28 14:34:32,638 | INFO     | errors: (none)
[2026-02-28 09:35:47] 2026-02-28 14:34:32,638 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-28 09:35:47] 2026-02-28 14:34:32,638 | INFO     | pilot state: finished 
[2026-02-28 09:35:47] 2026-02-28 14:34:32,638 | INFO     | transexitcode: 0
[2026-02-28 09:35:47] 2026-02-28 14:34:32,638 | INFO     | exeerrorcode: 0
[2026-02-28 09:35:47] 2026-02-28 14:34:32,639 | INFO     | exeerrordiag: 
[2026-02-28 09:35:47] 2026-02-28 14:34:32,639 | INFO     | exitcode: 0
[2026-02-28 09:35:47] 2026-02-28 14:34:32,639 | INFO     | exitmsg: OK
[2026-02-28 09:35:47] 2026-02-28 14:34:32,639 | INFO     | cpuconsumptiontime: 85823 s
[2026-02-28 09:35:47] 2026-02-28 14:34:32,639 | INFO     | nevents: 400
[2026-02-28 09:35:47] 2026-02-28 14:34:32,639 | INFO     | neventsw: 0
[2026-02-28 09:35:47] 2026-02-28 14:34:32,639 | INFO     | pid: 1040031
[2026-02-28 09:35:47] 2026-02-28 14:34:32,640 | INFO     | pgrp: 1040031
[2026-02-28 09:35:47] 2026-02-28 14:34:32,640 | INFO     | corecount: 8
[2026-02-28 09:35:47] 2026-02-28 14:34:32,640 | INFO     | event service: False
[2026-02-28 09:35:47] 2026-02-28 14:34:32,640 | INFO     | sizes: {0: 2281182, 1: 2281783, 3: 2281867, 6: 2281923, 8: 2282356, 9: 2282384, 10: 2282540, 206737: 2385822, 206738: 2385821, 206761: 2394875, 206763: 2394931, 20
[2026-02-28 09:35:47] 2026-02-28 14:34:32,640 | INFO     | --------------------------------------------------
[2026-02-28 09:35:47] 2026-02-28 14:34:32,682 | INFO     | 
[2026-02-28 09:35:47] 2026-02-28 14:34:32,682 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-02-28 09:35:47] 2026-02-28 14:34:32,849 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,849 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,850 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,850 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,850 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,850 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,850 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,851 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,851 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,851 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,851 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,851 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,852 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,855 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-28 09:35:47] 2026-02-28 14:34:32,855 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,855 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-28 09:35:47] 2026-02-28 14:34:32,855 | INFO     | job 7030393656 has completed (purged errors)
[2026-02-28 09:35:47] 2026-02-28 14:34:32,856 | INFO     | overall cleanup function is called
[2026-02-28 09:35:47] 2026-02-28 14:34:33,149 | INFO     | PID=1011369 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-28 09:35:47] 2026-02-28 14:34:33,149 | INFO     | .. there are 43 such processes running
[2026-02-28 09:35:47] 2026-02-28 14:34:34,092 | INFO     | --- collectZombieJob: --- 10, [1040031]
[2026-02-28 09:35:47] 2026-02-28 14:34:34,093 | INFO     | zombie collector waiting for pid 1040031
[2026-02-28 09:35:47] 2026-02-28 14:34:34,093 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-28 09:35:47] 2026-02-28 14:34:34,093 | INFO     | collected zombie processes
[2026-02-28 09:35:47] 2026-02-28 14:34:34,093 | INFO     | will attempt to kill all subprocesses of pid=1040031
[2026-02-28 09:35:47] 2026-02-28 14:34:36,203 | INFO     | process IDs to be killed: [1040031] (in reverse order)
[2026-02-28 09:35:47] 2026-02-28 14:34:37,881 | WARNING  | found no corresponding commands to process id(s)
[2026-02-28 09:35:47] 2026-02-28 14:34:37,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-28 09:35:47] 2026-02-28 14:34:38,059 | INFO     | did not find any defunct processes belonging to 1040031
[2026-02-28 09:35:47] 2026-02-28 14:34:38,255 | INFO     | did not find any defunct processes belonging to 1040031
[2026-02-28 09:35:47] 2026-02-28 14:34:38,255 | INFO     | ready for new job
[2026-02-28 09:35:47] 2026-02-28 14:34:38,256 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-28 09:35:47] 2026-02-28 14:34:38,314 | INFO     | **************************************
[2026-02-28 09:35:47] 2026-02-28 14:34:38,314 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-28 09:35:47] 2026-02-28 14:34:38,314 | INFO     | **************************************
[2026-02-28 09:35:47] 2026-02-28 14:34:38,315 | INFO     | 
[2026-02-28 09:35:47] 2026-02-28 14:34:38,335 | INFO     | architecture information:
[2026-02-28 09:35:47] 2026-02-28 14:34:38,357 | INFO     | executing command: cat /etc/os-release
[2026-02-28 09:35:47] 2026-02-28 14:34:38,461 | INFO     | cat /etc/os-release:
[2026-02-28 09:35:47] NAME="CentOS Linux"
[2026-02-28 09:35:47] VERSION="7 (Core)"
[2026-02-28 09:35:47] ID="centos"
[2026-02-28 09:35:47] ID_LIKE="rhel fedora"
[2026-02-28 09:35:47] VERSION_ID="7"
[2026-02-28 09:35:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-28 09:35:47] ANSI_COLOR="0;31"
[2026-02-28 09:35:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-28 09:35:47] HOME_URL="https://www.centos.org/"
[2026-02-28 09:35:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-28 09:35:47] 
[2026-02-28 09:35:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-28 09:35:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-28 09:35:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-28 09:35:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-28 09:35:47] 
[2026-02-28 09:35:47] 2026-02-28 14:34:38,462 | INFO     | **************************************
[2026-02-28 09:35:47] 2026-02-28 14:34:38,966 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-02-28 09:35:47] 2026-02-28 14:34:39,159 | INFO     | sufficient remaining disk space (50429165568 B)
[2026-02-28 09:35:47] 2026-02-28 14:34:39,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-28 09:35:47] 2026-02-28 14:34:39,160 | INFO     | current server update state: UPDATING_FINAL
[2026-02-28 09:35:47] 2026-02-28 14:34:39,160 | INFO     | update_server=False
[2026-02-28 09:35:47] 2026-02-28 14:34:39,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-28 09:35:47] 2026-02-28 14:34:39,183 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-28 09:35:47] 2026-02-28 14:34:39,183 | INFO     | aborting loop
[2026-02-28 09:35:47] 2026-02-28 14:34:39,854 | INFO     | all data control threads have been joined
[2026-02-28 09:35:47] 2026-02-28 14:34:40,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-28 09:35:47] 2026-02-28 14:34:40,166 | INFO     | [job] retrieve thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:40,170 | INFO     | all job control threads have been joined
[2026-02-28 09:35:47] 2026-02-28 14:34:40,188 | INFO     | [job] job monitor thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:40,396 | INFO     | all payload control threads have been joined
[2026-02-28 09:35:47] 2026-02-28 14:34:40,515 | INFO     | [payload] validate_post thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:40,599 | INFO     | [job] create_data_payload thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:40,740 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:40,860 | INFO     | [data] control thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:41,152 | INFO     | [data] copytool_in thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:41,158 | INFO     | [payload] failed_post thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:41,188 | INFO     | [job] control thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:41,412 | INFO     | [payload] control thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:41,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-28 09:35:47] 2026-02-28 14:34:41,463 | INFO     | [payload] execute_payloads thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:41,463 | INFO     | [payload] validate_pre thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:41,473 | INFO     | [job] validate thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:41,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-28 09:35:47] 2026-02-28 14:34:42,079 | INFO     | [data] copytool_out thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:42,660 | INFO     | [job] queue monitor thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:34:45,453 | INFO     | [data] queue_monitor thread has finished
[2026-02-28 09:35:47] 2026-02-28 14:35:12,153 | INFO     | PID=1011369 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-28 09:35:47] 2026-02-28 14:35:12,156 | INFO     | .. there are 43 such processes running
[2026-02-28 09:35:47] 2026-02-28 14:35:12,157 | INFO     | found 0 job(s) in 20 queues
[2026-02-28 09:35:47] 2026-02-28 14:35:12,157 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-28 09:35:47] 2026-02-28 14:35:12,157 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-28 09:35:47] 2026-02-28 14:35:38,445 | INFO     | [monitor] cgroup control has ended
[2026-02-28 09:35:47] 2026-02-28 14:35:39,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140346234496832)>', '<ExcThread(monitor, started 140345874560768)>']
[2026-02-28 09:35:47] 2026-02-28 14:35:39,546 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-28 09:35:47] 2026-02-28 14:35:39,547 | INFO     | [monitor] control thread has ended
[2026-02-28 09:35:47] 2026-02-28 14:35:44,364 | INFO     | all workflow threads have been joined
[2026-02-28 09:35:47] 2026-02-28 14:35:44,364 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-28 09:35:47] 2026-02-28 14:35:44,364 | INFO     | traces error code: 0
[2026-02-28 09:35:47] 2026-02-28 14:35:44,372 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-28 09:35:47] 2026-02-28 14:35:44,808 [wrapper] ==== pilot stdout END ====
[2026-02-28 09:35:47] 2026-02-28 14:35:44,867 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-28 09:35:47] 2026-02-28 14:35:44,875 [wrapper] pilotpid: 1011369
[2026-02-28 09:35:47] 2026-02-28 14:35:44,878 [wrapper] Pilot exit status: 0
[2026-02-28 09:35:47] 2026-02-28 14:35:45,101 [wrapper] pandaids: 7030393656
[2026-02-28 09:35:47] 2026-02-28 14:35:45,353 [wrapper] cleanup supervisor_pilot 2102945 1011370
[2026-02-28 09:35:47] 2026-02-28 14:35:45,429 [wrapper] Test setup, not cleaning
[2026-02-28 09:35:47] 2026-02-28 14:35:45,469 [wrapper] apfmon messages muted
[2026-02-28 09:35:47] 2026-02-28 14:35:45,491 [wrapper] ==== wrapper stdout END ====
[2026-02-28 09:35:47] 2026-02-28 14:35:45,525 [wrapper] ==== wrapper stderr END ====
[2026-02-28 09:35:47]  *** Error codes and diagnostics ***
[2026-02-28 09:35:47]     "exeErrorCode": 0,
[2026-02-28 09:35:47]     "exeErrorDiag": "",
[2026-02-28 09:35:47]     "pilotErrorCode": 0,
[2026-02-28 09:35:47]     "pilotErrorDiag": "",
[2026-02-28 09:35:47]  *** Listing of results directory ***
[2026-02-28 09:35:47] total 506600
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas    584627 Feb 25 18:19 pilot3.tar.gz
[2026-02-28 09:35:47] -rwx------. 1 boincer umatlas     36322 Feb 25 18:21 runpilot2-wrapper.sh
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas      5111 Feb 25 18:22 queuedata.json
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas       100 Feb 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-28 09:35:47] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 26 00:04 run_atlas
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas       105 Feb 26 00:04 job.xml
[2026-02-28 09:35:47] -rw-r--r--. 2 boincer umatlas 273009354 Feb 26 00:04 EVNT.48343799._000030.pool.root.1
[2026-02-28 09:35:47] -rw-r--r--. 2 boincer umatlas     15845 Feb 26 00:04 start_atlas.sh
[2026-02-28 09:35:47] drwxrwx--x. 2 boincer umatlas      4096 Feb 26 00:04 shared
[2026-02-28 09:35:47] -rw-r--r--. 2 boincer umatlas    597957 Feb 26 00:04 input.tar.gz
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas         0 Feb 26 00:04 boinc_lockfile
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas      2563 Feb 26 00:04 pandaJob.out
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas        57 Feb 26 00:04 setup.sh.local
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas       441 Feb 26 00:07 workernode_map.json
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas    997632 Feb 26 00:07 agis_schedconf.cvmfs.json
[2026-02-28 09:35:47] drwx------. 5 boincer umatlas      4096 Feb 26 00:07 pilot3
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas 204436447 Feb 28 09:30 HITS.48838620._000730.pool.root.1
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas       531 Feb 28 09:30 boinc_task_state.xml
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas      6524 Feb 28 09:31 init_data.xml
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas      1040 Feb 28 09:33 memory_monitor_summary.json
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas   1513015 Feb 28 09:33 agis_ddmendpoints.agis.ALL.json
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas   2143491 Feb 28 09:34 log.48838620._000730.job.log.tgz.1
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas      6396 Feb 28 09:34 heartbeat.json
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas        95 Feb 28 09:35 pilot_heartbeat.json
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas      8192 Feb 28 09:35 boinc_mmap_file
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas      4820 Feb 28 09:35 pilotlog.txt
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas        28 Feb 28 09:35 wrapper_checkpoint.txt
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas  16543946 Feb 28 09:35 log.48838620._000730.job.log.1
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas       357 Feb 28 09:35 output.list
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas       620 Feb 28 09:35 runtime_log
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas  18708480 Feb 28 09:35 result.tar.gz
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas      9338 Feb 28 09:35 runtime_log.err
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas       659 Feb 28 09:35 6YCNDmTNdF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmSizKDm3z24am.diag
[2026-02-28 09:35:47] -rw-r--r--. 1 boincer umatlas     21649 Feb 28 09:35 stderr.txt
[2026-02-28 09:35:47] HITS file was successfully produced:
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas 204436447 Feb 28 09:30 shared/HITS.pool.root.1
[2026-02-28 09:35:47]  *** Contents of shared directory: ***
[2026-02-28 09:35:47] total 485136
[2026-02-28 09:35:47] -rw-r--r--. 2 boincer umatlas 273009354 Feb 26 00:04 ATLAS.root_0
[2026-02-28 09:35:47] -rw-r--r--. 2 boincer umatlas     15845 Feb 26 00:04 start_atlas.sh
[2026-02-28 09:35:47] -rw-r--r--. 2 boincer umatlas    597957 Feb 26 00:04 input.tar.gz
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas 204436447 Feb 28 09:30 HITS.pool.root.1
[2026-02-28 09:35:47] -rw-------. 1 boincer umatlas  18708480 Feb 28 09:35 result.tar.gz
09:35:49 (987213): run_atlas exited; CPU time 94691.919401
09:35:49 (987213): called boinc_finish(0)

</stderr_txt>
]]>

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