Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:53:02 (3024): wrapper (7.7.26015): starting
03:53:02 (3024): wrapper: running run_atlas (--nthreads 8)
[2026-02-26 03:53:02] Arguments: --nthreads 8
[2026-02-26 03:53:02] Threads: 8
[2026-02-26 03:53:02] Checking for CVMFS
[2026-02-26 03:53:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-26 03:53:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-26 03:53:02] Running cvmfs_config stat atlas.cern.ch
[2026-02-26 03:53:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-26 03:53:02] 2.11.0.0 4279 197993 87716 156638 3 8 3399370 4096001 70 130560 3 16084551 99.531 14561213 508 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-26 03:53:02] CVMFS is ok
[2026-02-26 03:53:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-26 03:53:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-26 03:53:02] Further information can be found at the LHC@home message board.
[2026-02-26 03:53:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-26 03:53:02] Checking for apptainer binary...
[2026-02-26 03:53:02] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-26 03:53:02] apptainer is not installed, using version from CVMFS
[2026-02-26 03:53:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-26 03:53:03] WARNING: Environment variable TMPDIR already has value [/tmp/job_11206803/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node342
[2026-02-26 03:53:03] apptainer works
[2026-02-26 03:53:03] Set ATHENA_PROC_NUMBER=8
[2026-02-26 03:53:03] Set ATHENA_CORE_NUMBER=8
[2026-02-26 03:53:03] Starting ATLAS job with PandaID=7030265473
[2026-02-26 03:53:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11206803/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-26 04:55:56]  *** The last 200 lines of the pilot log: ***
[2026-02-26 04:55:56]  lfn=log.48838596._000588.job.log.tgz.1
[2026-02-26 04:55:56]  mtime=0
[2026-02-26 04:55:56]  protocol_id=None
[2026-02-26 04:55:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-26 04:55:56]  replicas=None
[2026-02-26 04:55:56]  scope=mc23_13p6TeV
[2026-02-26 04:55:56]  status=None
[2026-02-26 04:55:56]  status_code=0
[2026-02-26 04:55:56]  storage_token=
[2026-02-26 04:55:56]  surl=/tmp/job_11206803/atlas/pilot/slots/0/PanDA_Pilot-7030265473/log.48838596._000588.job.log.tgz.1
[2026-02-26 04:55:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8d/2a/log.48838596._000588.job.log.tgz.1
[2026-02-26 04:55:56]  workdir=None
[2026-02-26 04:55:56] ]
[2026-02-26 04:55:56] 2026-02-26 03:55:19,881 | INFO     | transferring file log.48838596._000588.job.log.tgz.1 from /tmp/job_11206803/atlas/pilot/slots/0/PanDA_Pilot-7030265473/log.48838596._000588.job.log.tgz.1 to /tmp/j
[2026-02-26 04:55:56] 2026-02-26 03:55:19,881 | INFO     | executing command: /usr/bin/env mv /tmp/job_11206803/atlas/pilot/slots/0/PanDA_Pilot-7030265473/log.48838596._000588.job.log.tgz.1 /tmp/job_11206803/atlas/pilot/sl
[2026-02-26 04:55:56] 2026-02-26 03:55:19,888 | INFO     | adding to output.list: log.48838596._000588.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8d/2a/log.48838596._000588.job.log.tg
[2026-02-26 04:55:56] 2026-02-26 03:55:19,888 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-26 04:55:56] 2026-02-26 03:55:19,888 | INFO     | summary of transferred files:
[2026-02-26 04:55:56] 2026-02-26 03:55:19,888 | INFO     |  -- lfn=log.48838596._000588.job.log.tgz.1, status_code=0, status=transferred
[2026-02-26 04:55:56] 2026-02-26 03:55:19,888 | INFO     | stage-out finished correctly
[2026-02-26 04:55:56] 2026-02-26 03:55:21,220 | INFO     | time since job start (3712s) is within the limit (349056.0s)
[2026-02-26 04:55:56] 2026-02-26 03:55:22,252 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-26 04:55:56] 2026-02-26 03:55:22,398 | INFO     | PID=13335 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-26 04:55:56] 2026-02-26 03:55:22,398 | INFO     | .. there are 4 such processes running
[2026-02-26 04:55:56] 2026-02-26 03:55:23,399 | INFO     | time since job start (3714s) is within the limit (349056.0s)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,246 | INFO     | job 7030265473 has state=finished
[2026-02-26 04:55:56] 2026-02-26 03:55:25,246 | INFO     | preparing for final server update for job 7030265473 in state='finished'
[2026-02-26 04:55:56] 2026-02-26 03:55:25,246 | INFO     | reading metadata from: /tmp/job_11206803/atlas/pilot/slots/0/PanDA_Pilot-7030265473/jobReport.json
[2026-02-26 04:55:56] 2026-02-26 03:55:25,248 | INFO     | added worker_node to metadata from /tmp/job_11206803/atlas/pilot/slots/0/workernode_map.json
[2026-02-26 04:55:56] 2026-02-26 03:55:25,248 | INFO     | this job has now completed (state=finished)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,248 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,248 | INFO     | log transfer has been attempted: DONE
[2026-02-26 04:55:56] 2026-02-26 03:55:25,248 | INFO     | job 7030265473 has finished - writing final server update
[2026-02-26 04:55:56] 2026-02-26 03:55:25,248 | INFO     | total number of processed events: 400 (read)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,266 | INFO     | using path: /tmp/job_11206803/atlas/pilot/slots/0/PanDA_Pilot-7030265473/memory_monitor_summary.json (trf name=prmon)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,266 | INFO     | extracted standard info from prmon json
[2026-02-26 04:55:56] 2026-02-26 03:55:25,266 | INFO     | extracted standard memory fields from prmon json
[2026-02-26 04:55:56] 2026-02-26 03:55:25,266 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-26 04:55:56] 2026-02-26 03:55:25,266 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-26 04:55:56] 2026-02-26 03:55:25,266 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-26 04:55:56] 2026-02-26 03:55:25,267 | INFO     | fitting pss+swap vs Time
[2026-02-26 04:55:56] 2026-02-26 03:55:25,267 | INFO     | sum of square deviations: 46147842.0
[2026-02-26 04:55:56] 2026-02-26 03:55:25,267 | INFO     | sum of deviations: -70578708.00000003
[2026-02-26 04:55:56] 2026-02-26 03:55:25,267 | INFO     | mean x: 1772076368.0
[2026-02-26 04:55:56] 2026-02-26 03:55:25,267 | INFO     | mean y: 2566027.7735849055
[2026-02-26 04:55:56] 2026-02-26 03:55:25,267 | INFO     | intersect: 2712787245.285177
[2026-02-26 04:55:56] 2026-02-26 03:55:25,267 | INFO     | chi2: 0.001937564255829035
[2026-02-26 04:55:56] 2026-02-26 03:55:25,267 | INFO     | current memory leak: -1.53 B/s (using 53 data points, chi2=0.00)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,267 | INFO     | could have reported an average CPU frequency of 2458 MHz (6 samples)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,267 | INFO     | ..............................
[2026-02-26 04:55:56] 2026-02-26 03:55:25,268 | INFO     | . Timing measurements:
[2026-02-26 04:55:56] 2026-02-26 03:55:25,268 | INFO     | . get job = 0 s
[2026-02-26 04:55:56] 2026-02-26 03:55:25,268 | INFO     | . initial setup = 3 s
[2026-02-26 04:55:56] 2026-02-26 03:55:25,268 | INFO     | . payload setup = 53 s
[2026-02-26 04:55:56] 2026-02-26 03:55:25,268 | INFO     | . stage-in = 0 s
[2026-02-26 04:55:56] 2026-02-26 03:55:25,268 | INFO     | . payload execution = 3641 s
[2026-02-26 04:55:56] 2026-02-26 03:55:25,268 | INFO     | . stage-out = 0 s
[2026-02-26 04:55:56] 2026-02-26 03:55:25,268 | INFO     | . log creation = 0 s
[2026-02-26 04:55:56] 2026-02-26 03:55:25,268 | INFO     | ..............................
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | 
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | job summary report
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | --------------------------------------------------
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | PanDA job id: 7030265473
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | task id: 48838596
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | errors: (none)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | pilot state: finished 
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | transexitcode: 0
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | exeerrorcode: 0
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | exeerrordiag: 
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | exitcode: 0
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | exitmsg: OK
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | cpuconsumptiontime: 26884 s
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | nevents: 400
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | neventsw: 0
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | pid: 29510
[2026-02-26 04:55:56] 2026-02-26 03:55:25,315 | INFO     | pgrp: 29510
[2026-02-26 04:55:56] 2026-02-26 03:55:25,316 | INFO     | corecount: 8
[2026-02-26 04:55:56] 2026-02-26 03:55:25,316 | INFO     | event service: False
[2026-02-26 04:55:56] 2026-02-26 03:55:25,316 | INFO     | sizes: {0: 2282372, 11: 2282372, 3698: 2308265, 3699: 2317293, 3701: 2317349, 3704: 2317543}
[2026-02-26 04:55:56] 2026-02-26 03:55:25,316 | INFO     | --------------------------------------------------
[2026-02-26 04:55:56] 2026-02-26 03:55:25,316 | INFO     | 
[2026-02-26 04:55:56] 2026-02-26 03:55:25,316 | INFO     | executing command: ls -lF /tmp/job_11206803/atlas/pilot/slots/0
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,326 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,326 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,326 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,326 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-26 04:55:56] 2026-02-26 03:55:25,326 | INFO     | job 7030265473 has completed (purged errors)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,326 | INFO     | overall cleanup function is called
[2026-02-26 04:55:56] 2026-02-26 03:55:25,662 | WARNING  | process 29510 can no longer be monitored (due to stat problems) - aborting
[2026-02-26 04:55:56] 2026-02-26 03:55:25,742 | INFO     | using path: /tmp/job_11206803/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-26 04:55:56] 2026-02-26 03:55:25,838 | INFO     | number of running child processes to parent process 29510: 1
[2026-02-26 04:55:56] 2026-02-26 03:55:25,838 | INFO     | maximum number of monitored processes: 6
[2026-02-26 04:55:56] 2026-02-26 03:55:25,838 | INFO     | aborting job monitoring since job object (job id=7030265473) has expired
[2026-02-26 04:55:56] 2026-02-26 03:55:26,332 | INFO     | --- collectZombieJob: --- 10, [29510]
[2026-02-26 04:55:56] 2026-02-26 03:55:26,332 | INFO     | zombie collector waiting for pid 29510
[2026-02-26 04:55:56] 2026-02-26 03:55:26,332 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-26 04:55:56] 2026-02-26 03:55:26,332 | INFO     | collected zombie processes
[2026-02-26 04:55:56] 2026-02-26 03:55:26,332 | INFO     | will attempt to kill all subprocesses of pid=29510
[2026-02-26 04:55:56] 2026-02-26 03:55:26,430 | INFO     | process IDs to be killed: [29510] (in reverse order)
[2026-02-26 04:55:56] 2026-02-26 03:55:26,464 | WARNING  | found no corresponding commands to process id(s)
[2026-02-26 04:55:56] 2026-02-26 03:55:26,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-26 04:55:56] 2026-02-26 03:55:26,468 | INFO     | did not find any defunct processes belonging to 29510
[2026-02-26 04:55:56] 2026-02-26 03:55:26,471 | INFO     | did not find any defunct processes belonging to 29510
[2026-02-26 04:55:56] 2026-02-26 03:55:26,471 | INFO     | ready for new job
[2026-02-26 04:55:56] 2026-02-26 03:55:26,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-26 04:55:56] 2026-02-26 03:55:26,472 | INFO     | **************************************
[2026-02-26 04:55:56] 2026-02-26 03:55:26,472 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-26 04:55:56] 2026-02-26 03:55:26,472 | INFO     | **************************************
[2026-02-26 04:55:56] 2026-02-26 03:55:26,472 | INFO     | 
[2026-02-26 04:55:56] 2026-02-26 03:55:26,486 | INFO     | architecture information:
[2026-02-26 04:55:56] 2026-02-26 03:55:26,486 | INFO     | executing command: cat /etc/os-release
[2026-02-26 04:55:56] 2026-02-26 03:55:26,492 | INFO     | cat /etc/os-release:
[2026-02-26 04:55:56] NAME="CentOS Linux"
[2026-02-26 04:55:56] VERSION="7 (Core)"
[2026-02-26 04:55:56] ID="centos"
[2026-02-26 04:55:56] ID_LIKE="rhel fedora"
[2026-02-26 04:55:56] VERSION_ID="7"
[2026-02-26 04:55:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-26 04:55:56] ANSI_COLOR="0;31"
[2026-02-26 04:55:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-26 04:55:56] HOME_URL="https://www.centos.org/"
[2026-02-26 04:55:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-26 04:55:56] 
[2026-02-26 04:55:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-26 04:55:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-26 04:55:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-26 04:55:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-26 04:55:56] 
[2026-02-26 04:55:56] 2026-02-26 03:55:26,493 | INFO     | **************************************
[2026-02-26 04:55:56] 2026-02-26 03:55:26,995 | INFO     | executing command: df -mP /tmp/job_11206803/atlas/pilot/slots/0
[2026-02-26 04:55:56] 2026-02-26 03:55:27,002 | INFO     | sufficient remaining disk space (223494537216 B)
[2026-02-26 04:55:56] 2026-02-26 03:55:27,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-26 04:55:56] 2026-02-26 03:55:27,002 | INFO     | current server update state: UPDATING_FINAL
[2026-02-26 04:55:56] 2026-02-26 03:55:27,002 | INFO     | update_server=False
[2026-02-26 04:55:56] 2026-02-26 03:55:27,002 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-26 04:55:56] 2026-02-26 03:55:27,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-26 04:55:56] 2026-02-26 03:55:27,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-26 04:55:56] 2026-02-26 03:55:27,002 | INFO     | aborting loop
[2026-02-26 04:55:56] 2026-02-26 03:55:27,172 | INFO     | all payload control threads have been joined
[2026-02-26 04:55:56] 2026-02-26 03:55:27,552 | INFO     | all job control threads have been joined
[2026-02-26 04:55:56] 2026-02-26 03:55:27,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-26 04:55:56] 2026-02-26 03:55:28,007 | INFO     | [job] retrieve thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:28,007 | INFO     | [job] job monitor thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:28,008 | INFO     | [job] queue monitor thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:28,019 | INFO     | all data control threads have been joined
[2026-02-26 04:55:56] 2026-02-26 03:55:28,178 | INFO     | [payload] control thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:28,305 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-26 04:55:56] 2026-02-26 03:55:28,473 | INFO     | [job] validate thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:28,474 | INFO     | [payload] validate_post thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:28,493 | INFO     | [job] create_data_payload thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:28,557 | INFO     | [job] control thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:28,640 | INFO     | [payload] validate_pre thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:28,744 | INFO     | [data] copytool_in thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:29,024 | INFO     | [data] control thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:29,319 | INFO     | [payload] execute_payloads thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:29,512 | INFO     | [payload] failed_post thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:29,953 | INFO     | [data] copytool_out thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:32,311 | INFO     | [data] queue_monitor thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:35,186 | INFO     | [monitor] cgroup control has ended
[2026-02-26 04:55:56] 2026-02-26 03:55:37,580 | INFO     | job.realtimelogging is not enabled
[2026-02-26 04:55:56] 2026-02-26 03:55:38,585 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-26 04:55:56] 2026-02-26 03:55:40,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-02-26 04:55:56] 2026-02-26 03:55:45,435 | INFO     | all workflow threads have been joined
[2026-02-26 04:55:56] 2026-02-26 03:55:45,436 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-26 04:55:56] 2026-02-26 03:55:45,436 | INFO     | traces error code: 0
[2026-02-26 04:55:56] 2026-02-26 03:55:45,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-26 04:55:56] 2026-02-26 03:55:56,586 | INFO     | PID=13335 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-26 04:55:56] 2026-02-26 03:55:56,586 | INFO     | .. there are 5 such processes running
[2026-02-26 04:55:56] 2026-02-26 03:55:56,587 | INFO     | found 0 job(s) in 20 queues
[2026-02-26 04:55:56] 2026-02-26 03:55:56,587 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-26 04:55:56] 2026-02-26 03:55:56,587 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-26 04:55:56] 2026-02-26 03:55:56,587 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-26 04:55:56] 2026-02-26 03:55:56,587 | INFO     | [monitor] control thread has ended
[2026-02-26 04:55:56] 2026-02-26 03:55:56,637 [wrapper] ==== pilot stdout END ====
[2026-02-26 04:55:56] 2026-02-26 03:55:56,638 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-26 04:55:56] 2026-02-26 03:55:56,639 [wrapper] pilotpid: 13335
[2026-02-26 04:55:56] 2026-02-26 03:55:56,640 [wrapper] Pilot exit status: 0
[2026-02-26 04:55:56] 2026-02-26 03:55:56,644 [wrapper] pandaids: 7030265473
[2026-02-26 04:55:56] 2026-02-26 03:55:56,668 [wrapper] cleanup supervisor_pilot  9930 13336
[2026-02-26 04:55:56] 2026-02-26 03:55:56,669 [wrapper] Test setup, not cleaning
[2026-02-26 04:55:56] 2026-02-26 03:55:56,670 [wrapper] apfmon messages muted
[2026-02-26 04:55:56] 2026-02-26 03:55:56,671 [wrapper] ==== wrapper stdout END ====
[2026-02-26 04:55:56] 2026-02-26 03:55:56,672 [wrapper] ==== wrapper stderr END ====
[2026-02-26 04:55:56]  *** Error codes and diagnostics ***
[2026-02-26 04:55:56]     "exeErrorCode": 0,
[2026-02-26 04:55:56]     "exeErrorDiag": "",
[2026-02-26 04:55:56]     "pilotErrorCode": 0,
[2026-02-26 04:55:56]     "pilotErrorDiag": "",
[2026-02-26 04:55:56]  *** Listing of results directory ***
[2026-02-26 04:55:56] total 511084
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user    584627 Feb 25 14:22 pilot3.tar.gz
[2026-02-26 04:55:56] -rwx------ 1 mf493845 unix-user     36322 Feb 25 14:30 runpilot2-wrapper.sh
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user      5111 Feb 25 14:31 queuedata.json
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user       100 Feb 26 02:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-26 04:55:56] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb 26 02:40 run_atlas
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user       105 Feb 26 02:40 job.xml
[2026-02-26 04:55:56] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 26 03:53 start_atlas.sh
[2026-02-26 04:55:56] drwxrwx--x 2 mf493845 unix-user       100 Feb 26 03:53 shared
[2026-02-26 04:55:56] -rw-r--r-- 2 mf493845 unix-user    597949 Feb 26 03:53 input.tar.gz
[2026-02-26 04:55:56] -rw-r--r-- 2 mf493845 unix-user 285977049 Feb 26 03:53 EVNT.48220237._000035.pool.root.1
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user         0 Feb 26 03:53 boinc_setup_complete
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user      6390 Feb 26 03:53 init_data.xml
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user      8192 Feb 26 03:53 boinc_mmap_file
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user         0 Feb 26 03:53 boinc_lockfile
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user      2541 Feb 26 03:53 pandaJob.out
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user    997648 Feb 26 03:53 agis_schedconf.cvmfs.json
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user   1513015 Feb 26 03:53 agis_ddmendpoints.agis.ALL.json
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user       420 Feb 26 03:53 workernode_map.json
[2026-02-26 04:55:56] drwx------ 5 mf493845 unix-user       440 Feb 26 03:53 pilot3
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user 231709308 Feb 26 04:54 HITS.48838596._000588.pool.root.1
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user      1018 Feb 26 04:55 memory_monitor_summary.json
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user    312380 Feb 26 04:55 log.48838596._000588.job.log.tgz.1
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user      6311 Feb 26 04:55 heartbeat.json
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user       820 Feb 26 04:55 pilotlog.txt
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user        95 Feb 26 04:55 pilot_heartbeat.json
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user    571943 Feb 26 04:55 log.48838596._000588.job.log.1
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user       357 Feb 26 04:55 output.list
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user       620 Feb 26 04:55 runtime_log
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user    901120 Feb 26 04:55 result.tar.gz
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user      9219 Feb 26 04:55 runtime_log.err
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user       644 Feb 26 04:55 mFzKDmD9TF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmTRyKDmFhqNFo.diag
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user     22221 Feb 26 04:55 stderr.txt
[2026-02-26 04:55:56] HITS file was successfully produced:
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user 231709308 Feb 26 04:54 shared/HITS.pool.root.1
[2026-02-26 04:55:56]  *** Contents of shared directory: ***
[2026-02-26 04:55:56] total 507036
[2026-02-26 04:55:56] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 26 03:53 start_atlas.sh
[2026-02-26 04:55:56] -rw-r--r-- 2 mf493845 unix-user    597949 Feb 26 03:53 input.tar.gz
[2026-02-26 04:55:56] -rw-r--r-- 2 mf493845 unix-user 285977049 Feb 26 03:53 ATLAS.root_0
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user 231709308 Feb 26 04:54 HITS.pool.root.1
[2026-02-26 04:55:56] -rw------- 1 mf493845 unix-user    901120 Feb 26 04:55 result.tar.gz
04:55:58 (3024): run_atlas exited; CPU time 26934.219673
04:55:58 (3024): called boinc_finish(0)

</stderr_txt>
]]>

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