Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:17:06 (194244): wrapper (7.7.26015): starting
11:17:06 (194244): wrapper: running run_atlas (--nthreads 3)
[2026-02-26 11:17:06] Arguments: --nthreads 3
[2026-02-26 11:17:06] Threads: 3
[2026-02-26 11:17:06] Checking for CVMFS
[2026-02-26 11:17:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-26 11:17:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-26 11:17:07] Running cvmfs_config stat atlas.cern.ch
[2026-02-26 11:17:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-26 11:17:07] 2.9.2.0 38641 1031 73004 156651 2 49 28102522 36864000 0 130560 0 441194 99.977 50601 15593 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-26 11:17:07] CVMFS is ok
[2026-02-26 11:17:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-26 11:17:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-26 11:17:07] Further information can be found at the LHC@home message board.
[2026-02-26 11:17:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-26 11:17:07] Checking for apptainer binary...
[2026-02-26 11:17:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-26 11:17:07] Running /usr/bin/apptainer --version
[2026-02-26 11:17:07] apptainer version 1.4.1-1.1
[2026-02-26 11:17:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-26 11:17:07] magicA161
[2026-02-26 11:17:07] apptainer works
[2026-02-26 11:17:07] Set ATHENA_PROC_NUMBER=3
[2026-02-26 11:17:07] Set ATHENA_CORE_NUMBER=3
[2026-02-26 11:17:07] Starting ATLAS job with PandaID=7030348229
[2026-02-26 11:17:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-26 12:57:36]  *** The last 200 lines of the pilot log: ***
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | job 7030348229 has completed (purged errors)
[2026-02-26 12:57:36] 2026-02-26 11:57:04,458 | INFO     | overall cleanup function is called
[2026-02-26 12:57:36] 2026-02-26 11:57:05,465 | INFO     | --- collectZombieJob: --- 10, [202717]
[2026-02-26 12:57:36] 2026-02-26 11:57:05,465 | INFO     | zombie collector waiting for pid 202717
[2026-02-26 12:57:36] 2026-02-26 11:57:05,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-26 12:57:36] 2026-02-26 11:57:05,465 | INFO     | collected zombie processes
[2026-02-26 12:57:36] 2026-02-26 11:57:05,465 | INFO     | will attempt to kill all subprocesses of pid=202717
[2026-02-26 12:57:36] 2026-02-26 11:57:05,505 | INFO     | process IDs to be killed: [202717] (in reverse order)
[2026-02-26 12:57:36] 2026-02-26 11:57:05,531 | WARNING  | found no corresponding commands to process id(s)
[2026-02-26 12:57:36] 2026-02-26 11:57:05,531 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-26 12:57:36] 2026-02-26 11:57:05,532 | INFO     | did not find any defunct processes belonging to 202717
[2026-02-26 12:57:36] 2026-02-26 11:57:05,533 | INFO     | did not find any defunct processes belonging to 202717
[2026-02-26 12:57:36] 2026-02-26 11:57:05,533 | INFO     | ready for new job
[2026-02-26 12:57:36] 2026-02-26 11:57:05,533 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-26 12:57:36] 2026-02-26 11:57:05,534 | INFO     | **************************************
[2026-02-26 12:57:36] 2026-02-26 11:57:05,534 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-26 12:57:36] 2026-02-26 11:57:05,534 | INFO     | **************************************
[2026-02-26 12:57:36] 2026-02-26 11:57:05,534 | INFO     | 
[2026-02-26 12:57:36] 2026-02-26 11:57:05,534 | INFO     | architecture information:
[2026-02-26 12:57:36] 2026-02-26 11:57:05,534 | INFO     | executing command: cat /etc/os-release
[2026-02-26 12:57:36] 2026-02-26 11:57:05,544 | INFO     | cat /etc/os-release:
[2026-02-26 12:57:36] NAME="CentOS Linux"
[2026-02-26 12:57:36] VERSION="7 (Core)"
[2026-02-26 12:57:36] ID="centos"
[2026-02-26 12:57:36] ID_LIKE="rhel fedora"
[2026-02-26 12:57:36] VERSION_ID="7"
[2026-02-26 12:57:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-26 12:57:36] ANSI_COLOR="0;31"
[2026-02-26 12:57:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-26 12:57:36] HOME_URL="https://www.centos.org/"
[2026-02-26 12:57:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-26 12:57:36] 
[2026-02-26 12:57:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-26 12:57:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-26 12:57:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-26 12:57:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-26 12:57:36] 
[2026-02-26 12:57:36] 2026-02-26 11:57:05,544 | INFO     | **************************************
[2026-02-26 12:57:36] 2026-02-26 11:57:06,047 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-26 12:57:36] 2026-02-26 11:57:06,061 | INFO     | sufficient remaining disk space (375938613248 B)
[2026-02-26 12:57:36] 2026-02-26 11:57:06,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-26 12:57:36] 2026-02-26 11:57:06,061 | INFO     | current server update state: UPDATING_FINAL
[2026-02-26 12:57:36] 2026-02-26 11:57:06,061 | INFO     | update_server=False
[2026-02-26 12:57:36] 2026-02-26 11:57:06,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-26 12:57:36] 2026-02-26 11:57:06,062 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-26 12:57:36] 2026-02-26 11:57:06,062 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-26 12:57:36] 2026-02-26 11:57:06,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-26 12:57:36] 2026-02-26 11:57:06,062 | INFO     | aborting loop
[2026-02-26 12:57:36] 2026-02-26 11:57:06,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-26 12:57:36] 2026-02-26 11:57:06,567 | INFO     | job.realtimelogging is not enabled
[2026-02-26 12:57:36] 2026-02-26 11:57:06,853 | INFO     | all data control threads have been joined
[2026-02-26 12:57:36] 2026-02-26 11:57:06,979 | INFO     | all job control threads have been joined
[2026-02-26 12:57:36] 2026-02-26 11:57:07,067 | INFO     | [job] retrieve thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:07,068 | INFO     | [job] queue monitor thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:07,068 | INFO     | [job] job monitor thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:07,106 | INFO     | [payload] execute_payloads thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:07,170 | INFO     | [data] copytool_in thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:07,333 | INFO     | [payload] validate_post thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:07,493 | INFO     | all payload control threads have been joined
[2026-02-26 12:57:36] 2026-02-26 11:57:07,573 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:07,803 | INFO     | [payload] failed_post thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:07,858 | INFO     | [data] control thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:07,984 | INFO     | [job] control thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:08,401 | INFO     | [job] validate thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:08,443 | INFO     | [data] copytool_out thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:08,457 | INFO     | [job] create_data_payload thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:08,499 | INFO     | [payload] validate_pre thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:08,499 | INFO     | [payload] control thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:10,069 | INFO     | [data] queue_monitor thread has finished
[2026-02-26 12:57:36] 2026-02-26 11:57:24,462 | INFO     | [monitor] cgroup control has ended
[2026-02-26 12:57:36] 2026-02-26 11:57:26,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216116426560)>', '<ExcThread(monitor, started 140215247173376)>']
[2026-02-26 12:57:36] 2026-02-26 11:57:31,125 | INFO     | all workflow threads have been joined
[2026-02-26 12:57:36] 2026-02-26 11:57:31,125 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-26 12:57:36] 2026-02-26 11:57:31,125 | INFO     | traces error code: 0
[2026-02-26 12:57:36] 2026-02-26 11:57:31,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-26 12:57:36] 2026-02-26 11:57:36,739 | INFO     | PID=198289 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-26 12:57:36] 2026-02-26 11:57:36,739 | INFO     | found 0 job(s) in 20 queues
[2026-02-26 12:57:36] 2026-02-26 11:57:36,739 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-26 12:57:36] 2026-02-26 11:57:36,739 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-26 12:57:36] 2026-02-26 11:57:36,739 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-26 12:57:36] 2026-02-26 11:57:36,739 | INFO     | [monitor] control thread has ended
[2026-02-26 12:57:36] 2026-02-26 11:57:36,788 [wrapper] ==== pilot stdout END ====
[2026-02-26 12:57:36] 2026-02-26 11:57:36,790 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-26 12:57:36] 2026-02-26 11:57:36,793 [wrapper] pilotpid: 198289
[2026-02-26 12:57:36] 2026-02-26 11:57:36,795 [wrapper] Pilot exit status: 0
[2026-02-26 12:57:36] 2026-02-26 11:57:36,803 [wrapper] pandaids: 7030348229
[2026-02-26 12:57:36] 2026-02-26 11:57:36,820 [wrapper] cleanup supervisor_pilot  208136 198290
[2026-02-26 12:57:36] 2026-02-26 11:57:36,822 [wrapper] Test setup, not cleaning
[2026-02-26 12:57:36] 2026-02-26 11:57:36,825 [wrapper] apfmon messages muted
[2026-02-26 12:57:36] 2026-02-26 11:57:36,827 [wrapper] ==== wrapper stdout END ====
[2026-02-26 12:57:36] 2026-02-26 11:57:36,830 [wrapper] ==== wrapper stderr END ====
[2026-02-26 12:57:36]  *** Error codes and diagnostics ***
[2026-02-26 12:57:36]     "exeErrorCode": 0,
[2026-02-26 12:57:36]     "exeErrorDiag": "",
[2026-02-26 12:57:36]     "pilotErrorCode": 0,
[2026-02-26 12:57:36]     "pilotErrorDiag": "",
[2026-02-26 12:57:36]  *** Listing of results directory ***
[2026-02-26 12:57:36] total 508188
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc    584627 Feb 25 17:55 pilot3.tar.gz
[2026-02-26 12:57:36] -rwx------ 1 boinc boinc     36322 Feb 25 17:55 runpilot2-wrapper.sh
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc      5111 Feb 25 17:58 queuedata.json
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc       100 Feb 26 11:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-26 12:57:36] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 11:17 run_atlas
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc       105 Feb 26 11:17 job.xml
[2026-02-26 12:57:36] -rw-r--r-- 2 boinc boinc 287699966 Feb 26 11:17 EVNT.48220165._000014.pool.root.1
[2026-02-26 12:57:36] drwxrwx--x 2 boinc boinc      4096 Feb 26 11:17 shared
[2026-02-26 12:57:36] -rw-r--r-- 2 boinc boinc    597942 Feb 26 11:17 input.tar.gz
[2026-02-26 12:57:36] -rw-r--r-- 2 boinc boinc     15845 Feb 26 11:17 start_atlas.sh
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc         0 Feb 26 11:17 boinc_setup_complete
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc      6448 Feb 26 11:17 init_data.xml
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc         0 Feb 26 11:17 boinc_lockfile
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc      2552 Feb 26 11:17 pandaJob.out
[2026-02-26 12:57:36] -rw------- 1 boinc boinc    997714 Feb 26 11:17 agis_schedconf.cvmfs.json
[2026-02-26 12:57:36] -rw------- 1 boinc boinc   1513015 Feb 26 11:17 agis_ddmendpoints.agis.ALL.json
[2026-02-26 12:57:36] -rw------- 1 boinc boinc       426 Feb 26 11:17 workernode_map.json
[2026-02-26 12:57:36] drwx------ 5 boinc boinc      4096 Feb 26 11:17 pilot3
[2026-02-26 12:57:36] -rw------- 1 boinc boinc 226493605 Feb 26 12:56 HITS.48838492._000343.pool.root.1
[2026-02-26 12:57:36] -rw------- 1 boinc boinc        95 Feb 26 12:56 pilot_heartbeat.json
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc       529 Feb 26 12:56 boinc_task_state.xml
[2026-02-26 12:57:36] -rw------- 1 boinc boinc      1014 Feb 26 12:57 memory_monitor_summary.json
[2026-02-26 12:57:36] -rw------- 1 boinc boinc    272180 Feb 26 12:57 log.48838492._000343.job.log.tgz.1
[2026-02-26 12:57:36] -rw------- 1 boinc boinc      6301 Feb 26 12:57 heartbeat.json
[2026-02-26 12:57:36] -rw------- 1 boinc boinc       746 Feb 26 12:57 pilotlog.txt
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc      8192 Feb 26 12:57 boinc_mmap_file
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc        27 Feb 26 12:57 wrapper_checkpoint.txt
[2026-02-26 12:57:36] -rw------- 1 boinc boinc    867124 Feb 26 12:57 log.48838492._000343.job.log.1
[2026-02-26 12:57:36] -rw------- 1 boinc boinc       357 Feb 26 12:57 output.list
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc       620 Feb 26 12:57 runtime_log
[2026-02-26 12:57:36] -rw------- 1 boinc boinc   1157120 Feb 26 12:57 result.tar.gz
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc      8911 Feb 26 12:57 runtime_log.err
[2026-02-26 12:57:36] -rw------- 1 boinc boinc       660 Feb 26 12:57 rUuMDmqLXF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmjMzKDmHPGDWo.diag
[2026-02-26 12:57:36] -rw-r--r-- 1 boinc boinc     12221 Feb 26 12:57 stderr.txt
[2026-02-26 12:57:36] HITS file was successfully produced:
[2026-02-26 12:57:36] -rw------- 1 boinc boinc 226493605 Feb 26 12:56 shared/HITS.pool.root.1
[2026-02-26 12:57:36]  *** Contents of shared directory: ***
[2026-02-26 12:57:36] total 503884
[2026-02-26 12:57:36] -rw-r--r-- 2 boinc boinc 287699966 Feb 26 11:17 ATLAS.root_0
[2026-02-26 12:57:36] -rw-r--r-- 2 boinc boinc    597942 Feb 26 11:17 input.tar.gz
[2026-02-26 12:57:36] -rw-r--r-- 2 boinc boinc     15845 Feb 26 11:17 start_atlas.sh
[2026-02-26 12:57:36] -rw------- 1 boinc boinc 226493605 Feb 26 12:56 HITS.pool.root.1
[2026-02-26 12:57:36] -rw------- 1 boinc boinc   1157120 Feb 26 12:57 result.tar.gz
12:57:38 (194244): run_atlas exited; CPU time 17304.345273
12:57:38 (194244): called boinc_finish(0)

</stderr_txt>
]]>

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