Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
17:45:38 (378067): wrapper (7.7.26015): starting
17:45:38 (378067): wrapper: running run_atlas (--nthreads 8)
[2026-02-25 17:45:38] Arguments: --nthreads 8
[2026-02-25 17:45:38] Threads: 8
[2026-02-25 17:45:38] Checking for CVMFS
[2026-02-25 17:45:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-25 17:45:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-25 17:45:39] Running cvmfs_config stat atlas.cern.ch
[2026-02-25 17:45:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-25 17:45:39] 2.13.3.0 4833 360 49880 156636 0 50 1706110 20480001 1924 130560 0 1093226 99.402 668802 288 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-25 17:45:39] CVMFS is ok
[2026-02-25 17:45:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-25 17:45:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-25 17:45:39] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-25 17:45:39] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-25 17:45:39] Further information can be found at the LHC@home message board.
[2026-02-25 17:45:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-25 17:45:39] Checking for apptainer binary...
[2026-02-25 17:45:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-25 17:45:39] Running /usr/bin/apptainer --version
[2026-02-25 17:45:39] apptainer version 1.4.5
[2026-02-25 17:45:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-25 17:45:39] b650aorus
[2026-02-25 17:45:39] apptainer works
[2026-02-25 17:45:39] Set ATHENA_PROC_NUMBER=8
[2026-02-25 17:45:39] Set ATHENA_CORE_NUMBER=8
[2026-02-25 17:45:39] Starting ATLAS job with PandaID=7030338302
[2026-02-25 17:45:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-25 18:33:22]  *** The last 200 lines of the pilot log: ***
[2026-02-25 18:33:22]  is_altstaged=None
[2026-02-25 18:33:22]  is_tar=False
[2026-02-25 18:33:22]  lfn=log.48838432._001608.job.log.tgz.1
[2026-02-25 18:33:22]  mtime=0
[2026-02-25 18:33:22]  protocol_id=None
[2026-02-25 18:33:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-25 18:33:22]  replicas=None
[2026-02-25 18:33:22]  scope=mc23_13p6TeV
[2026-02-25 18:33:22]  status=None
[2026-02-25 18:33:22]  status_code=0
[2026-02-25 18:33:22]  storage_token=
[2026-02-25 18:33:22]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-7030338302/log.48838432._001608.job.log.tgz.1
[2026-02-25 18:33:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/d3/log.48838432._001608.job.log.tgz.1
[2026-02-25 18:33:22]  workdir=None
[2026-02-25 18:33:22] ]
[2026-02-25 18:33:22] 2026-02-26 01:32:49,336 | INFO     | transferring file log.48838432._001608.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-7030338302/log.48838432._001608.job.log.tgz.1 to /var/lib/boinc
[2026-02-25 18:33:22] 2026-02-26 01:32:49,336 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-7030338302/log.48838432._001608.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.488384
[2026-02-25 18:33:22] 2026-02-26 01:32:49,346 | INFO     | adding to output.list: log.48838432._001608.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/d3/log.48838432._001608.job.log.tg
[2026-02-25 18:33:22] 2026-02-26 01:32:49,346 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-25 18:33:22] 2026-02-26 01:32:49,346 | INFO     | summary of transferred files:
[2026-02-25 18:33:22] 2026-02-26 01:32:49,346 | INFO     |  -- lfn=log.48838432._001608.job.log.tgz.1, status_code=0, status=transferred
[2026-02-25 18:33:22] 2026-02-26 01:32:49,347 | INFO     | stage-out finished correctly
[2026-02-25 18:33:22] 2026-02-26 01:32:49,386 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-25 18:33:22] 2026-02-26 01:32:49,598 | INFO     | time since job start (2816s) is within the limit (349056.0s)
[2026-02-25 18:33:22] 2026-02-26 01:32:50,923 | INFO     | job 7030338302 has state=finished
[2026-02-25 18:33:22] 2026-02-26 01:32:50,923 | INFO     | preparing for final server update for job 7030338302 in state='finished'
[2026-02-25 18:33:22] 2026-02-26 01:32:50,923 | INFO     | reading metadata from: /var/lib/boinc-client/slots/1/PanDA_Pilot-7030338302/jobReport.json
[2026-02-25 18:33:22] 2026-02-26 01:32:50,924 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/1/workernode_map.json
[2026-02-25 18:33:22] 2026-02-26 01:32:50,925 | INFO     | this job has now completed (state=finished)
[2026-02-25 18:33:22] 2026-02-26 01:32:50,925 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-25 18:33:22] 2026-02-26 01:32:50,925 | INFO     | log transfer has been attempted: DONE
[2026-02-25 18:33:22] 2026-02-26 01:32:50,925 | INFO     | job 7030338302 has finished - writing final server update
[2026-02-25 18:33:22] 2026-02-26 01:32:50,925 | INFO     | total number of processed events: 400 (read)
[2026-02-25 18:33:22] 2026-02-26 01:32:50,928 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-7030338302/memory_monitor_summary.json (trf name=prmon)
[2026-02-25 18:33:22] 2026-02-26 01:32:50,928 | INFO     | extracted standard info from prmon json
[2026-02-25 18:33:22] 2026-02-26 01:32:50,928 | INFO     | extracted standard memory fields from prmon json
[2026-02-25 18:33:22] 2026-02-26 01:32:50,928 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-25 18:33:22] 2026-02-26 01:32:50,928 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-25 18:33:22] 2026-02-26 01:32:50,928 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | fitting pss+swap vs Time
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | sum of square deviations: 18381740.0
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | sum of deviations: -988909003.0000001
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | mean x: 1772068231.0
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | mean y: 2596165.769230769
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | intersect: 95337108979.36488
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | chi2: 0.005179002829710993
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | current memory leak: -53.80 B/s (using 39 data points, chi2=0.01)
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | could have reported an average CPU frequency of 3962 MHz (5 samples)
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | ..............................
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | . Timing measurements:
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | . get job = 0 s
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | . initial setup = 6 s
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | . payload setup = 1 s
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | . stage-in = 0 s
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | . payload execution = 2799 s
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | . stage-out = 0 s
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | . log creation = 0 s
[2026-02-25 18:33:22] 2026-02-26 01:32:50,929 | INFO     | ..............................
[2026-02-25 18:33:22] 2026-02-26 01:32:51,178 | INFO     | 
[2026-02-25 18:33:22] 2026-02-26 01:32:51,178 | INFO     | job summary report
[2026-02-25 18:33:22] 2026-02-26 01:32:51,178 | INFO     | --------------------------------------------------
[2026-02-25 18:33:22] 2026-02-26 01:32:51,178 | INFO     | PanDA job id: 7030338302
[2026-02-25 18:33:22] 2026-02-26 01:32:51,178 | INFO     | task id: 48838432
[2026-02-25 18:33:22] 2026-02-26 01:32:51,178 | INFO     | errors: (none)
[2026-02-25 18:33:22] 2026-02-26 01:32:51,178 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | pilot state: finished 
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | transexitcode: 0
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | exeerrorcode: 0
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | exeerrordiag: 
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | exitcode: 0
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | exitmsg: OK
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | cpuconsumptiontime: 20817 s
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | nevents: 400
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | neventsw: 0
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | pid: 386908
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | pgrp: 386908
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | corecount: 8
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | event service: False
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | sizes: {0: 2282298, 11: 2282298, 2804: 2307735, 2805: 2316803, 2807: 2316973}
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | --------------------------------------------------
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | 
[2026-02-25 18:33:22] 2026-02-26 01:32:51,179 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-02-25 18:33:22] 2026-02-26 01:32:51,190 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,190 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | job 7030338302 has completed (purged errors)
[2026-02-25 18:33:22] 2026-02-26 01:32:51,191 | INFO     | overall cleanup function is called
[2026-02-25 18:33:22] 2026-02-26 01:32:51,206 | WARNING  | process 386908 can no longer be monitored (due to stat problems) - aborting
[2026-02-25 18:33:22] 2026-02-26 01:32:51,258 | INFO     | using path: /var/lib/boinc-client/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-25 18:33:22] 2026-02-26 01:32:51,332 | INFO     | number of running child processes to parent process 386908: 1
[2026-02-25 18:33:22] 2026-02-26 01:32:51,332 | INFO     | maximum number of monitored processes: 6
[2026-02-25 18:33:22] 2026-02-26 01:32:51,332 | INFO     | aborting job monitoring since job object (job id=7030338302) has expired
[2026-02-25 18:33:22] 2026-02-26 01:32:52,198 | INFO     | --- collectZombieJob: --- 10, [386908]
[2026-02-25 18:33:22] 2026-02-26 01:32:52,198 | INFO     | zombie collector waiting for pid 386908
[2026-02-25 18:33:22] 2026-02-26 01:32:52,198 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-25 18:33:22] 2026-02-26 01:32:52,198 | INFO     | collected zombie processes
[2026-02-25 18:33:22] 2026-02-26 01:32:52,198 | INFO     | will attempt to kill all subprocesses of pid=386908
[2026-02-25 18:33:22] 2026-02-26 01:32:52,268 | INFO     | process IDs to be killed: [386908] (in reverse order)
[2026-02-25 18:33:22] 2026-02-26 01:32:52,301 | WARNING  | found no corresponding commands to process id(s)
[2026-02-25 18:33:22] 2026-02-26 01:32:52,301 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-25 18:33:22] 2026-02-26 01:32:52,304 | INFO     | did not find any defunct processes belonging to 386908
[2026-02-25 18:33:22] 2026-02-26 01:32:52,306 | INFO     | did not find any defunct processes belonging to 386908
[2026-02-25 18:33:22] 2026-02-26 01:32:52,306 | INFO     | ready for new job
[2026-02-25 18:33:22] 2026-02-26 01:32:52,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-25 18:33:22] 2026-02-26 01:32:52,307 | INFO     | **************************************
[2026-02-25 18:33:22] 2026-02-26 01:32:52,307 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-25 18:33:22] 2026-02-26 01:32:52,307 | INFO     | **************************************
[2026-02-25 18:33:22] 2026-02-26 01:32:52,307 | INFO     | 
[2026-02-25 18:33:22] 2026-02-26 01:32:52,308 | INFO     | architecture information:
[2026-02-25 18:33:22] 2026-02-26 01:32:52,308 | INFO     | executing command: cat /etc/os-release
[2026-02-25 18:33:22] 2026-02-26 01:32:52,316 | INFO     | cat /etc/os-release:
[2026-02-25 18:33:22] NAME="CentOS Linux"
[2026-02-25 18:33:22] VERSION="7 (Core)"
[2026-02-25 18:33:22] ID="centos"
[2026-02-25 18:33:22] ID_LIKE="rhel fedora"
[2026-02-25 18:33:22] VERSION_ID="7"
[2026-02-25 18:33:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-25 18:33:22] ANSI_COLOR="0;31"
[2026-02-25 18:33:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-25 18:33:22] HOME_URL="https://www.centos.org/"
[2026-02-25 18:33:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-25 18:33:22] 
[2026-02-25 18:33:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-25 18:33:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-25 18:33:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-25 18:33:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-25 18:33:22] 
[2026-02-25 18:33:22] 2026-02-26 01:32:52,317 | INFO     | **************************************
[2026-02-25 18:33:22] 2026-02-26 01:32:52,819 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-02-25 18:33:22] 2026-02-26 01:32:52,828 | INFO     | sufficient remaining disk space (167194394624 B)
[2026-02-25 18:33:22] 2026-02-26 01:32:52,828 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-25 18:33:22] 2026-02-26 01:32:52,828 | INFO     | current server update state: UPDATING_FINAL
[2026-02-25 18:33:22] 2026-02-26 01:32:52,828 | INFO     | update_server=False
[2026-02-25 18:33:22] 2026-02-26 01:32:52,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-25 18:33:22] 2026-02-26 01:32:52,828 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-25 18:33:22] 2026-02-26 01:32:52,828 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-25 18:33:22] 2026-02-26 01:32:52,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-25 18:33:22] 2026-02-26 01:32:52,828 | INFO     | aborting loop
[2026-02-25 18:33:22] 2026-02-26 01:32:52,855 | INFO     | all data control threads have been joined
[2026-02-25 18:33:22] 2026-02-26 01:32:53,462 | INFO     | all job control threads have been joined
[2026-02-25 18:33:22] 2026-02-26 01:32:53,833 | INFO     | [job] retrieve thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:53,834 | INFO     | [job] queue monitor thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:53,834 | INFO     | [job] job monitor thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:53,860 | INFO     | [data] control thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:53,862 | INFO     | [data] copytool_in thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:53,902 | INFO     | all payload control threads have been joined
[2026-02-25 18:33:22] 2026-02-26 01:32:53,952 | INFO     | [payload] validate_post thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:54,467 | INFO     | [job] control thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:54,834 | INFO     | [data] copytool_out thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:54,907 | INFO     | [payload] control thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:55,027 | INFO     | [payload] failed_post thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:55,111 | INFO     | [payload] execute_payloads thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:55,186 | INFO     | [job] create_data_payload thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:55,239 | INFO     | [job] validate thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:55,244 | INFO     | [payload] validate_pre thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:32:55,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-25 18:33:22] 2026-02-26 01:32:57,048 | INFO     | [monitor] cgroup control has ended
[2026-02-25 18:33:22] 2026-02-26 01:32:59,433 | INFO     | [data] queue_monitor thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:33:02,947 | INFO     | job.realtimelogging is not enabled
[2026-02-25 18:33:22] 2026-02-26 01:33:03,952 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-25 18:33:22] 2026-02-26 01:33:04,203 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129915665344320)>', '<ExcThread(monitor, started 129915034789632)>']
[2026-02-25 18:33:22] 2026-02-26 01:33:09,228 | INFO     | all workflow threads have been joined
[2026-02-25 18:33:22] 2026-02-26 01:33:09,228 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-25 18:33:22] 2026-02-26 01:33:09,228 | INFO     | traces error code: 0
[2026-02-25 18:33:22] 2026-02-26 01:33:09,228 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-25 18:33:22] 2026-02-26 01:33:22,755 | INFO     | PID=382286 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-25 18:33:22] 2026-02-26 01:33:22,755 | INFO     | .. there are 4 such processes running
[2026-02-25 18:33:22] 2026-02-26 01:33:22,755 | INFO     | found 0 job(s) in 20 queues
[2026-02-25 18:33:22] 2026-02-26 01:33:22,755 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-25 18:33:22] 2026-02-26 01:33:22,755 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-25 18:33:22] 2026-02-26 01:33:22,755 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-25 18:33:22] 2026-02-26 01:33:22,755 | CRITICAL | thread 'MainThread' is not alive
[2026-02-25 18:33:22] 2026-02-26 01:33:22,755 | INFO     | [monitor] control thread has ended
[2026-02-25 18:33:22] 2026-02-26 01:33:22,810 [wrapper] ==== pilot stdout END ====
[2026-02-25 18:33:22] 2026-02-26 01:33:22,812 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-25 18:33:22] 2026-02-26 01:33:22,813 [wrapper] pilotpid: 382286
[2026-02-25 18:33:22] 2026-02-26 01:33:22,815 [wrapper] Pilot exit status: 0
[2026-02-25 18:33:22] 2026-02-26 01:33:22,819 [wrapper] pandaids: 7030338302
[2026-02-25 18:33:22] 2026-02-26 01:33:22,842 [wrapper] cleanup supervisor_pilot  430945 382287
[2026-02-25 18:33:22] 2026-02-26 01:33:22,843 [wrapper] Test setup, not cleaning
[2026-02-25 18:33:22] 2026-02-26 01:33:22,845 [wrapper] apfmon messages muted
[2026-02-25 18:33:22] 2026-02-26 01:33:22,846 [wrapper] ==== wrapper stdout END ====
[2026-02-25 18:33:22] 2026-02-26 01:33:22,847 [wrapper] ==== wrapper stderr END ====
[2026-02-25 18:33:22]  *** Error codes and diagnostics ***
[2026-02-25 18:33:22]     "exeErrorCode": 0,
[2026-02-25 18:33:22]     "exeErrorDiag": "",
[2026-02-25 18:33:22]     "pilotErrorCode": 0,
[2026-02-25 18:33:22]     "pilotErrorDiag": "",
[2026-02-25 18:33:22]  *** Listing of results directory ***
[2026-02-25 18:33:22] total 506616
[2026-02-25 18:33:22] -rwx------ 1 boinc boinc     36322 Feb 25 09:54 runpilot2-wrapper.sh
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc    584627 Feb 25 09:55 pilot3.tar.gz
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc      5111 Feb 25 09:56 queuedata.json
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc       100 Feb 25 17:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-25 18:33:22] -rwxr-xr-x 1 boinc boinc      7986 Feb 25 17:45 run_atlas
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc       105 Feb 25 17:45 job.xml
[2026-02-25 18:33:22] -rw-r--r-- 2 boinc boinc     15845 Feb 25 17:45 start_atlas.sh
[2026-02-25 18:33:22] drwxrwx--x 2 boinc boinc      4096 Feb 25 17:45 shared
[2026-02-25 18:33:22] -rw-r--r-- 2 boinc boinc    597978 Feb 25 17:45 input.tar.gz
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc      9950 Feb 25 17:45 init_data.xml
[2026-02-25 18:33:22] -rw-r--r-- 2 boinc boinc 288353488 Feb 25 17:45 EVNT.48220101._000065.pool.root.1
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc         0 Feb 25 17:45 boinc_lockfile
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc      2580 Feb 25 17:45 pandaJob.out
[2026-02-25 18:33:22] -rw------- 1 boinc boinc    997624 Feb 25 17:45 agis_schedconf.cvmfs.json
[2026-02-25 18:33:22] -rw------- 1 boinc boinc   1513015 Feb 25 17:45 agis_ddmendpoints.agis.ALL.json
[2026-02-25 18:33:22] -rw------- 1 boinc boinc       417 Feb 25 17:45 workernode_map.json
[2026-02-25 18:33:22] drwx------ 5 boinc boinc      4096 Feb 25 17:45 pilot3
[2026-02-25 18:33:22] -rw------- 1 boinc boinc 225014024 Feb 25 18:32 HITS.48838432._001608.pool.root.1
[2026-02-25 18:33:22] -rw------- 1 boinc boinc      1023 Feb 25 18:32 memory_monitor_summary.json
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc       529 Feb 25 18:32 boinc_task_state.xml
[2026-02-25 18:33:22] -rw------- 1 boinc boinc    292351 Feb 25 18:32 log.48838432._001608.job.log.tgz.1
[2026-02-25 18:33:22] -rw------- 1 boinc boinc      6280 Feb 25 18:32 heartbeat.json
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc        27 Feb 25 18:33 wrapper_checkpoint.txt
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc      8192 Feb 25 18:33 boinc_mmap_file
[2026-02-25 18:33:22] -rw------- 1 boinc boinc       891 Feb 25 18:33 pilotlog.txt
[2026-02-25 18:33:22] -rw------- 1 boinc boinc        95 Feb 25 18:33 pilot_heartbeat.json
[2026-02-25 18:33:22] -rw------- 1 boinc boinc    444887 Feb 25 18:33 log.48838432._001608.job.log.1
[2026-02-25 18:33:22] -rw------- 1 boinc boinc       357 Feb 25 18:33 output.list
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc       620 Feb 25 18:33 runtime_log
[2026-02-25 18:33:22] -rw------- 1 boinc boinc    757760 Feb 25 18:33 result.tar.gz
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc      8928 Feb 25 18:33 runtime_log.err
[2026-02-25 18:33:22] -rw------- 1 boinc boinc       655 Feb 25 18:33 2ZIKDmfKXF9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm7z0KDmgD3Fqn.diag
[2026-02-25 18:33:22] -rw-r--r-- 1 boinc boinc     21617 Feb 25 18:33 stderr.txt
[2026-02-25 18:33:22] HITS file was successfully produced:
[2026-02-25 18:33:22] -rw------- 1 boinc boinc 225014024 Feb 25 18:32 shared/HITS.pool.root.1
[2026-02-25 18:33:22]  *** Contents of shared directory: ***
[2026-02-25 18:33:22] total 502688
[2026-02-25 18:33:22] -rw-r--r-- 2 boinc boinc     15845 Feb 25 17:45 start_atlas.sh
[2026-02-25 18:33:22] -rw-r--r-- 2 boinc boinc    597978 Feb 25 17:45 input.tar.gz
[2026-02-25 18:33:22] -rw-r--r-- 2 boinc boinc 288353488 Feb 25 17:45 ATLAS.root_0
[2026-02-25 18:33:22] -rw------- 1 boinc boinc 225014024 Feb 25 18:32 HITS.pool.root.1
[2026-02-25 18:33:22] -rw------- 1 boinc boinc    757760 Feb 25 18:33 result.tar.gz
18:33:24 (378067): run_atlas exited; CPU time 20828.409739
18:33:24 (378067): called boinc_finish(0)

</stderr_txt>
]]>

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