Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:17:36 (181456): wrapper (7.7.26015): starting
06:17:36 (181456): wrapper: running run_atlas (--nthreads 3)
[2026-02-26 06:17:36] Arguments: --nthreads 3
[2026-02-26 06:17:36] Threads: 3
[2026-02-26 06:17:36] Checking for CVMFS
[2026-02-26 06:17:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-26 06:17:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-26 06:17:37] Running cvmfs_config stat atlas.cern.ch
[2026-02-26 06:17:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-26 06:17:37] 2.9.2.0 56485 859 69604 156644 3 49 18667687 36864000 0 130560 0 349826 99.978 38333 8168 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-26 06:17:37] CVMFS is ok
[2026-02-26 06:17:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-26 06:17:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-26 06:17:37] Further information can be found at the LHC@home message board.
[2026-02-26 06:17:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-26 06:17:37] Checking for apptainer binary...
[2026-02-26 06:17:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-26 06:17:37] Running /usr/bin/apptainer --version
[2026-02-26 06:17:37] apptainer version 1.4.1-1.1
[2026-02-26 06:17:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-26 06:17:37] thA385
[2026-02-26 06:17:37] apptainer works
[2026-02-26 06:17:37] Set ATHENA_PROC_NUMBER=3
[2026-02-26 06:17:37] Set ATHENA_CORE_NUMBER=3
[2026-02-26 06:17:37] Starting ATLAS job with PandaID=7030328168
[2026-02-26 06:17:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-26 07:52:00]  *** The last 200 lines of the pilot log: ***
[2026-02-26 07:52:00] 2026-02-26 06:51:28,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,780 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,780 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-26 07:52:00] 2026-02-26 06:51:28,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,780 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-26 07:52:00] 2026-02-26 06:51:28,780 | INFO     | job 7030328168 has completed (purged errors)
[2026-02-26 07:52:00] 2026-02-26 06:51:28,780 | INFO     | overall cleanup function is called
[2026-02-26 07:52:00] 2026-02-26 06:51:29,786 | INFO     | --- collectZombieJob: --- 10, [189919]
[2026-02-26 07:52:00] 2026-02-26 06:51:29,786 | INFO     | zombie collector waiting for pid 189919
[2026-02-26 07:52:00] 2026-02-26 06:51:29,787 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-26 07:52:00] 2026-02-26 06:51:29,787 | INFO     | collected zombie processes
[2026-02-26 07:52:00] 2026-02-26 06:51:29,787 | INFO     | will attempt to kill all subprocesses of pid=189919
[2026-02-26 07:52:00] 2026-02-26 06:51:29,828 | INFO     | process IDs to be killed: [189919] (in reverse order)
[2026-02-26 07:52:00] 2026-02-26 06:51:29,853 | WARNING  | found no corresponding commands to process id(s)
[2026-02-26 07:52:00] 2026-02-26 06:51:29,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-26 07:52:00] 2026-02-26 06:51:29,855 | INFO     | did not find any defunct processes belonging to 189919
[2026-02-26 07:52:00] 2026-02-26 06:51:29,856 | INFO     | did not find any defunct processes belonging to 189919
[2026-02-26 07:52:00] 2026-02-26 06:51:29,856 | INFO     | ready for new job
[2026-02-26 07:52:00] 2026-02-26 06:51:29,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-26 07:52:00] 2026-02-26 06:51:29,857 | INFO     | **************************************
[2026-02-26 07:52:00] 2026-02-26 06:51:29,857 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-26 07:52:00] 2026-02-26 06:51:29,857 | INFO     | **************************************
[2026-02-26 07:52:00] 2026-02-26 06:51:29,857 | INFO     | 
[2026-02-26 07:52:00] 2026-02-26 06:51:29,857 | INFO     | architecture information:
[2026-02-26 07:52:00] 2026-02-26 06:51:29,857 | INFO     | executing command: cat /etc/os-release
[2026-02-26 07:52:00] 2026-02-26 06:51:29,866 | INFO     | cat /etc/os-release:
[2026-02-26 07:52:00] NAME="CentOS Linux"
[2026-02-26 07:52:00] VERSION="7 (Core)"
[2026-02-26 07:52:00] ID="centos"
[2026-02-26 07:52:00] ID_LIKE="rhel fedora"
[2026-02-26 07:52:00] VERSION_ID="7"
[2026-02-26 07:52:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-26 07:52:00] ANSI_COLOR="0;31"
[2026-02-26 07:52:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-26 07:52:00] HOME_URL="https://www.centos.org/"
[2026-02-26 07:52:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-26 07:52:00] 
[2026-02-26 07:52:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-26 07:52:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-26 07:52:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-26 07:52:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-26 07:52:00] 
[2026-02-26 07:52:00] 2026-02-26 06:51:29,867 | INFO     | **************************************
[2026-02-26 07:52:00] 2026-02-26 06:51:30,369 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-26 07:52:00] 2026-02-26 06:51:30,381 | INFO     | sufficient remaining disk space (385914765312 B)
[2026-02-26 07:52:00] 2026-02-26 06:51:30,381 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-26 07:52:00] 2026-02-26 06:51:30,382 | INFO     | current server update state: UPDATING_FINAL
[2026-02-26 07:52:00] 2026-02-26 06:51:30,382 | INFO     | update_server=False
[2026-02-26 07:52:00] 2026-02-26 06:51:30,382 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-26 07:52:00] 2026-02-26 06:51:30,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-26 07:52:00] 2026-02-26 06:51:30,421 | INFO     | all job control threads have been joined
[2026-02-26 07:52:00] 2026-02-26 06:51:30,654 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-26 07:52:00] 2026-02-26 06:51:30,654 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-26 07:52:00] 2026-02-26 06:51:30,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-26 07:52:00] 2026-02-26 06:51:30,654 | INFO     | will abort loop
[2026-02-26 07:52:00] 2026-02-26 06:51:31,156 | INFO     | all data control threads have been joined
[2026-02-26 07:52:00] 2026-02-26 06:51:31,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-26 07:52:00] 2026-02-26 06:51:31,387 | INFO     | [job] queue monitor thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:31,388 | INFO     | [job] retrieve thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:31,426 | INFO     | [job] control thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:31,439 | INFO     | all payload control threads have been joined
[2026-02-26 07:52:00] 2026-02-26 06:51:31,479 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:31,659 | INFO     | [job] job monitor thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:31,744 | INFO     | [payload] validate_post thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:31,833 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-26 07:52:00] 2026-02-26 06:51:32,162 | INFO     | [data] control thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:32,242 | INFO     | [job] create_data_payload thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:32,385 | INFO     | [data] copytool_in thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:32,401 | INFO     | [job] validate thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:32,440 | INFO     | [payload] control thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:32,641 | INFO     | [payload] validate_pre thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:32,699 | INFO     | [payload] failed_post thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:32,812 | INFO     | [payload] execute_payloads thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:33,315 | INFO     | [data] copytool_out thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:35,840 | INFO     | [data] queue_monitor thread has finished
[2026-02-26 07:52:00] 2026-02-26 06:51:54,482 | INFO     | [monitor] cgroup control has ended
[2026-02-26 07:52:00] 2026-02-26 06:51:55,651 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513915705152)>', '<ExcThread(monitor, started 140513202136832)>']
[2026-02-26 07:52:00] 2026-02-26 06:52:00,499 | INFO     | PID=185498 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-26 07:52:00] 2026-02-26 06:52:00,499 | INFO     | found 0 job(s) in 20 queues
[2026-02-26 07:52:00] 2026-02-26 06:52:00,499 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-26 07:52:00] 2026-02-26 06:52:00,499 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-26 07:52:00] 2026-02-26 06:52:00,499 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-26 07:52:00] 2026-02-26 06:52:00,499 | INFO     | [monitor] control thread has ended
[2026-02-26 07:52:00] 2026-02-26 06:52:00,676 | INFO     | all workflow threads have been joined
[2026-02-26 07:52:00] 2026-02-26 06:52:00,677 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-26 07:52:00] 2026-02-26 06:52:00,677 | INFO     | traces error code: 0
[2026-02-26 07:52:00] 2026-02-26 06:52:00,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-26 07:52:00] 2026-02-26 06:52:00,724 [wrapper] ==== pilot stdout END ====
[2026-02-26 07:52:00] 2026-02-26 06:52:00,726 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-26 07:52:00] 2026-02-26 06:52:00,729 [wrapper] pilotpid: 185498
[2026-02-26 07:52:00] 2026-02-26 06:52:00,731 [wrapper] Pilot exit status: 0
[2026-02-26 07:52:00] 2026-02-26 06:52:00,739 [wrapper] pandaids: 7030328168
[2026-02-26 07:52:00] 2026-02-26 06:52:00,756 [wrapper] cleanup supervisor_pilot  195476 185499
[2026-02-26 07:52:00] 2026-02-26 06:52:00,759 [wrapper] Test setup, not cleaning
[2026-02-26 07:52:00] 2026-02-26 06:52:00,761 [wrapper] apfmon messages muted
[2026-02-26 07:52:00] 2026-02-26 06:52:00,764 [wrapper] ==== wrapper stdout END ====
[2026-02-26 07:52:00] 2026-02-26 06:52:00,767 [wrapper] ==== wrapper stderr END ====
[2026-02-26 07:52:00]  *** Error codes and diagnostics ***
[2026-02-26 07:52:00]     "exeErrorCode": 0,
[2026-02-26 07:52:00]     "exeErrorDiag": "",
[2026-02-26 07:52:00]     "pilotErrorCode": 0,
[2026-02-26 07:52:00]     "pilotErrorDiag": "",
[2026-02-26 07:52:00]  *** Listing of results directory ***
[2026-02-26 07:52:00] total 509580
[2026-02-26 07:52:00] -rwx------ 1 boinc boinc     36322 Feb 25 17:53 runpilot2-wrapper.sh
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc      5111 Feb 25 17:53 queuedata.json
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc    584627 Feb 25 17:55 pilot3.tar.gz
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc       100 Feb 26 06:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-26 07:52:00] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 06:17 run_atlas
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc       105 Feb 26 06:17 job.xml
[2026-02-26 07:52:00] -rw-r--r-- 2 boinc boinc 292631731 Feb 26 06:17 EVNT.48220197._000006.pool.root.1
[2026-02-26 07:52:00] -rw-r--r-- 2 boinc boinc    597965 Feb 26 06:17 input.tar.gz
[2026-02-26 07:52:00] -rw-r--r-- 2 boinc boinc     15845 Feb 26 06:17 start_atlas.sh
[2026-02-26 07:52:00] drwxrwx--x 2 boinc boinc      4096 Feb 26 06:17 shared
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc         0 Feb 26 06:17 boinc_setup_complete
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc      6445 Feb 26 06:17 init_data.xml
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc         0 Feb 26 06:17 boinc_lockfile
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc      2565 Feb 26 06:17 pandaJob.out
[2026-02-26 07:52:00] -rw------- 1 boinc boinc    997632 Feb 26 06:17 agis_schedconf.cvmfs.json
[2026-02-26 07:52:00] -rw------- 1 boinc boinc   1513015 Feb 26 06:17 agis_ddmendpoints.agis.ALL.json
[2026-02-26 07:52:00] -rw------- 1 boinc boinc       423 Feb 26 06:17 workernode_map.json
[2026-02-26 07:52:00] drwx------ 5 boinc boinc      4096 Feb 26 06:17 pilot3
[2026-02-26 07:52:00] -rw------- 1 boinc boinc 223097102 Feb 26 07:51 HITS.48838577._000135.pool.root.1
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc       529 Feb 26 07:51 boinc_task_state.xml
[2026-02-26 07:52:00] -rw------- 1 boinc boinc        95 Feb 26 07:51 pilot_heartbeat.json
[2026-02-26 07:52:00] -rw------- 1 boinc boinc      1019 Feb 26 07:51 memory_monitor_summary.json
[2026-02-26 07:52:00] -rw------- 1 boinc boinc    260209 Feb 26 07:51 log.48838577._000135.job.log.tgz.1
[2026-02-26 07:52:00] -rw------- 1 boinc boinc      6297 Feb 26 07:51 heartbeat.json
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc      8192 Feb 26 07:51 boinc_mmap_file
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc        27 Feb 26 07:51 wrapper_checkpoint.txt
[2026-02-26 07:52:00] -rw------- 1 boinc boinc      4933 Feb 26 07:52 pilotlog.txt
[2026-02-26 07:52:00] -rw------- 1 boinc boinc    817665 Feb 26 07:52 log.48838577._000135.job.log.1
[2026-02-26 07:52:00] -rw------- 1 boinc boinc       357 Feb 26 07:52 output.list
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc       620 Feb 26 07:52 runtime_log
[2026-02-26 07:52:00] -rw------- 1 boinc boinc   1095680 Feb 26 07:52 result.tar.gz
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc      8896 Feb 26 07:52 runtime_log.err
[2026-02-26 07:52:00] -rw------- 1 boinc boinc       657 Feb 26 07:52 4d1LDmmJXF9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm5w0KDmHCmWQm.diag
[2026-02-26 07:52:00] -rw-r--r-- 1 boinc boinc     12663 Feb 26 07:52 stderr.txt
[2026-02-26 07:52:00] HITS file was successfully produced:
[2026-02-26 07:52:00] -rw------- 1 boinc boinc 223097102 Feb 26 07:51 shared/HITS.pool.root.1
[2026-02-26 07:52:00]  *** Contents of shared directory: ***
[2026-02-26 07:52:00] total 505328
[2026-02-26 07:52:00] -rw-r--r-- 2 boinc boinc 292631731 Feb 26 06:17 ATLAS.root_0
[2026-02-26 07:52:00] -rw-r--r-- 2 boinc boinc    597965 Feb 26 06:17 input.tar.gz
[2026-02-26 07:52:00] -rw-r--r-- 2 boinc boinc     15845 Feb 26 06:17 start_atlas.sh
[2026-02-26 07:52:00] -rw------- 1 boinc boinc 223097102 Feb 26 07:51 HITS.pool.root.1
[2026-02-26 07:52:00] -rw------- 1 boinc boinc   1095680 Feb 26 07:52 result.tar.gz
07:52:02 (181456): run_atlas exited; CPU time 16167.127090
07:52:02 (181456): called boinc_finish(0)

</stderr_txt>
]]>

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