Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:20:53 (152657): wrapper (7.7.26015): starting
09:20:53 (152657): wrapper: running run_atlas (--nthreads 3)
[2026-02-26 09:20:53] Arguments: --nthreads 3
[2026-02-26 09:20:53] Threads: 3
[2026-02-26 09:20:53] Checking for CVMFS
[2026-02-26 09:20:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-26 09:20:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-26 09:20:54] Running cvmfs_config stat atlas.cern.ch
[2026-02-26 09:21:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-26 09:21:15] 2.9.2.0 39710 869 59116 156648 0 49 25945746 36864001 0 130560 0 322737 99.972 40000 11235 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-26 09:21:15] CVMFS is ok
[2026-02-26 09:21:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-26 09:21:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-26 09:21:15] Further information can be found at the LHC@home message board.
[2026-02-26 09:21:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-26 09:21:15] Checking for apptainer binary...
[2026-02-26 09:21:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-26 09:21:15] Running /usr/bin/apptainer --version
[2026-02-26 09:21:15] apptainer version 1.4.1-1.1
[2026-02-26 09:21:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-26 09:21:15] cosA133a
[2026-02-26 09:21:15] apptainer works
[2026-02-26 09:21:15] Set ATHENA_PROC_NUMBER=3
[2026-02-26 09:21:15] Set ATHENA_CORE_NUMBER=3
[2026-02-26 09:21:15] Starting ATLAS job with PandaID=7030429280
[2026-02-26 09:21:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-26 11:05:47]  *** The last 200 lines of the pilot log: ***
[2026-02-26 11:05:47] 2026-02-26 10:05:12,608 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-26 11:05:47] 2026-02-26 10:05:12,609 | INFO     | job 7030429280 has completed (purged errors)
[2026-02-26 11:05:47] 2026-02-26 10:05:12,609 | INFO     | overall cleanup function is called
[2026-02-26 11:05:47] 2026-02-26 10:05:13,615 | INFO     | --- collectZombieJob: --- 10, [161148]
[2026-02-26 11:05:47] 2026-02-26 10:05:13,615 | INFO     | zombie collector waiting for pid 161148
[2026-02-26 11:05:47] 2026-02-26 10:05:13,615 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-26 11:05:47] 2026-02-26 10:05:13,615 | INFO     | collected zombie processes
[2026-02-26 11:05:47] 2026-02-26 10:05:13,615 | INFO     | will attempt to kill all subprocesses of pid=161148
[2026-02-26 11:05:47] 2026-02-26 10:05:13,648 | INFO     | process IDs to be killed: [161148] (in reverse order)
[2026-02-26 11:05:47] 2026-02-26 10:05:13,674 | WARNING  | found no corresponding commands to process id(s)
[2026-02-26 11:05:47] 2026-02-26 10:05:13,675 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-26 11:05:47] 2026-02-26 10:05:13,676 | INFO     | did not find any defunct processes belonging to 161148
[2026-02-26 11:05:47] 2026-02-26 10:05:13,677 | INFO     | did not find any defunct processes belonging to 161148
[2026-02-26 11:05:47] 2026-02-26 10:05:13,677 | INFO     | ready for new job
[2026-02-26 11:05:47] 2026-02-26 10:05:13,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-26 11:05:47] 2026-02-26 10:05:13,678 | INFO     | **************************************
[2026-02-26 11:05:47] 2026-02-26 10:05:13,678 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-26 11:05:47] 2026-02-26 10:05:13,678 | INFO     | **************************************
[2026-02-26 11:05:47] 2026-02-26 10:05:13,678 | INFO     | 
[2026-02-26 11:05:47] 2026-02-26 10:05:13,678 | INFO     | architecture information:
[2026-02-26 11:05:47] 2026-02-26 10:05:13,678 | INFO     | executing command: cat /etc/os-release
[2026-02-26 11:05:47] 2026-02-26 10:05:13,689 | INFO     | cat /etc/os-release:
[2026-02-26 11:05:47] NAME="CentOS Linux"
[2026-02-26 11:05:47] VERSION="7 (Core)"
[2026-02-26 11:05:47] ID="centos"
[2026-02-26 11:05:47] ID_LIKE="rhel fedora"
[2026-02-26 11:05:47] VERSION_ID="7"
[2026-02-26 11:05:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-26 11:05:47] ANSI_COLOR="0;31"
[2026-02-26 11:05:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-26 11:05:47] HOME_URL="https://www.centos.org/"
[2026-02-26 11:05:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-26 11:05:47] 
[2026-02-26 11:05:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-26 11:05:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-26 11:05:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-26 11:05:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-26 11:05:47] 
[2026-02-26 11:05:47] 2026-02-26 10:05:13,690 | INFO     | **************************************
[2026-02-26 11:05:47] 2026-02-26 10:05:13,986 | WARNING  | process 161148 can no longer be monitored (due to stat problems) - aborting
[2026-02-26 11:05:47] 2026-02-26 10:05:14,012 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-26 11:05:47] 2026-02-26 10:05:14,012 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-26 11:05:47] 2026-02-26 10:05:14,012 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-26 11:05:47] 2026-02-26 10:05:14,013 | WARNING  | maxPSS not found in memory monitor output
[2026-02-26 11:05:47] 2026-02-26 10:05:14,013 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7030429280/payload.stdout) since it has not been created yet
[2026-02-26 11:05:47] 2026-02-26 10:05:14,013 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-26 11:05:47] 2026-02-26 10:05:14,024 | INFO     | sufficient remaining disk space (333546782720 B)
[2026-02-26 11:05:47] 2026-02-26 10:05:14,024 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-26 11:05:47] 2026-02-26 10:05:14,024 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7030429280/HITS.48838416._003538.pool.root.1 since it does not exist
[2026-02-26 11:05:47] 2026-02-26 10:05:14,056 | INFO     | number of running child processes to parent process 161148: 1
[2026-02-26 11:05:47] 2026-02-26 10:05:14,057 | INFO     | maximum number of monitored processes: 6
[2026-02-26 11:05:47] 2026-02-26 10:05:14,057 | INFO     | aborting job monitoring since job object (job id=7030429280) has expired
[2026-02-26 11:05:47] 2026-02-26 10:05:14,193 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-26 11:05:47] 2026-02-26 10:05:14,206 | INFO     | sufficient remaining disk space (333546782720 B)
[2026-02-26 11:05:47] 2026-02-26 10:05:14,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-26 11:05:47] 2026-02-26 10:05:14,207 | INFO     | current server update state: UPDATING_FINAL
[2026-02-26 11:05:47] 2026-02-26 10:05:14,207 | INFO     | update_server=False
[2026-02-26 11:05:47] 2026-02-26 10:05:14,207 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-26 11:05:47] 2026-02-26 10:05:14,207 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-26 11:05:47] 2026-02-26 10:05:14,207 | INFO     | will abort loop
[2026-02-26 11:05:47] 2026-02-26 10:05:14,207 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-26 11:05:47] 2026-02-26 10:05:14,207 | INFO     | found 0 job(s) in 20 queues
[2026-02-26 11:05:47] 2026-02-26 10:05:14,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-26 11:05:47] 2026-02-26 10:05:14,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-26 11:05:47] 2026-02-26 10:05:14,351 | INFO     | all payload control threads have been joined
[2026-02-26 11:05:47] 2026-02-26 10:05:14,512 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-26 11:05:47] 2026-02-26 10:05:15,094 | INFO     | all data control threads have been joined
[2026-02-26 11:05:47] 2026-02-26 10:05:15,213 | INFO     | [job] retrieve thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:15,214 | INFO     | [job] job monitor thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:15,345 | INFO     | [job] create_data_payload thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:15,356 | INFO     | [payload] control thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:15,407 | INFO     | [data] copytool_in thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:15,556 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-26 11:05:47] 2026-02-26 10:05:15,746 | INFO     | all job control threads have been joined
[2026-02-26 11:05:47] 2026-02-26 10:05:15,792 | INFO     | [payload] execute_payloads thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:15,855 | INFO     | [payload] failed_post thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:16,100 | INFO     | [data] control thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:16,338 | INFO     | [payload] validate_post thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:16,405 | INFO     | [payload] validate_pre thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:16,437 | INFO     | [job] validate thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:16,517 | INFO     | [data] copytool_out thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:16,752 | INFO     | [job] control thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:17,149 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-26 11:05:47] 2026-02-26 10:05:18,155 | INFO     | [job] queue monitor thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:19,563 | INFO     | [data] queue_monitor thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:24,742 | INFO     | job.realtimelogging is not enabled
[2026-02-26 11:05:47] 2026-02-26 10:05:25,748 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-26 11:05:47] 2026-02-26 10:05:41,256 | INFO     | [monitor] cgroup control has ended
[2026-02-26 11:05:47] 2026-02-26 10:05:42,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139766435891008)>', '<ExcThread(monitor, started 139765802325760)>']
[2026-02-26 11:05:47] 2026-02-26 10:05:42,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-26 11:05:47] 2026-02-26 10:05:42,351 | INFO     | [monitor] control thread has ended
[2026-02-26 11:05:47] 2026-02-26 10:05:47,163 | INFO     | all workflow threads have been joined
[2026-02-26 11:05:47] 2026-02-26 10:05:47,164 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-26 11:05:47] 2026-02-26 10:05:47,164 | INFO     | traces error code: 0
[2026-02-26 11:05:47] 2026-02-26 10:05:47,165 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-26 11:05:47] 2026-02-26 10:05:47,210 [wrapper] ==== pilot stdout END ====
[2026-02-26 11:05:47] 2026-02-26 10:05:47,213 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-26 11:05:47] 2026-02-26 10:05:47,216 [wrapper] pilotpid: 156718
[2026-02-26 11:05:47] 2026-02-26 10:05:47,218 [wrapper] Pilot exit status: 0
[2026-02-26 11:05:47] 2026-02-26 10:05:47,226 [wrapper] pandaids: 7030429280
[2026-02-26 11:05:47] 2026-02-26 10:05:47,242 [wrapper] cleanup supervisor_pilot  166390 156719
[2026-02-26 11:05:47] 2026-02-26 10:05:47,245 [wrapper] Test setup, not cleaning
[2026-02-26 11:05:47] 2026-02-26 10:05:47,247 [wrapper] apfmon messages muted
[2026-02-26 11:05:47] 2026-02-26 10:05:47,250 [wrapper] ==== wrapper stdout END ====
[2026-02-26 11:05:47] 2026-02-26 10:05:47,252 [wrapper] ==== wrapper stderr END ====
[2026-02-26 11:05:47]  *** Error codes and diagnostics ***
[2026-02-26 11:05:47]     "exeErrorCode": 0,
[2026-02-26 11:05:47]     "exeErrorDiag": "",
[2026-02-26 11:05:47]     "pilotErrorCode": 0,
[2026-02-26 11:05:47]     "pilotErrorDiag": "",
[2026-02-26 11:05:47]  *** Listing of results directory ***
[2026-02-26 11:05:47] total 507608
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc    584627 Feb 26 00:19 pilot3.tar.gz
[2026-02-26 11:05:47] -rwx------ 1 boinc boinc     36322 Feb 26 00:20 runpilot2-wrapper.sh
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc      5111 Feb 26 00:21 queuedata.json
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc       100 Feb 26 09:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-26 11:05:47] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 09:20 run_atlas
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc       105 Feb 26 09:20 job.xml
[2026-02-26 11:05:47] -rw-r--r-- 2 boinc boinc 290315206 Feb 26 09:20 EVNT.48220085._000147.pool.root.1
[2026-02-26 11:05:47] -rw-r--r-- 2 boinc boinc    597961 Feb 26 09:20 input.tar.gz
[2026-02-26 11:05:47] -rw-r--r-- 2 boinc boinc     15845 Feb 26 09:20 start_atlas.sh
[2026-02-26 11:05:47] drwxrwx--x 2 boinc boinc      4096 Feb 26 09:20 shared
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc         0 Feb 26 09:20 boinc_setup_complete
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc      6198 Feb 26 09:20 init_data.xml
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc         0 Feb 26 09:20 boinc_lockfile
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc      2566 Feb 26 09:21 pandaJob.out
[2026-02-26 11:05:47] -rw------- 1 boinc boinc    997714 Feb 26 09:21 agis_schedconf.cvmfs.json
[2026-02-26 11:05:47] -rw------- 1 boinc boinc   1513015 Feb 26 09:21 agis_ddmendpoints.agis.ALL.json
[2026-02-26 11:05:47] -rw------- 1 boinc boinc       428 Feb 26 09:21 workernode_map.json
[2026-02-26 11:05:47] drwx------ 5 boinc boinc      4096 Feb 26 09:21 pilot3
[2026-02-26 11:05:47] -rw------- 1 boinc boinc 223237502 Feb 26 11:04 HITS.48838416._003538.pool.root.1
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc       529 Feb 26 11:04 boinc_task_state.xml
[2026-02-26 11:05:47] -rw------- 1 boinc boinc        95 Feb 26 11:04 pilot_heartbeat.json
[2026-02-26 11:05:47] -rw------- 1 boinc boinc      1014 Feb 26 11:05 memory_monitor_summary.json
[2026-02-26 11:05:47] -rw------- 1 boinc boinc    255463 Feb 26 11:05 log.48838416._003538.job.log.tgz.1
[2026-02-26 11:05:47] -rw------- 1 boinc boinc      6311 Feb 26 11:05 heartbeat.json
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc        27 Feb 26 11:05 wrapper_checkpoint.txt
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc      8192 Feb 26 11:05 boinc_mmap_file
[2026-02-26 11:05:47] -rw------- 1 boinc boinc      6123 Feb 26 11:05 pilotlog.txt
[2026-02-26 11:05:47] -rw------- 1 boinc boinc    900012 Feb 26 11:05 log.48838416._003538.job.log.1
[2026-02-26 11:05:47] -rw------- 1 boinc boinc       357 Feb 26 11:05 output.list
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc       620 Feb 26 11:05 runtime_log
[2026-02-26 11:05:47] -rw------- 1 boinc boinc   1177600 Feb 26 11:05 result.tar.gz
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc      8906 Feb 26 11:05 runtime_log.err
[2026-02-26 11:05:47] -rw------- 1 boinc boinc       659 Feb 26 11:05 ERIKDmnMdF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmLezKDmfWI5hm.diag
[2026-02-26 11:05:47] -rw-r--r-- 1 boinc boinc     12693 Feb 26 11:05 stderr.txt
[2026-02-26 11:05:47] HITS file was successfully produced:
[2026-02-26 11:05:47] -rw------- 1 boinc boinc 223237502 Feb 26 11:04 shared/HITS.pool.root.1
[2026-02-26 11:05:47]  *** Contents of shared directory: ***
[2026-02-26 11:05:47] total 503280
[2026-02-26 11:05:47] -rw-r--r-- 2 boinc boinc 290315206 Feb 26 09:20 ATLAS.root_0
[2026-02-26 11:05:47] -rw-r--r-- 2 boinc boinc    597961 Feb 26 09:20 input.tar.gz
[2026-02-26 11:05:47] -rw-r--r-- 2 boinc boinc     15845 Feb 26 09:20 start_atlas.sh
[2026-02-26 11:05:47] -rw------- 1 boinc boinc 223237502 Feb 26 11:04 HITS.pool.root.1
[2026-02-26 11:05:47] -rw------- 1 boinc boinc   1177600 Feb 26 11:05 result.tar.gz
11:05:49 (152657): run_atlas exited; CPU time 17992.483957
11:05:49 (152657): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN