Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
07:43:35 (196015): wrapper (7.7.26015): starting
07:43:35 (196015): wrapper: running run_atlas (--nthreads 12)
[2026-02-26 07:43:35] Arguments: --nthreads 12
[2026-02-26 07:43:35] Threads: 12
[2026-02-26 07:43:35] Checking for CVMFS
[2026-02-26 07:43:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-26 07:43:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-26 07:43:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-26 07:43:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-26 07:43:40] 2.13.3.0 5451 532 48268 156645 1 50 3625163 4096001 0 130560 0 278960 99.978 22126 245 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-26 07:43:40] CVMFS is ok
[2026-02-26 07:43:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-26 07:43:40] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-26 07:43:40] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-26 07:43:40] Further information can be found at the LHC@home message board.
[2026-02-26 07:43:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-26 07:43:40] Checking for apptainer binary...
[2026-02-26 07:43:40] apptainer is not installed, using version from CVMFS
[2026-02-26 07:43:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-26 07:43:41] ws24
[2026-02-26 07:43:41] apptainer works
[2026-02-26 07:43:41] Set ATHENA_PROC_NUMBER=12
[2026-02-26 07:43:41] Set ATHENA_CORE_NUMBER=12
[2026-02-26 07:43:41] Starting ATLAS job with PandaID=7030293330
[2026-02-26 07:43:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-26 08:53:39]  *** The last 200 lines of the pilot log: ***
[2026-02-26 08:53:39]  guid=00266be6-603f-4d73-a44a-3c8c70bde25b
[2026-02-26 08:53:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-26 08:53:39]  is_altstaged=None
[2026-02-26 08:53:39]  is_tar=False
[2026-02-26 08:53:39]  lfn=log.48838610._000135.job.log.tgz.1
[2026-02-26 08:53:39]  mtime=0
[2026-02-26 08:53:39]  protocol_id=None
[2026-02-26 08:53:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-26 08:53:39]  replicas=None
[2026-02-26 08:53:39]  scope=mc23_13p6TeV
[2026-02-26 08:53:39]  status=None
[2026-02-26 08:53:39]  status_code=0
[2026-02-26 08:53:39]  storage_token=
[2026-02-26 08:53:39]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-7030293330/log.48838610._000135.job.log.tgz.1
[2026-02-26 08:53:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/25/log.48838610._000135.job.log.tgz.1
[2026-02-26 08:53:39]  workdir=None
[2026-02-26 08:53:39] ]
[2026-02-26 08:53:39] 2026-02-26 07:53:03,868 | INFO     | transferring file log.48838610._000135.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-7030293330/log.48838610._000135.job.log.tgz.1 to /var/lib/boinc
[2026-02-26 08:53:39] 2026-02-26 07:53:03,868 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-7030293330/log.48838610._000135.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.488386
[2026-02-26 08:53:39] 2026-02-26 07:53:03,888 | INFO     | adding to output.list: log.48838610._000135.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/25/log.48838610._000135.job.log.tg
[2026-02-26 08:53:39] 2026-02-26 07:53:03,888 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-26 08:53:39] 2026-02-26 07:53:03,888 | INFO     | summary of transferred files:
[2026-02-26 08:53:39] 2026-02-26 07:53:03,888 | INFO     |  -- lfn=log.48838610._000135.job.log.tgz.1, status_code=0, status=transferred
[2026-02-26 08:53:39] 2026-02-26 07:53:03,889 | INFO     | stage-out finished correctly
[2026-02-26 08:53:39] 2026-02-26 07:53:05,671 | INFO     | time since job start (4122s) is within the limit (349056.0s)
[2026-02-26 08:53:39] 2026-02-26 07:53:05,775 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-26 08:53:39] 2026-02-26 07:53:06,800 | INFO     | PID=200125 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-26 08:53:39] 2026-02-26 07:53:07,383 | INFO     | job 7030293330 has state=finished
[2026-02-26 08:53:39] 2026-02-26 07:53:07,383 | INFO     | preparing for final server update for job 7030293330 in state='finished'
[2026-02-26 08:53:39] 2026-02-26 07:53:07,383 | INFO     | reading metadata from: /var/lib/boinc-client/slots/1/PanDA_Pilot-7030293330/jobReport.json
[2026-02-26 08:53:39] 2026-02-26 07:53:07,385 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/1/workernode_map.json
[2026-02-26 08:53:39] 2026-02-26 07:53:07,385 | INFO     | this job has now completed (state=finished)
[2026-02-26 08:53:39] 2026-02-26 07:53:07,385 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-26 08:53:39] 2026-02-26 07:53:07,385 | INFO     | log transfer has been attempted: DONE
[2026-02-26 08:53:39] 2026-02-26 07:53:07,386 | INFO     | job 7030293330 has finished - writing final server update
[2026-02-26 08:53:39] 2026-02-26 07:53:07,386 | INFO     | total number of processed events: 400 (read)
[2026-02-26 08:53:39] 2026-02-26 07:53:07,389 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-7030293330/memory_monitor_summary.json (trf name=prmon)
[2026-02-26 08:53:39] 2026-02-26 07:53:07,389 | INFO     | extracted standard info from prmon json
[2026-02-26 08:53:39] 2026-02-26 07:53:07,389 | INFO     | extracted standard memory fields from prmon json
[2026-02-26 08:53:39] 2026-02-26 07:53:07,389 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-26 08:53:39] 2026-02-26 07:53:07,389 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-26 08:53:39] 2026-02-26 07:53:07,389 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-26 08:53:39] 2026-02-26 07:53:07,391 | INFO     | fitting pss+swap vs Time
[2026-02-26 08:53:39] 2026-02-26 07:53:07,391 | INFO     | sum of square deviations: 70364110.0
[2026-02-26 08:53:39] 2026-02-26 07:53:07,391 | INFO     | sum of deviations: -7767432498.999998
[2026-02-26 08:53:39] 2026-02-26 07:53:07,391 | INFO     | mean x: 1772090417.0
[2026-02-26 08:53:39] 2026-02-26 07:53:07,391 | INFO     | mean y: 2849748.180327869
[2026-02-26 08:53:39] 2026-02-26 07:53:07,391 | INFO     | intersect: 195622359412.58536
[2026-02-26 08:53:39] 2026-02-26 07:53:07,391 | INFO     | chi2: 0.09795373414224096
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | current memory leak: -110.39 B/s (using 61 data points, chi2=0.10)
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | could have reported an average CPU frequency of 2699 MHz (6 samples)
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | ..............................
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | . Timing measurements:
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | . get job = 0 s
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | . initial setup = 11 s
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | . payload setup = 4 s
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | . stage-in = 0 s
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | . payload execution = 4100 s
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | . stage-out = 0 s
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | . log creation = 0 s
[2026-02-26 08:53:39] 2026-02-26 07:53:07,392 | INFO     | ..............................
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | 
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | job summary report
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | --------------------------------------------------
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | PanDA job id: 7030293330
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | task id: 48838610
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | errors: (none)
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | pilot state: finished 
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | transexitcode: 0
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | exeerrorcode: 0
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | exeerrordiag: 
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | exitcode: 0
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | exitmsg: OK
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | cpuconsumptiontime: 45019 s
[2026-02-26 08:53:39] 2026-02-26 07:53:07,466 | INFO     | nevents: 400
[2026-02-26 08:53:39] 2026-02-26 07:53:07,467 | INFO     | neventsw: 0
[2026-02-26 08:53:39] 2026-02-26 07:53:07,467 | INFO     | pid: 204620
[2026-02-26 08:53:39] 2026-02-26 07:53:07,467 | INFO     | pgrp: 204620
[2026-02-26 08:53:39] 2026-02-26 07:53:07,467 | INFO     | corecount: 12
[2026-02-26 08:53:39] 2026-02-26 07:53:07,467 | INFO     | event service: False
[2026-02-26 08:53:39] 2026-02-26 07:53:07,467 | INFO     | sizes: {0: 2282292, 11: 2282292, 4108: 2308237, 4109: 2317249, 4111: 2317305, 4113: 2317499}
[2026-02-26 08:53:39] 2026-02-26 07:53:07,467 | INFO     | --------------------------------------------------
[2026-02-26 08:53:39] 2026-02-26 07:53:07,467 | INFO     | 
[2026-02-26 08:53:39] 2026-02-26 07:53:07,467 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-02-26 08:53:39] 2026-02-26 07:53:07,489 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,490 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,491 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,491 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-26 08:53:39] 2026-02-26 07:53:07,491 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,491 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-26 08:53:39] 2026-02-26 07:53:07,491 | INFO     | job 7030293330 has completed (purged errors)
[2026-02-26 08:53:39] 2026-02-26 07:53:07,491 | INFO     | overall cleanup function is called
[2026-02-26 08:53:39] 2026-02-26 07:53:08,499 | INFO     | --- collectZombieJob: --- 10, [204620]
[2026-02-26 08:53:39] 2026-02-26 07:53:08,500 | INFO     | zombie collector waiting for pid 204620
[2026-02-26 08:53:39] 2026-02-26 07:53:08,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-26 08:53:39] 2026-02-26 07:53:08,500 | INFO     | collected zombie processes
[2026-02-26 08:53:39] 2026-02-26 07:53:08,500 | INFO     | will attempt to kill all subprocesses of pid=204620
[2026-02-26 08:53:39] 2026-02-26 07:53:08,634 | INFO     | process IDs to be killed: [204620] (in reverse order)
[2026-02-26 08:53:39] 2026-02-26 07:53:08,696 | WARNING  | found no corresponding commands to process id(s)
[2026-02-26 08:53:39] 2026-02-26 07:53:08,696 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-26 08:53:39] 2026-02-26 07:53:08,699 | INFO     | did not find any defunct processes belonging to 204620
[2026-02-26 08:53:39] 2026-02-26 07:53:08,702 | INFO     | did not find any defunct processes belonging to 204620
[2026-02-26 08:53:39] 2026-02-26 07:53:08,702 | INFO     | ready for new job
[2026-02-26 08:53:39] 2026-02-26 07:53:08,702 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-26 08:53:39] 2026-02-26 07:53:08,703 | INFO     | **************************************
[2026-02-26 08:53:39] 2026-02-26 07:53:08,703 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-26 08:53:39] 2026-02-26 07:53:08,703 | INFO     | **************************************
[2026-02-26 08:53:39] 2026-02-26 07:53:08,703 | INFO     | 
[2026-02-26 08:53:39] 2026-02-26 07:53:08,704 | INFO     | architecture information:
[2026-02-26 08:53:39] 2026-02-26 07:53:08,704 | INFO     | executing command: cat /etc/os-release
[2026-02-26 08:53:39] 2026-02-26 07:53:08,719 | INFO     | cat /etc/os-release:
[2026-02-26 08:53:39] NAME="CentOS Linux"
[2026-02-26 08:53:39] VERSION="7 (Core)"
[2026-02-26 08:53:39] ID="centos"
[2026-02-26 08:53:39] ID_LIKE="rhel fedora"
[2026-02-26 08:53:39] VERSION_ID="7"
[2026-02-26 08:53:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-26 08:53:39] ANSI_COLOR="0;31"
[2026-02-26 08:53:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-26 08:53:39] HOME_URL="https://www.centos.org/"
[2026-02-26 08:53:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-26 08:53:39] 
[2026-02-26 08:53:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-26 08:53:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-26 08:53:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-26 08:53:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-26 08:53:39] 
[2026-02-26 08:53:39] 2026-02-26 07:53:08,719 | INFO     | **************************************
[2026-02-26 08:53:39] 2026-02-26 07:53:09,126 | WARNING  | process 204620 can no longer be monitored (due to stat problems) - aborting
[2026-02-26 08:53:39] 2026-02-26 07:53:09,214 | INFO     | using path: /var/lib/boinc-client/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-26 08:53:39] 2026-02-26 07:53:09,221 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-02-26 08:53:39] 2026-02-26 07:53:09,244 | INFO     | sufficient remaining disk space (28093448192 B)
[2026-02-26 08:53:39] 2026-02-26 07:53:09,245 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-26 08:53:39] 2026-02-26 07:53:09,245 | INFO     | current server update state: UPDATING_FINAL
[2026-02-26 08:53:39] 2026-02-26 07:53:09,245 | INFO     | update_server=False
[2026-02-26 08:53:39] 2026-02-26 07:53:09,245 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-26 08:53:39] 2026-02-26 07:53:09,245 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-26 08:53:39] 2026-02-26 07:53:09,300 | INFO     | all data control threads have been joined
[2026-02-26 08:53:39] 2026-02-26 07:53:09,334 | INFO     | number of running child processes to parent process 204620: 1
[2026-02-26 08:53:39] 2026-02-26 07:53:09,335 | INFO     | maximum number of monitored processes: 6
[2026-02-26 08:53:39] 2026-02-26 07:53:09,335 | INFO     | aborting job monitoring since job object (job id=7030293330) has expired
[2026-02-26 08:53:39] 2026-02-26 07:53:09,335 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-26 08:53:39] 2026-02-26 07:53:09,335 | INFO     | will abort loop
[2026-02-26 08:53:39] 2026-02-26 07:53:09,457 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-26 08:53:39] 2026-02-26 07:53:09,800 | INFO     | all payload control threads have been joined
[2026-02-26 08:53:39] 2026-02-26 07:53:09,920 | INFO     | all job control threads have been joined
[2026-02-26 08:53:39] 2026-02-26 07:53:10,249 | INFO     | [job] queue monitor thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:10,250 | INFO     | [job] retrieve thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:10,305 | INFO     | [data] control thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:10,306 | INFO     | [data] copytool_in thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:10,340 | INFO     | [job] job monitor thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:10,565 | INFO     | [payload] failed_post thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:10,805 | INFO     | [payload] control thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:10,925 | INFO     | [job] control thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:11,053 | INFO     | [job] validate thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:11,113 | INFO     | [payload] execute_payloads thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:11,302 | INFO     | [job] create_data_payload thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:11,387 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:11,420 | INFO     | [payload] validate_pre thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:11,462 | INFO     | [data] copytool_out thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:11,680 | INFO     | [payload] validate_post thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:11,863 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-26 08:53:39] 2026-02-26 07:53:15,869 | INFO     | [data] queue_monitor thread has finished
[2026-02-26 08:53:39] 2026-02-26 07:53:29,219 | INFO     | [monitor] cgroup control has ended
[2026-02-26 08:53:39] 2026-02-26 07:53:30,018 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124459682531136)>', '<ExcThread(monitor, started 124459134469888)>']
[2026-02-26 08:53:39] 2026-02-26 07:53:35,043 | INFO     | all workflow threads have been joined
[2026-02-26 08:53:39] 2026-02-26 07:53:35,044 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-26 08:53:39] 2026-02-26 07:53:35,044 | INFO     | traces error code: 0
[2026-02-26 08:53:39] 2026-02-26 07:53:35,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-26 08:53:39] 2026-02-26 07:53:39,016 | INFO     | PID=200125 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-26 08:53:39] 2026-02-26 07:53:39,016 | INFO     | found 0 job(s) in 20 queues
[2026-02-26 08:53:39] 2026-02-26 07:53:39,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-26 08:53:39] 2026-02-26 07:53:39,016 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-26 08:53:39] 2026-02-26 07:53:39,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-26 08:53:39] 2026-02-26 07:53:39,016 | INFO     | [monitor] control thread has ended
[2026-02-26 08:53:39] 2026-02-26 07:53:39,103 [wrapper] ==== pilot stdout END ====
[2026-02-26 08:53:39] 2026-02-26 07:53:39,106 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-26 08:53:39] 2026-02-26 07:53:39,109 [wrapper] pilotpid: 200125
[2026-02-26 08:53:39] 2026-02-26 07:53:39,112 [wrapper] Pilot exit status: 0
[2026-02-26 08:53:39] 2026-02-26 07:53:39,120 [wrapper] pandaids: 7030293330
[2026-02-26 08:53:39] 2026-02-26 07:53:39,150 [wrapper] cleanup supervisor_pilot  210145 200126
[2026-02-26 08:53:39] 2026-02-26 07:53:39,152 [wrapper] Test setup, not cleaning
[2026-02-26 08:53:39] 2026-02-26 07:53:39,155 [wrapper] apfmon messages muted
[2026-02-26 08:53:39] 2026-02-26 07:53:39,159 [wrapper] ==== wrapper stdout END ====
[2026-02-26 08:53:39] 2026-02-26 07:53:39,161 [wrapper] ==== wrapper stderr END ====
[2026-02-26 08:53:39]  *** Error codes and diagnostics ***
[2026-02-26 08:53:39]     "exeErrorCode": 0,
[2026-02-26 08:53:39]     "exeErrorDiag": "",
[2026-02-26 08:53:39]     "pilotErrorCode": 0,
[2026-02-26 08:53:39]     "pilotErrorDiag": "",
[2026-02-26 08:53:39]  *** Listing of results directory ***
[2026-02-26 08:53:39] total 468932
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc    584627 Feb 25 16:36 pilot3.tar.gz
[2026-02-26 08:53:39] -rwx------ 1 boinc boinc     36322 Feb 25 16:39 runpilot2-wrapper.sh
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc      5111 Feb 25 16:41 queuedata.json
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc       100 Feb 26 07:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-26 08:53:39] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 07:43 run_atlas
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc       105 Feb 26 07:43 job.xml
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc      9523 Feb 26 07:43 init_data.xml
[2026-02-26 08:53:39] -rw-r--r-- 2 boinc boinc 272147476 Feb 26 07:43 EVNT.48343779._000006.pool.root.1
[2026-02-26 08:53:39] drwxrwx--x 2 boinc boinc      4096 Feb 26 07:43 shared
[2026-02-26 08:53:39] -rw-r--r-- 2 boinc boinc    597974 Feb 26 07:43 input.tar.gz
[2026-02-26 08:53:39] -rw-r--r-- 2 boinc boinc     15845 Feb 26 07:43 start_atlas.sh
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc         0 Feb 26 07:43 boinc_lockfile
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc      2577 Feb 26 07:43 pandaJob.out
[2026-02-26 08:53:39] -rw------- 1 boinc boinc    997640 Feb 26 07:44 agis_schedconf.cvmfs.json
[2026-02-26 08:53:39] -rw------- 1 boinc boinc   1513015 Feb 26 07:44 agis_ddmendpoints.agis.ALL.json
[2026-02-26 08:53:39] -rw------- 1 boinc boinc       414 Feb 26 07:44 workernode_map.json
[2026-02-26 08:53:39] drwx------ 5 boinc boinc      4096 Feb 26 07:44 pilot3
[2026-02-26 08:53:39] -rw------- 1 boinc boinc 202140038 Feb 26 08:52 HITS.48838610._000135.pool.root.1
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc       529 Feb 26 08:52 boinc_task_state.xml
[2026-02-26 08:53:39] -rw------- 1 boinc boinc      1020 Feb 26 08:52 memory_monitor_summary.json
[2026-02-26 08:53:39] -rw------- 1 boinc boinc    374705 Feb 26 08:53 log.48838610._000135.job.log.tgz.1
[2026-02-26 08:53:39] -rw------- 1 boinc boinc        95 Feb 26 08:53 pilot_heartbeat.json
[2026-02-26 08:53:39] -rw------- 1 boinc boinc      6276 Feb 26 08:53 heartbeat.json
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc      8192 Feb 26 08:53 boinc_mmap_file
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc        27 Feb 26 08:53 wrapper_checkpoint.txt
[2026-02-26 08:53:39] -rw------- 1 boinc boinc       746 Feb 26 08:53 pilotlog.txt
[2026-02-26 08:53:39] -rw------- 1 boinc boinc    609600 Feb 26 08:53 log.48838610._000135.job.log.1
[2026-02-26 08:53:39] -rw------- 1 boinc boinc       357 Feb 26 08:53 output.list
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc       620 Feb 26 08:53 runtime_log
[2026-02-26 08:53:39] -rw------- 1 boinc boinc   1003520 Feb 26 08:53 result.tar.gz
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc      8857 Feb 26 08:53 runtime_log.err
[2026-02-26 08:53:39] -rw------- 1 boinc boinc       637 Feb 26 08:53 H4EODmj9VF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmhvyKDmGy63wn.diag
[2026-02-26 08:53:39] -rw-r--r-- 1 boinc boinc     21623 Feb 26 08:53 stderr.txt
[2026-02-26 08:53:39] HITS file was successfully produced:
[2026-02-26 08:53:39] -rw------- 1 boinc boinc 202140038 Feb 26 08:52 shared/HITS.pool.root.1
[2026-02-26 08:53:39]  *** Contents of shared directory: ***
[2026-02-26 08:53:39] total 464764
[2026-02-26 08:53:39] -rw-r--r-- 2 boinc boinc 272147476 Feb 26 07:43 ATLAS.root_0
[2026-02-26 08:53:39] -rw-r--r-- 2 boinc boinc    597974 Feb 26 07:43 input.tar.gz
[2026-02-26 08:53:39] -rw-r--r-- 2 boinc boinc     15845 Feb 26 07:43 start_atlas.sh
[2026-02-26 08:53:39] -rw------- 1 boinc boinc 202140038 Feb 26 08:52 HITS.pool.root.1
[2026-02-26 08:53:39] -rw------- 1 boinc boinc   1003520 Feb 26 08:53 result.tar.gz
08:53:40 (196015): run_atlas exited; CPU time 45052.963268
08:53:40 (196015): called boinc_finish(0)

</stderr_txt>
]]>

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