Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:22:46 (157012): wrapper (7.7.26015): starting
00:22:46 (157012): wrapper: running run_atlas (--nthreads 4)
[2026-02-26 00:22:46] Arguments: --nthreads 4
[2026-02-26 00:22:46] Threads: 4
[2026-02-26 00:22:46] Checking for CVMFS
[2026-02-26 00:22:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-26 00:22:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-26 00:22:47] Running cvmfs_config stat atlas.cern.ch
[2026-02-26 00:22:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-26 00:22:47] 2.9.2.0 79673 429 69320 156634 3 50 27194322 36864000 0 130560 0 199896 99.974 27116 19865 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-26 00:22:47] CVMFS is ok
[2026-02-26 00:22:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-26 00:22:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-26 00:22:47] Further information can be found at the LHC@home message board.
[2026-02-26 00:22:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-26 00:22:47] Checking for apptainer binary...
[2026-02-26 00:22:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-26 00:22:47] Running /usr/bin/apptainer --version
[2026-02-26 00:22:47] apptainer version 1.4.1-1.1
[2026-02-26 00:22:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-26 00:22:47] thA309
[2026-02-26 00:22:47] apptainer works
[2026-02-26 00:22:47] Set ATHENA_PROC_NUMBER=4
[2026-02-26 00:22:47] Set ATHENA_CORE_NUMBER=4
[2026-02-26 00:22:47] Starting ATLAS job with PandaID=7030292286
[2026-02-26 00:22:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-26 01:45:16]  *** The last 200 lines of the pilot log: ***
[2026-02-26 01:45:16] 2026-02-26 00:45:01,039 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-26 01:45:16] 2026-02-26 00:45:01,039 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-26 01:45:16] 2026-02-26 00:45:01,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-26 01:45:16] 2026-02-26 00:45:01,039 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-26 01:45:16] 2026-02-26 00:45:01,039 | INFO     | job 7030292286 has completed (purged errors)
[2026-02-26 01:45:16] 2026-02-26 00:45:01,039 | INFO     | overall cleanup function is called
[2026-02-26 01:45:16] 2026-02-26 00:45:02,045 | INFO     | --- collectZombieJob: --- 10, [165667]
[2026-02-26 01:45:16] 2026-02-26 00:45:02,046 | INFO     | zombie collector waiting for pid 165667
[2026-02-26 01:45:16] 2026-02-26 00:45:02,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-26 01:45:16] 2026-02-26 00:45:02,046 | INFO     | collected zombie processes
[2026-02-26 01:45:16] 2026-02-26 00:45:02,046 | INFO     | will attempt to kill all subprocesses of pid=165667
[2026-02-26 01:45:16] 2026-02-26 00:45:02,096 | INFO     | process IDs to be killed: [165667] (in reverse order)
[2026-02-26 01:45:16] 2026-02-26 00:45:02,133 | WARNING  | found no corresponding commands to process id(s)
[2026-02-26 01:45:16] 2026-02-26 00:45:02,133 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-26 01:45:16] 2026-02-26 00:45:02,135 | INFO     | did not find any defunct processes belonging to 165667
[2026-02-26 01:45:16] 2026-02-26 00:45:02,137 | INFO     | did not find any defunct processes belonging to 165667
[2026-02-26 01:45:16] 2026-02-26 00:45:02,137 | INFO     | ready for new job
[2026-02-26 01:45:16] 2026-02-26 00:45:02,137 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-26 01:45:16] 2026-02-26 00:45:02,137 | INFO     | **************************************
[2026-02-26 01:45:16] 2026-02-26 00:45:02,138 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-26 01:45:16] 2026-02-26 00:45:02,138 | INFO     | **************************************
[2026-02-26 01:45:16] 2026-02-26 00:45:02,138 | INFO     | 
[2026-02-26 01:45:16] 2026-02-26 00:45:02,138 | INFO     | architecture information:
[2026-02-26 01:45:16] 2026-02-26 00:45:02,138 | INFO     | executing command: cat /etc/os-release
[2026-02-26 01:45:16] 2026-02-26 00:45:02,153 | INFO     | cat /etc/os-release:
[2026-02-26 01:45:16] NAME="CentOS Linux"
[2026-02-26 01:45:16] VERSION="7 (Core)"
[2026-02-26 01:45:16] ID="centos"
[2026-02-26 01:45:16] ID_LIKE="rhel fedora"
[2026-02-26 01:45:16] VERSION_ID="7"
[2026-02-26 01:45:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-26 01:45:16] ANSI_COLOR="0;31"
[2026-02-26 01:45:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-26 01:45:16] HOME_URL="https://www.centos.org/"
[2026-02-26 01:45:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-26 01:45:16] 
[2026-02-26 01:45:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-26 01:45:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-26 01:45:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-26 01:45:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-26 01:45:16] 
[2026-02-26 01:45:16] 2026-02-26 00:45:02,153 | INFO     | **************************************
[2026-02-26 01:45:16] 2026-02-26 00:45:02,656 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-26 01:45:16] 2026-02-26 00:45:02,674 | INFO     | sufficient remaining disk space (232251195392 B)
[2026-02-26 01:45:16] 2026-02-26 00:45:02,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-26 01:45:16] 2026-02-26 00:45:02,675 | INFO     | current server update state: UPDATING_FINAL
[2026-02-26 01:45:16] 2026-02-26 00:45:02,675 | INFO     | update_server=False
[2026-02-26 01:45:16] 2026-02-26 00:45:02,675 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-26 01:45:16] 2026-02-26 00:45:02,675 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-26 01:45:16] 2026-02-26 00:45:02,675 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-26 01:45:16] 2026-02-26 00:45:02,675 | INFO     | found 0 job(s) in 20 queues
[2026-02-26 01:45:16] 2026-02-26 00:45:02,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-26 01:45:16] 2026-02-26 00:45:02,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-26 01:45:16] 2026-02-26 00:45:02,979 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-26 01:45:16] 2026-02-26 00:45:02,979 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-26 01:45:16] 2026-02-26 00:45:02,979 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-26 01:45:16] 2026-02-26 00:45:02,979 | INFO     | will abort loop
[2026-02-26 01:45:16] 2026-02-26 00:45:03,456 | INFO     | all payload control threads have been joined
[2026-02-26 01:45:16] 2026-02-26 00:45:03,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-26 01:45:16] 2026-02-26 00:45:03,487 | INFO     | all data control threads have been joined
[2026-02-26 01:45:16] 2026-02-26 00:45:03,675 | INFO     | [job] retrieve thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:03,679 | INFO     | [job] queue monitor thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:03,985 | INFO     | [job] job monitor thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:04,050 | INFO     | all job control threads have been joined
[2026-02-26 01:45:16] 2026-02-26 00:45:04,225 | INFO     | [job] validate thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:04,276 | INFO     | [payload] execute_payloads thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:04,383 | INFO     | [job] create_data_payload thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:04,427 | INFO     | [payload] failed_post thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:04,438 | INFO     | [payload] validate_pre thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:04,462 | INFO     | [payload] control thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:04,493 | INFO     | [data] control thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:04,584 | INFO     | [data] copytool_in thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:04,819 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:04,958 | INFO     | [payload] validate_post thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:05,056 | INFO     | [job] control thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:05,474 | INFO     | [data] copytool_out thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:05,718 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-26 01:45:16] 2026-02-26 00:45:06,145 | INFO     | [monitor] cgroup control has ended
[2026-02-26 01:45:16] 2026-02-26 00:45:09,725 | INFO     | [data] queue_monitor thread has finished
[2026-02-26 01:45:16] 2026-02-26 00:45:11,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140187751937856)>', '<ExcThread(monitor, started 140187120166656)>']
[2026-02-26 01:45:16] 2026-02-26 00:45:11,723 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-26 01:45:16] 2026-02-26 00:45:11,723 | INFO     | [monitor] control thread has ended
[2026-02-26 01:45:16] 2026-02-26 00:45:16,444 | INFO     | all workflow threads have been joined
[2026-02-26 01:45:16] 2026-02-26 00:45:16,444 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-26 01:45:16] 2026-02-26 00:45:16,444 | INFO     | traces error code: 0
[2026-02-26 01:45:16] 2026-02-26 00:45:16,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-26 01:45:16] 2026-02-26 00:45:16,523 [wrapper] ==== pilot stdout END ====
[2026-02-26 01:45:16] 2026-02-26 00:45:16,528 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-26 01:45:16] 2026-02-26 00:45:16,532 [wrapper] pilotpid: 161145
[2026-02-26 01:45:16] 2026-02-26 00:45:16,536 [wrapper] Pilot exit status: 0
[2026-02-26 01:45:16] 2026-02-26 00:45:16,549 [wrapper] pandaids: 7030292286
[2026-02-26 01:45:16] 2026-02-26 00:45:16,572 [wrapper] cleanup supervisor_pilot  172165 161146
[2026-02-26 01:45:16] 2026-02-26 00:45:16,576 [wrapper] Test setup, not cleaning
[2026-02-26 01:45:16] 2026-02-26 00:45:16,580 [wrapper] apfmon messages muted
[2026-02-26 01:45:16] 2026-02-26 00:45:16,585 [wrapper] ==== wrapper stdout END ====
[2026-02-26 01:45:16] 2026-02-26 00:45:16,589 [wrapper] ==== wrapper stderr END ====
[2026-02-26 01:45:16]  *** Error codes and diagnostics ***
[2026-02-26 01:45:16]     "exeErrorCode": 0,
[2026-02-26 01:45:16]     "exeErrorDiag": "",
[2026-02-26 01:45:16]     "pilotErrorCode": 0,
[2026-02-26 01:45:16]     "pilotErrorDiag": "",
[2026-02-26 01:45:16]  *** Listing of results directory ***
[2026-02-26 01:45:16] total 497260
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc      5111 Feb 25 16:36 queuedata.json
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc    584627 Feb 25 16:36 pilot3.tar.gz
[2026-02-26 01:45:16] -rwx------ 1 boinc boinc     36322 Feb 25 16:37 runpilot2-wrapper.sh
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc       100 Feb 26 00:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-26 01:45:16] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 00:22 run_atlas
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc       105 Feb 26 00:22 job.xml
[2026-02-26 01:45:16] -rw-r--r-- 2 boinc boinc 285573635 Feb 26 00:22 EVNT.48343768._000001.pool.root.1
[2026-02-26 01:45:16] -rw-r--r-- 2 boinc boinc    597943 Feb 26 00:22 input.tar.gz
[2026-02-26 01:45:16] -rw-r--r-- 2 boinc boinc     15845 Feb 26 00:22 start_atlas.sh
[2026-02-26 01:45:16] drwxrwx--x 2 boinc boinc      4096 Feb 26 00:22 shared
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc         0 Feb 26 00:22 boinc_setup_complete
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc      6376 Feb 26 00:22 init_data.xml
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc         0 Feb 26 00:22 boinc_lockfile
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc      2559 Feb 26 00:22 pandaJob.out
[2026-02-26 01:45:16] -rw------- 1 boinc boinc    995706 Feb 26 00:22 agis_schedconf.cvmfs.json
[2026-02-26 01:45:16] -rw------- 1 boinc boinc   1513015 Feb 26 00:22 agis_ddmendpoints.agis.ALL.json
[2026-02-26 01:45:16] -rw------- 1 boinc boinc       427 Feb 26 00:22 workernode_map.json
[2026-02-26 01:45:16] drwx------ 5 boinc boinc      4096 Feb 26 00:23 pilot3
[2026-02-26 01:45:16] -rw------- 1 boinc boinc        95 Feb 26 01:44 pilot_heartbeat.json
[2026-02-26 01:45:16] -rw------- 1 boinc boinc 217733956 Feb 26 01:44 HITS.48838605._000010.pool.root.1
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc       529 Feb 26 01:44 boinc_task_state.xml
[2026-02-26 01:45:16] -rw------- 1 boinc boinc      1023 Feb 26 01:44 memory_monitor_summary.json
[2026-02-26 01:45:16] -rw------- 1 boinc boinc    264122 Feb 26 01:44 log.48838605._000010.job.log.tgz.1
[2026-02-26 01:45:16] -rw------- 1 boinc boinc      6306 Feb 26 01:45 heartbeat.json
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc      8192 Feb 26 01:45 boinc_mmap_file
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc        27 Feb 26 01:45 wrapper_checkpoint.txt
[2026-02-26 01:45:16] -rw------- 1 boinc boinc      4738 Feb 26 01:45 pilotlog.txt
[2026-02-26 01:45:16] -rw------- 1 boinc boinc    720161 Feb 26 01:45 log.48838605._000010.job.log.1
[2026-02-26 01:45:16] -rw------- 1 boinc boinc       357 Feb 26 01:45 output.list
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc       620 Feb 26 01:45 runtime_log
[2026-02-26 01:45:16] -rw------- 1 boinc boinc   1003520 Feb 26 01:45 result.tar.gz
[2026-02-26 01:45:16] -rw------- 1 boinc boinc       657 Feb 26 01:45 whcMDms7VF9n9Rq4apOajLDm4fhM0noT9bVooX4SDm2kyKDmxhXjNm.diag
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc      8896 Feb 26 01:45 runtime_log.err
[2026-02-26 01:45:16] -rw-r--r-- 1 boinc boinc     11347 Feb 26 01:45 stderr.txt
[2026-02-26 01:45:16] HITS file was successfully produced:
[2026-02-26 01:45:16] -rw------- 1 boinc boinc 217733956 Feb 26 01:44 shared/HITS.pool.root.1
[2026-02-26 01:45:16]  *** Contents of shared directory: ***
[2026-02-26 01:45:16] total 493104
[2026-02-26 01:45:16] -rw-r--r-- 2 boinc boinc 285573635 Feb 26 00:22 ATLAS.root_0
[2026-02-26 01:45:16] -rw-r--r-- 2 boinc boinc    597943 Feb 26 00:22 input.tar.gz
[2026-02-26 01:45:16] -rw-r--r-- 2 boinc boinc     15845 Feb 26 00:22 start_atlas.sh
[2026-02-26 01:45:16] -rw------- 1 boinc boinc 217733956 Feb 26 01:44 HITS.pool.root.1
[2026-02-26 01:45:16] -rw------- 1 boinc boinc   1003520 Feb 26 01:45 result.tar.gz
01:45:18 (157012): run_atlas exited; CPU time 18557.330389
01:45:18 (157012): called boinc_finish(0)

</stderr_txt>
]]>

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