Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:39:48 (382250): wrapper (7.7.26015): starting
23:39:48 (382250): wrapper: running run_atlas (--nthreads 3)
[2026-02-25 23:39:48] Arguments: --nthreads 3
[2026-02-25 23:39:48] Threads: 3
[2026-02-25 23:39:48] Checking for CVMFS
[2026-02-25 23:39:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-25 23:39:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-25 23:39:49] Running cvmfs_config stat atlas.cern.ch
[2026-02-25 23:39:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-25 23:39:49] 2.9.2.0 310932 535 58228 156631 1 50 28518332 36864000 0 130560 0 201562 99.974 25863 21642 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-25 23:39:49] CVMFS is ok
[2026-02-25 23:39:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-25 23:39:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-25 23:39:49] Further information can be found at the LHC@home message board.
[2026-02-25 23:39:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-25 23:39:49] Checking for apptainer binary...
[2026-02-25 23:39:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-25 23:39:49] Running /usr/bin/apptainer --version
[2026-02-25 23:39:49] apptainer version 1.4.1-1.1
[2026-02-25 23:39:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-25 23:39:49] atlasA223a
[2026-02-25 23:39:49] apptainer works
[2026-02-25 23:39:49] Set ATHENA_PROC_NUMBER=3
[2026-02-25 23:39:49] Set ATHENA_CORE_NUMBER=3
[2026-02-25 23:39:49] Starting ATLAS job with PandaID=7030274261
[2026-02-25 23:39:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-26 01:29:19]  *** The last 200 lines of the pilot log: ***
[2026-02-26 01:29:19] 2026-02-26 00:28:45,733 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-26 01:29:19] 2026-02-26 00:28:45,733 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-26 01:29:19] 2026-02-26 00:28:45,733 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-26 01:29:19] 2026-02-26 00:28:45,733 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-26 01:29:19] 2026-02-26 00:28:45,733 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-26 01:29:19] 2026-02-26 00:28:45,733 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-26 01:29:19] 2026-02-26 00:28:45,734 | INFO     | job 7030274261 has completed (purged errors)
[2026-02-26 01:29:19] 2026-02-26 00:28:45,734 | INFO     | overall cleanup function is called
[2026-02-26 01:29:19] 2026-02-26 00:28:46,740 | INFO     | --- collectZombieJob: --- 10, [390722]
[2026-02-26 01:29:19] 2026-02-26 00:28:46,740 | INFO     | zombie collector waiting for pid 390722
[2026-02-26 01:29:19] 2026-02-26 00:28:46,740 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-26 01:29:19] 2026-02-26 00:28:46,741 | INFO     | collected zombie processes
[2026-02-26 01:29:19] 2026-02-26 00:28:46,741 | INFO     | will attempt to kill all subprocesses of pid=390722
[2026-02-26 01:29:19] 2026-02-26 00:28:46,781 | INFO     | process IDs to be killed: [390722] (in reverse order)
[2026-02-26 01:29:19] 2026-02-26 00:28:46,808 | WARNING  | found no corresponding commands to process id(s)
[2026-02-26 01:29:19] 2026-02-26 00:28:46,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-26 01:29:19] 2026-02-26 00:28:46,809 | INFO     | did not find any defunct processes belonging to 390722
[2026-02-26 01:29:19] 2026-02-26 00:28:46,810 | INFO     | did not find any defunct processes belonging to 390722
[2026-02-26 01:29:19] 2026-02-26 00:28:46,810 | INFO     | ready for new job
[2026-02-26 01:29:19] 2026-02-26 00:28:46,810 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-26 01:29:19] 2026-02-26 00:28:46,811 | INFO     | **************************************
[2026-02-26 01:29:19] 2026-02-26 00:28:46,811 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-26 01:29:19] 2026-02-26 00:28:46,811 | INFO     | **************************************
[2026-02-26 01:29:19] 2026-02-26 00:28:46,811 | INFO     | 
[2026-02-26 01:29:19] 2026-02-26 00:28:46,811 | INFO     | architecture information:
[2026-02-26 01:29:19] 2026-02-26 00:28:46,811 | INFO     | executing command: cat /etc/os-release
[2026-02-26 01:29:19] 2026-02-26 00:28:46,821 | INFO     | cat /etc/os-release:
[2026-02-26 01:29:19] NAME="CentOS Linux"
[2026-02-26 01:29:19] VERSION="7 (Core)"
[2026-02-26 01:29:19] ID="centos"
[2026-02-26 01:29:19] ID_LIKE="rhel fedora"
[2026-02-26 01:29:19] VERSION_ID="7"
[2026-02-26 01:29:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-26 01:29:19] ANSI_COLOR="0;31"
[2026-02-26 01:29:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-26 01:29:19] HOME_URL="https://www.centos.org/"
[2026-02-26 01:29:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-26 01:29:19] 
[2026-02-26 01:29:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-26 01:29:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-26 01:29:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-26 01:29:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-26 01:29:19] 
[2026-02-26 01:29:19] 2026-02-26 00:28:46,821 | INFO     | **************************************
[2026-02-26 01:29:19] 2026-02-26 00:28:47,324 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-26 01:29:19] 2026-02-26 00:28:47,337 | INFO     | sufficient remaining disk space (330415734784 B)
[2026-02-26 01:29:19] 2026-02-26 00:28:47,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-26 01:29:19] 2026-02-26 00:28:47,338 | INFO     | current server update state: UPDATING_FINAL
[2026-02-26 01:29:19] 2026-02-26 00:28:47,338 | INFO     | update_server=False
[2026-02-26 01:29:19] 2026-02-26 00:28:47,338 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-26 01:29:19] 2026-02-26 00:28:47,338 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-26 01:29:19] 2026-02-26 00:28:47,338 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-26 01:29:19] 2026-02-26 00:28:47,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-26 01:29:19] 2026-02-26 00:28:47,612 | WARNING  | process 390722 can no longer be monitored (due to stat problems) - aborting
[2026-02-26 01:29:19] 2026-02-26 00:28:47,640 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-26 01:29:19] 2026-02-26 00:28:47,674 | INFO     | number of running child processes to parent process 390722: 1
[2026-02-26 01:29:19] 2026-02-26 00:28:47,674 | INFO     | maximum number of monitored processes: 6
[2026-02-26 01:29:19] 2026-02-26 00:28:47,674 | INFO     | aborting job monitoring since job object (job id=7030274261) has expired
[2026-02-26 01:29:19] 2026-02-26 00:28:47,674 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-26 01:29:19] 2026-02-26 00:28:47,674 | INFO     | will abort loop
[2026-02-26 01:29:19] 2026-02-26 00:28:47,684 | INFO     | all payload control threads have been joined
[2026-02-26 01:29:19] 2026-02-26 00:28:47,737 | INFO     | all data control threads have been joined
[2026-02-26 01:29:19] 2026-02-26 00:28:47,990 | INFO     | job.realtimelogging is not enabled
[2026-02-26 01:29:19] 2026-02-26 00:28:48,343 | INFO     | [job] retrieve thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:48,344 | INFO     | [job] queue monitor thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:48,680 | INFO     | [job] job monitor thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:48,690 | INFO     | [payload] control thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:48,742 | INFO     | [data] control thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:48,828 | INFO     | [payload] execute_payloads thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:48,887 | INFO     | all job control threads have been joined
[2026-02-26 01:29:19] 2026-02-26 00:28:48,996 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:49,081 | INFO     | [job] validate thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:49,267 | INFO     | [payload] validate_post thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:49,322 | INFO     | [payload] validate_pre thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:49,344 | INFO     | [data] copytool_out thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:49,350 | INFO     | [job] create_data_payload thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:49,567 | INFO     | [payload] failed_post thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:49,692 | INFO     | [data] copytool_in thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:49,890 | INFO     | [job] control thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:28:51,345 | INFO     | [data] queue_monitor thread has finished
[2026-02-26 01:29:19] 2026-02-26 00:29:13,079 | INFO     | [monitor] cgroup control has ended
[2026-02-26 01:29:19] 2026-02-26 00:29:14,828 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140491134830400)>', '<ExcThread(monitor, started 140490125080320)>']
[2026-02-26 01:29:19] 2026-02-26 00:29:17,332 | INFO     | PID=386291 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-26 01:29:19] 2026-02-26 00:29:17,332 | INFO     | found 0 job(s) in 20 queues
[2026-02-26 01:29:19] 2026-02-26 00:29:17,332 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-26 01:29:19] 2026-02-26 00:29:17,332 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-26 01:29:19] 2026-02-26 00:29:17,332 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-26 01:29:19] 2026-02-26 00:29:17,332 | INFO     | [monitor] control thread has ended
[2026-02-26 01:29:19] 2026-02-26 00:29:19,854 | INFO     | all workflow threads have been joined
[2026-02-26 01:29:19] 2026-02-26 00:29:19,854 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-26 01:29:19] 2026-02-26 00:29:19,855 | INFO     | traces error code: 0
[2026-02-26 01:29:19] 2026-02-26 00:29:19,855 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-26 01:29:19] 2026-02-26 00:29:19,903 [wrapper] ==== pilot stdout END ====
[2026-02-26 01:29:19] 2026-02-26 00:29:19,905 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-26 01:29:19] 2026-02-26 00:29:19,908 [wrapper] pilotpid: 386291
[2026-02-26 01:29:19] 2026-02-26 00:29:19,910 [wrapper] Pilot exit status: 0
[2026-02-26 01:29:19] 2026-02-26 00:29:19,918 [wrapper] pandaids: 7030274261
[2026-02-26 01:29:19] 2026-02-26 00:29:19,935 [wrapper] cleanup supervisor_pilot  396380 386292
[2026-02-26 01:29:19] 2026-02-26 00:29:19,938 [wrapper] Test setup, not cleaning
[2026-02-26 01:29:19] 2026-02-26 00:29:19,940 [wrapper] apfmon messages muted
[2026-02-26 01:29:19] 2026-02-26 00:29:19,943 [wrapper] ==== wrapper stdout END ====
[2026-02-26 01:29:19] 2026-02-26 00:29:19,946 [wrapper] ==== wrapper stderr END ====
[2026-02-26 01:29:19]  *** Error codes and diagnostics ***
[2026-02-26 01:29:19]     "exeErrorCode": 0,
[2026-02-26 01:29:19]     "exeErrorDiag": "",
[2026-02-26 01:29:19]     "pilotErrorCode": 0,
[2026-02-26 01:29:19]     "pilotErrorDiag": "",
[2026-02-26 01:29:19]  *** Listing of results directory ***
[2026-02-26 01:29:19] total 506224
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc    584627 Feb 25 14:38 pilot3.tar.gz
[2026-02-26 01:29:19] -rwx------ 1 boinc boinc     36322 Feb 25 14:40 runpilot2-wrapper.sh
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc      5111 Feb 25 14:41 queuedata.json
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc       100 Feb 25 23:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-26 01:29:19] -rwxr-xr-x 1 boinc boinc      7986 Feb 25 23:39 run_atlas
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc       105 Feb 25 23:39 job.xml
[2026-02-26 01:29:19] -rw-r--r-- 2 boinc boinc 288623967 Feb 25 23:39 EVNT.48220101._000039.pool.root.1
[2026-02-26 01:29:19] -rw-r--r-- 2 boinc boinc    597973 Feb 25 23:39 input.tar.gz
[2026-02-26 01:29:19] -rw-r--r-- 2 boinc boinc     15845 Feb 25 23:39 start_atlas.sh
[2026-02-26 01:29:19] drwxrwx--x 2 boinc boinc      4096 Feb 25 23:39 shared
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc         0 Feb 25 23:39 boinc_setup_complete
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc      6199 Feb 25 23:39 init_data.xml
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc         0 Feb 25 23:39 boinc_lockfile
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc      2578 Feb 25 23:39 pandaJob.out
[2026-02-26 01:29:19] -rw------- 1 boinc boinc    995706 Feb 25 23:39 agis_schedconf.cvmfs.json
[2026-02-26 01:29:19] -rw------- 1 boinc boinc   1513015 Feb 25 23:39 agis_ddmendpoints.agis.ALL.json
[2026-02-26 01:29:19] -rw------- 1 boinc boinc       430 Feb 25 23:40 workernode_map.json
[2026-02-26 01:29:19] drwx------ 5 boinc boinc      4096 Feb 25 23:40 pilot3
[2026-02-26 01:29:19] -rw------- 1 boinc boinc 223411138 Feb 26 01:28 HITS.48838432._000959.pool.root.1
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc       529 Feb 26 01:28 boinc_task_state.xml
[2026-02-26 01:29:19] -rw------- 1 boinc boinc        95 Feb 26 01:28 pilot_heartbeat.json
[2026-02-26 01:29:19] -rw------- 1 boinc boinc      1017 Feb 26 01:28 memory_monitor_summary.json
[2026-02-26 01:29:19] -rw------- 1 boinc boinc    270540 Feb 26 01:28 log.48838432._000959.job.log.tgz.1
[2026-02-26 01:29:19] -rw------- 1 boinc boinc      6313 Feb 26 01:28 heartbeat.json
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc      8192 Feb 26 01:28 boinc_mmap_file
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc        27 Feb 26 01:28 wrapper_checkpoint.txt
[2026-02-26 01:29:19] -rw------- 1 boinc boinc      5341 Feb 26 01:29 pilotlog.txt
[2026-02-26 01:29:19] -rw------- 1 boinc boinc    941152 Feb 26 01:29 log.48838432._000959.job.log.1
[2026-02-26 01:29:19] -rw------- 1 boinc boinc       357 Feb 26 01:29 output.list
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc       620 Feb 26 01:29 runtime_log
[2026-02-26 01:29:19] -rw------- 1 boinc boinc   1228800 Feb 26 01:29 result.tar.gz
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc      8916 Feb 26 01:29 runtime_log.err
[2026-02-26 01:29:19] -rw------- 1 boinc boinc       661 Feb 26 01:29 BEyLDmRJUF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmLjyKDmX9kjUn.diag
[2026-02-26 01:29:19] -rw-r--r-- 1 boinc boinc     12131 Feb 26 01:29 stderr.txt
[2026-02-26 01:29:20] HITS file was successfully produced:
[2026-02-26 01:29:20] -rw------- 1 boinc boinc 223411138 Feb 26 01:28 shared/HITS.pool.root.1
[2026-02-26 01:29:20]  *** Contents of shared directory: ***
[2026-02-26 01:29:20] total 501844
[2026-02-26 01:29:20] -rw-r--r-- 2 boinc boinc 288623967 Feb 25 23:39 ATLAS.root_0
[2026-02-26 01:29:20] -rw-r--r-- 2 boinc boinc    597973 Feb 25 23:39 input.tar.gz
[2026-02-26 01:29:20] -rw-r--r-- 2 boinc boinc     15845 Feb 25 23:39 start_atlas.sh
[2026-02-26 01:29:20] -rw------- 1 boinc boinc 223411138 Feb 26 01:28 HITS.pool.root.1
[2026-02-26 01:29:20] -rw------- 1 boinc boinc   1228800 Feb 26 01:29 result.tar.gz
01:29:21 (382250): run_atlas exited; CPU time 18822.150317
01:29:21 (382250): called boinc_finish(0)

</stderr_txt>
]]>

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