Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:56:59 (62370): wrapper (7.7.26015): starting
21:56:59 (62370): wrapper: running run_atlas (--nthreads 3)
[2026-02-25 21:56:59] Arguments: --nthreads 3
[2026-02-25 21:56:59] Threads: 3
[2026-02-25 21:56:59] Checking for CVMFS
[2026-02-25 21:56:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-25 21:57:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-25 21:57:00] Running cvmfs_config stat atlas.cern.ch
[2026-02-25 21:57:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-25 21:57:00] 2.9.2.0 34245 192 54948 156628 0 50 22510764 36864001 0 130560 0 80303 99.969 11030 10347 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-25 21:57:00] CVMFS is ok
[2026-02-25 21:57:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-25 21:57:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-25 21:57:00] Further information can be found at the LHC@home message board.
[2026-02-25 21:57:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-25 21:57:00] Checking for apptainer binary...
[2026-02-25 21:57:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-25 21:57:00] Running /usr/bin/apptainer --version
[2026-02-25 21:57:00] apptainer version 1.4.1-1.1
[2026-02-25 21:57:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-25 21:57:00] cosA121b
[2026-02-25 21:57:00] apptainer works
[2026-02-25 21:57:00] Set ATHENA_PROC_NUMBER=3
[2026-02-25 21:57:00] Set ATHENA_CORE_NUMBER=3
[2026-02-25 21:57:00] Starting ATLAS job with PandaID=7030264401
[2026-02-25 21:57:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-25 23:32:32]  *** The last 200 lines of the pilot log: ***
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | job 7030264401 has completed (purged errors)
[2026-02-25 23:32:32] 2026-02-25 22:32:00,146 | INFO     | overall cleanup function is called
[2026-02-25 23:32:32] 2026-02-25 22:32:01,153 | INFO     | --- collectZombieJob: --- 10, [70858]
[2026-02-25 23:32:32] 2026-02-25 22:32:01,153 | INFO     | zombie collector waiting for pid 70858
[2026-02-25 23:32:32] 2026-02-25 22:32:01,153 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-25 23:32:32] 2026-02-25 22:32:01,153 | INFO     | collected zombie processes
[2026-02-25 23:32:32] 2026-02-25 22:32:01,153 | INFO     | will attempt to kill all subprocesses of pid=70858
[2026-02-25 23:32:32] 2026-02-25 22:32:01,194 | INFO     | process IDs to be killed: [70858] (in reverse order)
[2026-02-25 23:32:32] 2026-02-25 22:32:01,218 | WARNING  | found no corresponding commands to process id(s)
[2026-02-25 23:32:32] 2026-02-25 22:32:01,218 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-25 23:32:32] 2026-02-25 22:32:01,219 | INFO     | did not find any defunct processes belonging to 70858
[2026-02-25 23:32:32] 2026-02-25 22:32:01,220 | INFO     | did not find any defunct processes belonging to 70858
[2026-02-25 23:32:32] 2026-02-25 22:32:01,220 | INFO     | ready for new job
[2026-02-25 23:32:32] 2026-02-25 22:32:01,220 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-25 23:32:32] 2026-02-25 22:32:01,221 | INFO     | **************************************
[2026-02-25 23:32:32] 2026-02-25 22:32:01,221 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-25 23:32:32] 2026-02-25 22:32:01,221 | INFO     | **************************************
[2026-02-25 23:32:32] 2026-02-25 22:32:01,221 | INFO     | 
[2026-02-25 23:32:32] 2026-02-25 22:32:01,221 | INFO     | architecture information:
[2026-02-25 23:32:32] 2026-02-25 22:32:01,221 | INFO     | executing command: cat /etc/os-release
[2026-02-25 23:32:32] 2026-02-25 22:32:01,230 | INFO     | cat /etc/os-release:
[2026-02-25 23:32:32] NAME="CentOS Linux"
[2026-02-25 23:32:32] VERSION="7 (Core)"
[2026-02-25 23:32:32] ID="centos"
[2026-02-25 23:32:32] ID_LIKE="rhel fedora"
[2026-02-25 23:32:32] VERSION_ID="7"
[2026-02-25 23:32:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-25 23:32:32] ANSI_COLOR="0;31"
[2026-02-25 23:32:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-25 23:32:32] HOME_URL="https://www.centos.org/"
[2026-02-25 23:32:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-25 23:32:32] 
[2026-02-25 23:32:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-25 23:32:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-25 23:32:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-25 23:32:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-25 23:32:32] 
[2026-02-25 23:32:32] 2026-02-25 22:32:01,230 | INFO     | **************************************
[2026-02-25 23:32:32] 2026-02-25 22:32:01,733 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-25 23:32:32] 2026-02-25 22:32:01,746 | INFO     | sufficient remaining disk space (337692852224 B)
[2026-02-25 23:32:32] 2026-02-25 22:32:01,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-25 23:32:32] 2026-02-25 22:32:01,747 | INFO     | current server update state: UPDATING_FINAL
[2026-02-25 23:32:32] 2026-02-25 22:32:01,747 | INFO     | update_server=False
[2026-02-25 23:32:32] 2026-02-25 22:32:01,747 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-25 23:32:32] 2026-02-25 22:32:01,747 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-25 23:32:32] 2026-02-25 22:32:02,117 | INFO     | all payload control threads have been joined
[2026-02-25 23:32:32] 2026-02-25 22:32:02,313 | INFO     | all data control threads have been joined
[2026-02-25 23:32:32] 2026-02-25 22:32:02,672 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-25 23:32:32] 2026-02-25 22:32:02,752 | INFO     | [job] retrieve thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:02,760 | INFO     | [payload] validate_pre thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:02,761 | INFO     | [job] create_data_payload thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:02,843 | INFO     | [payload] failed_post thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:02,924 | INFO     | [data] copytool_in thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:03,001 | WARNING  | process 70858 can no longer be monitored (due to stat problems) - aborting
[2026-02-25 23:32:32] 2026-02-25 22:32:03,014 | INFO     | all job control threads have been joined
[2026-02-25 23:32:32] 2026-02-25 22:32:03,029 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-25 23:32:32] 2026-02-25 22:32:03,064 | INFO     | number of running child processes to parent process 70858: 1
[2026-02-25 23:32:32] 2026-02-25 22:32:03,064 | INFO     | maximum number of monitored processes: 6
[2026-02-25 23:32:32] 2026-02-25 22:32:03,064 | INFO     | aborting job monitoring since job object (job id=7030264401) has expired
[2026-02-25 23:32:32] 2026-02-25 22:32:03,064 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-25 23:32:32] 2026-02-25 22:32:03,064 | INFO     | will abort loop
[2026-02-25 23:32:32] 2026-02-25 22:32:03,122 | INFO     | [payload] control thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:03,318 | INFO     | [data] control thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:03,352 | INFO     | [payload] execute_payloads thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:03,578 | INFO     | [payload] validate_post thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:04,020 | INFO     | [job] control thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:04,070 | INFO     | [job] job monitor thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:04,137 | INFO     | [job] validate thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:04,661 | INFO     | job.realtimelogging is not enabled
[2026-02-25 23:32:32] 2026-02-25 22:32:04,679 | INFO     | [data] copytool_out thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:04,730 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-25 23:32:32] 2026-02-25 22:32:05,666 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:05,736 | INFO     | [job] queue monitor thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:05,753 | INFO     | [data] queue_monitor thread has finished
[2026-02-25 23:32:32] 2026-02-25 22:32:15,264 | INFO     | [monitor] cgroup control has ended
[2026-02-25 23:32:32] 2026-02-25 22:32:17,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140152009590592)>', '<ExcThread(monitor, started 140151653115648)>']
[2026-02-25 23:32:32] 2026-02-25 22:32:22,282 | INFO     | all workflow threads have been joined
[2026-02-25 23:32:32] 2026-02-25 22:32:22,283 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-25 23:32:32] 2026-02-25 22:32:22,283 | INFO     | traces error code: 0
[2026-02-25 23:32:32] 2026-02-25 22:32:22,283 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-25 23:32:32] 2026-02-25 22:32:32,117 | INFO     | PID=66414 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-25 23:32:32] 2026-02-25 22:32:32,117 | INFO     | found 0 job(s) in 20 queues
[2026-02-25 23:32:32] 2026-02-25 22:32:32,117 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-25 23:32:32] 2026-02-25 22:32:32,117 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-25 23:32:32] 2026-02-25 22:32:32,117 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-25 23:32:32] 2026-02-25 22:32:32,117 | INFO     | [monitor] control thread has ended
[2026-02-25 23:32:32] 2026-02-25 22:32:32,162 [wrapper] ==== pilot stdout END ====
[2026-02-25 23:32:32] 2026-02-25 22:32:32,165 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-25 23:32:32] 2026-02-25 22:32:32,167 [wrapper] pilotpid: 66414
[2026-02-25 23:32:32] 2026-02-25 22:32:32,169 [wrapper] Pilot exit status: 0
[2026-02-25 23:32:32] 2026-02-25 22:32:32,176 [wrapper] pandaids: 7030264401
[2026-02-25 23:32:32] 2026-02-25 22:32:32,191 [wrapper] cleanup supervisor_pilot   76892 66415
[2026-02-25 23:32:32] 2026-02-25 22:32:32,194 [wrapper] Test setup, not cleaning
[2026-02-25 23:32:32] 2026-02-25 22:32:32,196 [wrapper] apfmon messages muted
[2026-02-25 23:32:32] 2026-02-25 22:32:32,199 [wrapper] ==== wrapper stdout END ====
[2026-02-25 23:32:32] 2026-02-25 22:32:32,201 [wrapper] ==== wrapper stderr END ====
[2026-02-25 23:32:32]  *** Error codes and diagnostics ***
[2026-02-25 23:32:32]     "exeErrorCode": 0,
[2026-02-25 23:32:32]     "exeErrorDiag": "",
[2026-02-25 23:32:32]     "pilotErrorCode": 0,
[2026-02-25 23:32:32]     "pilotErrorDiag": "",
[2026-02-25 23:32:32]  *** Listing of results directory ***
[2026-02-25 23:32:32] total 484688
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc    584627 Feb 25 14:22 pilot3.tar.gz
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc      5111 Feb 25 14:29 queuedata.json
[2026-02-25 23:32:32] -rwx------ 1 boinc boinc     36322 Feb 25 14:29 runpilot2-wrapper.sh
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc       100 Feb 25 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-25 23:32:32] -rwxr-xr-x 1 boinc boinc      7986 Feb 25 21:56 run_atlas
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc       105 Feb 25 21:56 job.xml
[2026-02-25 23:32:32] -rw-r--r-- 2 boinc boinc 278080117 Feb 25 21:56 EVNT.48220229._000031.pool.root.1
[2026-02-25 23:32:32] -rw-r--r-- 2 boinc boinc    597971 Feb 25 21:56 input.tar.gz
[2026-02-25 23:32:32] -rw-r--r-- 2 boinc boinc     15845 Feb 25 21:56 start_atlas.sh
[2026-02-25 23:32:32] drwxrwx--x 2 boinc boinc      4096 Feb 25 21:56 shared
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc         0 Feb 25 21:56 boinc_setup_complete
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc      6440 Feb 25 21:56 init_data.xml
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc         0 Feb 25 21:56 boinc_lockfile
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc      2565 Feb 25 21:57 pandaJob.out
[2026-02-25 23:32:32] -rw------- 1 boinc boinc    995714 Feb 25 21:57 agis_schedconf.cvmfs.json
[2026-02-25 23:32:32] -rw------- 1 boinc boinc   1513015 Feb 25 21:57 agis_ddmendpoints.agis.ALL.json
[2026-02-25 23:32:32] -rw------- 1 boinc boinc       428 Feb 25 21:57 workernode_map.json
[2026-02-25 23:32:32] drwx------ 5 boinc boinc      4096 Feb 25 21:57 pilot3
[2026-02-25 23:32:32] -rw------- 1 boinc boinc        95 Feb 25 23:31 pilot_heartbeat.json
[2026-02-25 23:32:32] -rw------- 1 boinc boinc 212126378 Feb 25 23:31 HITS.48838591._000773.pool.root.1
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc       529 Feb 25 23:31 boinc_task_state.xml
[2026-02-25 23:32:32] -rw------- 1 boinc boinc      1033 Feb 25 23:31 memory_monitor_summary.json
[2026-02-25 23:32:32] -rw------- 1 boinc boinc    276282 Feb 25 23:31 log.48838591._000773.job.log.tgz.1
[2026-02-25 23:32:32] -rw------- 1 boinc boinc      6309 Feb 25 23:31 heartbeat.json
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc        27 Feb 25 23:32 wrapper_checkpoint.txt
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc      8192 Feb 25 23:32 boinc_mmap_file
[2026-02-25 23:32:32] -rw------- 1 boinc boinc       745 Feb 25 23:32 pilotlog.txt
[2026-02-25 23:32:32] -rw------- 1 boinc boinc    826047 Feb 25 23:32 log.48838591._000773.job.log.1
[2026-02-25 23:32:32] -rw------- 1 boinc boinc       357 Feb 25 23:32 output.list
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc       620 Feb 25 23:32 runtime_log
[2026-02-25 23:32:32] -rw------- 1 boinc boinc   1116160 Feb 25 23:32 result.tar.gz
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc      8906 Feb 25 23:32 runtime_log.err
[2026-02-25 23:32:32] -rw------- 1 boinc boinc       659 Feb 25 23:32 QHnNDmk8TF9n9Rq4apOajLDm4fhM0noT9bVooX4SDm2NyKDmTidYmn.diag
[2026-02-25 23:32:32] -rw-r--r-- 1 boinc boinc     12631 Feb 25 23:32 stderr.txt
[2026-02-25 23:32:32] HITS file was successfully produced:
[2026-02-25 23:32:32] -rw------- 1 boinc boinc 212126378 Feb 25 23:31 shared/HITS.pool.root.1
[2026-02-25 23:32:32]  *** Contents of shared directory: ***
[2026-02-25 23:32:32] total 480416
[2026-02-25 23:32:32] -rw-r--r-- 2 boinc boinc 278080117 Feb 25 21:56 ATLAS.root_0
[2026-02-25 23:32:32] -rw-r--r-- 2 boinc boinc    597971 Feb 25 21:56 input.tar.gz
[2026-02-25 23:32:32] -rw-r--r-- 2 boinc boinc     15845 Feb 25 21:56 start_atlas.sh
[2026-02-25 23:32:32] -rw------- 1 boinc boinc 212126378 Feb 25 23:31 HITS.pool.root.1
[2026-02-25 23:32:32] -rw------- 1 boinc boinc   1116160 Feb 25 23:32 result.tar.gz
23:32:33 (62370): run_atlas exited; CPU time 16391.780227
23:32:33 (62370): called boinc_finish(0)

</stderr_txt>
]]>

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