Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:39:17 (2308): wrapper (7.7.26015): starting
12:39:17 (2308): wrapper: running run_atlas (--nthreads 8)
[2026-02-25 12:39:17] Arguments: --nthreads 8
[2026-02-25 12:39:17] Threads: 8
[2026-02-25 12:39:17] Checking for CVMFS
[2026-02-25 12:39:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-25 12:39:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-25 12:39:18] Running cvmfs_config stat atlas.cern.ch
[2026-02-25 12:39:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-25 12:39:18] 2.11.2.0 2937 83591 91920 156621 2 51 18607440 20275201 1 130560 0 22294476 99.890 4667855 30554 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-25 12:39:18] CVMFS is ok
[2026-02-25 12:39:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-25 12:39:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-25 12:39:18] Further information can be found at the LHC@home message board.
[2026-02-25 12:39:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-25 12:39:18] Checking for apptainer binary...
[2026-02-25 12:39:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-25 12:39:18] Running /usr/bin/apptainer --version
[2026-02-25 12:39:18] apptainer version 1.3.2-1.el7
[2026-02-25 12:39:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-25 12:39:19] c-115-5.aglt2.org
[2026-02-25 12:39:19] apptainer works
[2026-02-25 12:39:19] Set ATHENA_PROC_NUMBER=8
[2026-02-25 12:39:19] Set ATHENA_CORE_NUMBER=8
[2026-02-25 12:39:20] Starting ATLAS job with PandaID=7030275590
[2026-02-25 12:39:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:12:35 (29094): wrapper (7.7.26015): starting
14:12:35 (29094): wrapper: running run_atlas (--nthreads 8)
[2026-02-25 14:12:35] Arguments: --nthreads 8
[2026-02-25 14:12:35] Threads: 8
[2026-02-25 14:12:35] This job has been restarted, cleaning up previous attempt
[2026-02-25 14:12:35] Checking for CVMFS
[2026-02-25 14:12:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-25 14:12:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-25 14:12:35] Running cvmfs_config stat atlas.cern.ch
[2026-02-25 14:12:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-25 14:12:36] 2.11.2.0 2937 83684 92164 156624 3 1 18759091 20275200 1 130560 0 22347832 99.890 4672315 30559 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-25 14:12:36] CVMFS is ok
[2026-02-25 14:12:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-25 14:12:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-25 14:12:36] Further information can be found at the LHC@home message board.
[2026-02-25 14:12:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-25 14:12:36] Checking for apptainer binary...
[2026-02-25 14:12:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-25 14:12:36] Running /usr/bin/apptainer --version
[2026-02-25 14:12:36] apptainer version 1.3.2-1.el7
[2026-02-25 14:12:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-25 14:12:38] c-115-5.aglt2.org
[2026-02-25 14:12:38] apptainer works
[2026-02-25 14:12:38] Set ATHENA_PROC_NUMBER=8
[2026-02-25 14:12:38] Set ATHENA_CORE_NUMBER=8
[2026-02-25 14:12:38] Starting ATLAS job with PandaID=7030275590
[2026-02-25 14:12:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-25 16:34:19]  *** The last 200 lines of the pilot log: ***
[2026-02-25 16:34:19] 2026-02-25 21:33:47,179 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,179 | INFO     | log transfer has been attempted: DONE
[2026-02-25 16:34:19] 2026-02-25 21:33:47,180 | INFO     | job 7030275590 has finished - writing final server update
[2026-02-25 16:34:19] 2026-02-25 21:33:47,180 | INFO     | total number of processed events: 400 (read)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,182 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7030275590/memory_monitor_summary.json (trf name=prmon)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,183 | INFO     | extracted standard info from prmon json
[2026-02-25 16:34:19] 2026-02-25 21:33:47,183 | INFO     | extracted standard memory fields from prmon json
[2026-02-25 16:34:19] 2026-02-25 21:33:47,183 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-25 16:34:19] 2026-02-25 21:33:47,184 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-25 16:34:19] 2026-02-25 21:33:47,184 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-25 16:34:19] 2026-02-25 21:33:47,187 | INFO     | fitting pss+swap vs Time
[2026-02-25 16:34:19] 2026-02-25 21:33:47,187 | INFO     | sum of square deviations: 814878534.5
[2026-02-25 16:34:19] 2026-02-25 21:33:47,188 | INFO     | sum of deviations: 18767029785.999996
[2026-02-25 16:34:19] 2026-02-25 21:33:47,188 | INFO     | mean x: 1772050979.5
[2026-02-25 16:34:19] 2026-02-25 21:33:47,188 | INFO     | mean y: 2538759.579710145
[2026-02-25 16:34:19] 2026-02-25 21:33:47,189 | INFO     | intersect: -40808615426.72186
[2026-02-25 16:34:19] 2026-02-25 21:33:47,189 | INFO     | chi2: 1.429587616404426
[2026-02-25 16:34:19] 2026-02-25 21:33:47,189 | INFO     | sum of square deviations: 729472282.0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,190 | INFO     | sum of deviations: 18146071380.000008
[2026-02-25 16:34:19] 2026-02-25 21:33:47,190 | INFO     | mean x: 1772050827.0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,190 | INFO     | mean y: 2537650.5939849624
[2026-02-25 16:34:19] 2026-02-25 21:33:47,190 | INFO     | intersect: -44078315850.19749
[2026-02-25 16:34:19] 2026-02-25 21:33:47,190 | INFO     | chi2: 1.4309223120608168
[2026-02-25 16:34:19] 2026-02-25 21:33:47,190 | INFO     | current chi2=1.4309223120608168 (change=-0.09336228441510781 %)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,191 | INFO     | right removable region: 132
[2026-02-25 16:34:19] 2026-02-25 21:33:47,191 | INFO     | sum of square deviations: 729472282.0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,191 | INFO     | sum of deviations: -3031900567.9999995
[2026-02-25 16:34:19] 2026-02-25 21:33:47,191 | INFO     | mean x: 1772051132.0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,192 | INFO     | mean y: 2577150.7443609023
[2026-02-25 16:34:19] 2026-02-25 21:33:47,192 | INFO     | intersect: 7367740935.86518
[2026-02-25 16:34:19] 2026-02-25 21:33:47,192 | INFO     | chi2: 0.03445512029692977
[2026-02-25 16:34:19] 2026-02-25 21:33:47,192 | INFO     | current chi2=0.03445512029692977 (change=97.58985599052765 %)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,192 | INFO     | sum of square deviations: 650252192.0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,193 | INFO     | sum of deviations: -5104798054.0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,193 | INFO     | mean x: 1772051284.5
[2026-02-25 16:34:19] 2026-02-25 21:33:47,193 | INFO     | mean y: 2581054.28125
[2026-02-25 16:34:19] 2026-02-25 21:33:47,193 | INFO     | intersect: 13914051188.477737
[2026-02-25 16:34:19] 2026-02-25 21:33:47,194 | INFO     | chi2: 0.009180101056019541
[2026-02-25 16:34:19] 2026-02-25 21:33:47,194 | INFO     | current chi2=0.009180101056019541 (change=73.3563517500255 %)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,194 | INFO     | sum of square deviations: 576985702.0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,194 | INFO     | sum of deviations: -4906274651.999999
[2026-02-25 16:34:19] 2026-02-25 21:33:47,195 | INFO     | mean x: 1772051437.0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,195 | INFO     | mean y: 2580633.7154471544
[2026-02-25 16:34:19] 2026-02-25 21:33:47,195 | INFO     | intersect: 15070841454.14263
[2026-02-25 16:34:19] 2026-02-25 21:33:47,195 | INFO     | chi2: 0.008799818097360742
[2026-02-25 16:34:19] 2026-02-25 21:33:47,195 | INFO     | current chi2=0.008799818097360742 (change=4.142470288052454 %)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,195 | INFO     | left removable region: 30
[2026-02-25 16:34:19] 2026-02-25 21:33:47,195 | INFO     | sum of square deviations: 329031285.5
[2026-02-25 16:34:19] 2026-02-25 21:33:47,196 | INFO     | sum of deviations: -2454359156.0000005
[2026-02-25 16:34:19] 2026-02-25 21:33:47,196 | INFO     | mean x: 1772051711.5
[2026-02-25 16:34:19] 2026-02-25 21:33:47,196 | INFO     | mean y: 2575193.6274509802
[2026-02-25 16:34:19] 2026-02-25 21:33:47,196 | INFO     | intersect: 13220927170.146402
[2026-02-25 16:34:19] 2026-02-25 21:33:47,197 | INFO     | chi2: 0.007522489397809431
[2026-02-25 16:34:19] 2026-02-25 21:33:47,197 | INFO     | current memory leak: -7.46 B/s (using 102 data points, chi2=0.01)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,197 | INFO     | could have reported an average CPU frequency of 1745 MHz (8 samples)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,197 | INFO     | ..............................
[2026-02-25 16:34:19] 2026-02-25 21:33:47,197 | INFO     | . Timing measurements:
[2026-02-25 16:34:19] 2026-02-25 21:33:47,197 | INFO     | . get job = 0 s
[2026-02-25 16:34:19] 2026-02-25 21:33:47,197 | INFO     | . initial setup = 1 s
[2026-02-25 16:34:19] 2026-02-25 21:33:47,198 | INFO     | . payload setup = 8 s
[2026-02-25 16:34:19] 2026-02-25 21:33:47,198 | INFO     | . stage-in = 0 s
[2026-02-25 16:34:19] 2026-02-25 21:33:47,198 | INFO     | . payload execution = 8422 s
[2026-02-25 16:34:19] 2026-02-25 21:33:47,198 | INFO     | . stage-out = 2 s
[2026-02-25 16:34:19] 2026-02-25 21:33:47,198 | INFO     | . log creation = 0 s
[2026-02-25 16:34:19] 2026-02-25 21:33:47,198 | INFO     | ..............................
[2026-02-25 16:34:19] 2026-02-25 21:33:47,278 | INFO     | 
[2026-02-25 16:34:19] 2026-02-25 21:33:47,278 | INFO     | job summary report
[2026-02-25 16:34:19] 2026-02-25 21:33:47,278 | INFO     | --------------------------------------------------
[2026-02-25 16:34:19] 2026-02-25 21:33:47,278 | INFO     | PanDA job id: 7030275590
[2026-02-25 16:34:19] 2026-02-25 21:33:47,278 | INFO     | task id: 48838416
[2026-02-25 16:34:19] 2026-02-25 21:33:47,278 | INFO     | errors: (none)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,279 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-25 16:34:19] 2026-02-25 21:33:47,279 | INFO     | pilot state: finished 
[2026-02-25 16:34:19] 2026-02-25 21:33:47,279 | INFO     | transexitcode: 0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,279 | INFO     | exeerrorcode: 0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,279 | INFO     | exeerrordiag: 
[2026-02-25 16:34:19] 2026-02-25 21:33:47,279 | INFO     | exitcode: 0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,279 | INFO     | exitmsg: OK
[2026-02-25 16:34:19] 2026-02-25 21:33:47,279 | INFO     | cpuconsumptiontime: 60750 s
[2026-02-25 16:34:19] 2026-02-25 21:33:47,279 | INFO     | nevents: 400
[2026-02-25 16:34:19] 2026-02-25 21:33:47,279 | INFO     | neventsw: 0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,280 | INFO     | pid: 3267
[2026-02-25 16:34:19] 2026-02-25 21:33:47,280 | INFO     | pgrp: 3267
[2026-02-25 16:34:19] 2026-02-25 21:33:47,280 | INFO     | corecount: 8
[2026-02-25 16:34:19] 2026-02-25 21:33:47,280 | INFO     | event service: False
[2026-02-25 16:34:19] 2026-02-25 21:33:47,280 | INFO     | sizes: {0: 2281847, 1: 2282308, 11: 2282308, 8434: 2310197, 8438: 2319195, 8440: 2319251, 8441: 2319573}
[2026-02-25 16:34:19] 2026-02-25 21:33:47,280 | INFO     | --------------------------------------------------
[2026-02-25 16:34:19] 2026-02-25 21:33:47,280 | INFO     | 
[2026-02-25 16:34:19] 2026-02-25 21:33:47,280 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-25 16:34:19] 2026-02-25 21:33:47,315 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,315 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,315 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,316 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,316 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,316 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,316 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,316 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,316 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,317 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,317 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,317 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,317 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,318 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,318 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,318 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,318 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-25 16:34:19] 2026-02-25 21:33:47,318 | INFO     | job 7030275590 has completed (purged errors)
[2026-02-25 16:34:19] 2026-02-25 21:33:47,319 | INFO     | overall cleanup function is called
[2026-02-25 16:34:19] 2026-02-25 21:33:48,327 | INFO     | --- collectZombieJob: --- 10, [3267]
[2026-02-25 16:34:19] 2026-02-25 21:33:48,327 | INFO     | zombie collector waiting for pid 3267
[2026-02-25 16:34:19] 2026-02-25 21:33:48,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-25 16:34:19] 2026-02-25 21:33:48,327 | INFO     | collected zombie processes
[2026-02-25 16:34:19] 2026-02-25 21:33:48,327 | INFO     | will attempt to kill all subprocesses of pid=3267
[2026-02-25 16:34:19] 2026-02-25 21:33:48,411 | INFO     | process IDs to be killed: [3267] (in reverse order)
[2026-02-25 16:34:19] 2026-02-25 21:33:48,466 | WARNING  | found no corresponding commands to process id(s)
[2026-02-25 16:34:19] 2026-02-25 21:33:48,467 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-25 16:34:19] 2026-02-25 21:33:48,471 | INFO     | did not find any defunct processes belonging to 3267
[2026-02-25 16:34:19] 2026-02-25 21:33:48,475 | INFO     | did not find any defunct processes belonging to 3267
[2026-02-25 16:34:19] 2026-02-25 21:33:48,475 | INFO     | ready for new job
[2026-02-25 16:34:19] 2026-02-25 21:33:48,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-25 16:34:19] 2026-02-25 21:33:48,477 | INFO     | **************************************
[2026-02-25 16:34:19] 2026-02-25 21:33:48,477 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-25 16:34:19] 2026-02-25 21:33:48,478 | INFO     | **************************************
[2026-02-25 16:34:19] 2026-02-25 21:33:48,478 | INFO     | 
[2026-02-25 16:34:19] 2026-02-25 21:33:48,478 | INFO     | architecture information:
[2026-02-25 16:34:19] 2026-02-25 21:33:48,479 | INFO     | executing command: cat /etc/os-release
[2026-02-25 16:34:19] 2026-02-25 21:33:48,496 | INFO     | cat /etc/os-release:
[2026-02-25 16:34:19] NAME="CentOS Linux"
[2026-02-25 16:34:19] VERSION="7 (Core)"
[2026-02-25 16:34:19] ID="centos"
[2026-02-25 16:34:19] ID_LIKE="rhel fedora"
[2026-02-25 16:34:19] VERSION_ID="7"
[2026-02-25 16:34:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-25 16:34:19] ANSI_COLOR="0;31"
[2026-02-25 16:34:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-25 16:34:19] HOME_URL="https://www.centos.org/"
[2026-02-25 16:34:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-25 16:34:19] 
[2026-02-25 16:34:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-25 16:34:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-25 16:34:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-25 16:34:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-25 16:34:19] 
[2026-02-25 16:34:19] 2026-02-25 21:33:48,497 | INFO     | **************************************
[2026-02-25 16:34:19] 2026-02-25 21:33:49,000 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-25 16:34:19] 2026-02-25 21:33:49,019 | INFO     | sufficient remaining disk space (18388877312 B)
[2026-02-25 16:34:19] 2026-02-25 21:33:49,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-25 16:34:19] 2026-02-25 21:33:49,020 | INFO     | current server update state: UPDATING_FINAL
[2026-02-25 16:34:19] 2026-02-25 21:33:49,020 | INFO     | update_server=False
[2026-02-25 16:34:19] 2026-02-25 21:33:49,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-25 16:34:19] 2026-02-25 21:33:49,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-25 16:34:19] 2026-02-25 21:33:49,021 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-25 16:34:19] 2026-02-25 21:33:49,022 | INFO     | aborting loop
[2026-02-25 16:34:19] 2026-02-25 21:33:49,452 | INFO     | all job control threads have been joined
[2026-02-25 16:34:19] 2026-02-25 21:33:49,517 | INFO     | all data control threads have been joined
[2026-02-25 16:34:19] 2026-02-25 21:33:49,803 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-25 16:34:19] 2026-02-25 21:33:50,026 | INFO     | [job] retrieve thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:50,026 | INFO     | [job] job monitor thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:50,027 | INFO     | [job] queue monitor thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:50,040 | INFO     | [job] create_data_payload thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:50,096 | INFO     | [payload] validate_pre thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:50,238 | INFO     | all payload control threads have been joined
[2026-02-25 16:34:19] 2026-02-25 21:33:50,458 | INFO     | [job] control thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:50,523 | INFO     | [data] control thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:50,534 | INFO     | [job] validate thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:50,768 | INFO     | [payload] execute_payloads thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:50,898 | INFO     | [data] copytool_in thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:51,242 | INFO     | [payload] control thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:51,441 | INFO     | [payload] validate_post thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:51,497 | INFO     | [payload] failed_post thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:51,809 | INFO     | [data] copytool_out thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:33:52,512 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-25 16:34:19] 2026-02-25 21:33:56,518 | INFO     | [data] queue_monitor thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:34:00,020 | INFO     | job.realtimelogging is not enabled
[2026-02-25 16:34:19] 2026-02-25 21:34:01,025 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-25 16:34:19] 2026-02-25 21:34:08,767 | INFO     | [monitor] cgroup control has ended
[2026-02-25 16:34:19] 2026-02-25 21:34:09,615 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140542805190464)>', '<ExcThread(monitor, started 140541815658240)>']
[2026-02-25 16:34:19] 2026-02-25 21:34:14,621 | INFO     | all workflow threads have been joined
[2026-02-25 16:34:19] 2026-02-25 21:34:14,622 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-25 16:34:19] 2026-02-25 21:34:14,622 | INFO     | traces error code: 0
[2026-02-25 16:34:19] 2026-02-25 21:34:14,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-25 16:34:19] 2026-02-25 21:34:18,802 | INFO     | PID=698 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-02-25 16:34:19] 2026-02-25 21:34:18,803 | INFO     | found 0 job(s) in 20 queues
[2026-02-25 16:34:19] 2026-02-25 21:34:18,803 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-25 16:34:19] 2026-02-25 21:34:18,803 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-25 16:34:19] 2026-02-25 21:34:18,803 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-25 16:34:19] 2026-02-25 21:34:18,803 | INFO     | [monitor] control thread has ended
[2026-02-25 16:34:19] 2026-02-25 21:34:18,920 [wrapper] ==== pilot stdout END ====
[2026-02-25 16:34:19] 2026-02-25 21:34:18,925 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-25 16:34:19] 2026-02-25 21:34:18,929 [wrapper] pilotpid: 698
[2026-02-25 16:34:19] 2026-02-25 21:34:18,932 [wrapper] Pilot exit status: 0
[2026-02-25 16:34:19] 2026-02-25 21:34:18,947 [wrapper] pandaids: 7030275590 7030275590
[2026-02-25 16:34:19] 2026-02-25 21:34:18,991 [wrapper] cleanup supervisor_pilot 23303 699
[2026-02-25 16:34:19] 2026-02-25 21:34:18,994 [wrapper] Test setup, not cleaning
[2026-02-25 16:34:19] 2026-02-25 21:34:18,998 [wrapper] apfmon messages muted
[2026-02-25 16:34:19] 2026-02-25 21:34:19,003 [wrapper] ==== wrapper stdout END ====
[2026-02-25 16:34:19] 2026-02-25 21:34:19,007 [wrapper] ==== wrapper stderr END ====
[2026-02-25 16:34:19]  *** Error codes and diagnostics ***
[2026-02-25 16:34:19]     "exeErrorCode": 0,
[2026-02-25 16:34:19]     "exeErrorDiag": "",
[2026-02-25 16:34:19]     "pilotErrorCode": 0,
[2026-02-25 16:34:19]     "pilotErrorDiag": "",
[2026-02-25 16:34:19]  *** Listing of results directory ***
[2026-02-25 16:34:19] total 796200
[2026-02-25 16:34:19] drwx------ 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas    584627 Feb 25 08:38 pilot3.tar.gz
[2026-02-25 16:34:19] -rwx------ 1 boincer umatlas     36322 Feb 25 08:38 runpilot2-wrapper.sh
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas      5111 Feb 25 08:40 queuedata.json
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas       100 Feb 25 12:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-25 16:34:19] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 12:39 run_atlas
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas       105 Feb 25 12:39 job.xml
[2026-02-25 16:34:19] -rw-r--r-- 3 boincer umatlas 289074908 Feb 25 12:39 EVNT.48220085._000121.pool.root.1
[2026-02-25 16:34:19] -rw-r--r-- 3 boincer umatlas 289074908 Feb 25 12:39 ATLAS.root_0
[2026-02-25 16:34:19] -rw-r--r-- 2 boincer umatlas     15845 Feb 25 12:39 start_atlas.sh
[2026-02-25 16:34:19] drwxrwx--x 2 boincer umatlas      4096 Feb 25 12:39 shared
[2026-02-25 16:34:19] -rw-r--r-- 2 boincer umatlas    597964 Feb 25 12:39 input.tar.gz
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas         0 Feb 25 12:39 boinc_lockfile
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas      2568 Feb 25 14:12 pandaJob.out
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas        57 Feb 25 14:12 setup.sh.local
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas    995728 Feb 25 14:12 agis_schedconf.cvmfs.json
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas       432 Feb 25 14:12 workernode_map.json
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas      5910 Feb 25 16:28 init_data.xml
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas 230084443 Feb 25 16:33 HITS.48838416._002966.pool.root.1
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas       531 Feb 25 16:33 boinc_task_state.xml
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas      1055 Feb 25 16:33 memory_monitor_summary.json
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas   1513015 Feb 25 16:33 agis_ddmendpoints.agis.ALL.json
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas    387202 Feb 25 16:33 log.48838416._002966.job.log.tgz.1
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas      6404 Feb 25 16:33 heartbeat.json
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas        28 Feb 25 16:34 wrapper_checkpoint.txt
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 16:34 boinc_mmap_file
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas        96 Feb 25 16:34 pilot_heartbeat.json
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas       743 Feb 25 16:34 pilotlog.txt
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas   1184666 Feb 25 16:34 log.48838416._002966.job.log.1
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas       357 Feb 25 16:34 output.list
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas       620 Feb 25 16:34 runtime_log
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas   1587200 Feb 25 16:34 result.tar.gz
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas      9421 Feb 25 16:34 runtime_log.err
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas       784 Feb 25 16:34 34ZNDmNHUF9n9Rq4apOajLDm4fhM0noT9bVooX4SDm5ayKDmvqNaum.diag
[2026-02-25 16:34:19] -rw-r--r-- 1 boincer umatlas     23167 Feb 25 16:34 stderr.txt
[2026-02-25 16:34:19] HITS file was successfully produced:
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas 230084443 Feb 25 16:33 shared/HITS.pool.root.1
[2026-02-25 16:34:19]  *** Contents of shared directory: ***
[2026-02-25 16:34:19] total 509152
[2026-02-25 16:34:19] -rw-r--r-- 3 boincer umatlas 289074908 Feb 25 12:39 ATLAS.root_0
[2026-02-25 16:34:19] -rw-r--r-- 2 boincer umatlas     15845 Feb 25 12:39 start_atlas.sh
[2026-02-25 16:34:19] -rw-r--r-- 2 boincer umatlas    597964 Feb 25 12:39 input.tar.gz
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas 230084443 Feb 25 16:33 HITS.pool.root.1
[2026-02-25 16:34:19] -rw------- 1 boincer umatlas   1587200 Feb 25 16:34 result.tar.gz
16:34:20 (29094): run_atlas exited; CPU time 60624.505536
16:34:20 (29094): called boinc_finish(0)

</stderr_txt>
]]>

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