Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
09:37:43 (1035513): wrapper (7.7.26015): starting
09:37:43 (1035513): wrapper: running run_atlas (--nthreads 4)
[2026-02-27 09:37:43] Arguments: --nthreads 4
[2026-02-27 09:37:43] Threads: 4
[2026-02-27 09:37:43] Checking for CVMFS
[2026-02-27 09:37:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-27 09:37:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-27 09:37:43] Running cvmfs_config stat atlas.cern.ch
[2026-02-27 09:37:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-27 09:37:43] 2.13.3.0 11582 16373 45716 156687 0 50 30049901 33554433 0 130560 0 6391316 99.984 570270 278 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-02-27 09:37:43] CVMFS is ok
[2026-02-27 09:37:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-27 09:37:43] Checking for apptainer binary...
[2026-02-27 09:37:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-27 09:37:43] Running /usr/bin/apptainer --version
[2026-02-27 09:37:43] apptainer version 1.4.5
[2026-02-27 09:37:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-27 09:37:43] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-02-27 09:37:43] apptainer works
[2026-02-27 09:37:43] Set ATHENA_PROC_NUMBER=4
[2026-02-27 09:37:43] Set ATHENA_CORE_NUMBER=4
[2026-02-27 09:37:43] Starting ATLAS job with PandaID=7030297975
[2026-02-27 09:37:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-27 10:42:07]  *** The last 200 lines of the pilot log: ***
[2026-02-27 10:42:07]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-27 10:42:07]  is_altstaged=None
[2026-02-27 10:42:07]  is_tar=False
[2026-02-27 10:42:07]  lfn=log.48838620._000022.job.log.tgz.1
[2026-02-27 10:42:07]  mtime=0
[2026-02-27 10:42:07]  protocol_id=None
[2026-02-27 10:42:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-27 10:42:07]  replicas=None
[2026-02-27 10:42:07]  scope=mc23_13p6TeV
[2026-02-27 10:42:07]  status=None
[2026-02-27 10:42:07]  status_code=0
[2026-02-27 10:42:07]  storage_token=
[2026-02-27 10:42:07]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7030297975/log.48838620._000022.job.log.tgz.1
[2026-02-27 10:42:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/22/log.48838620._000022.job.log.tgz.1
[2026-02-27 10:42:07]  workdir=None
[2026-02-27 10:42:07] ]
[2026-02-27 10:42:07] 2026-02-27 08:41:31,756 | INFO     | transferring file log.48838620._000022.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7030297975/log.48838620._000022.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-02-27 10:42:07] 2026-02-27 08:41:31,756 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7030297975/log.48838620._000022.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48838620._000022.job
[2026-02-27 10:42:07] 2026-02-27 08:41:31,764 | INFO     | adding to output.list: log.48838620._000022.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/22/log.48838620._000022.job.log.tg
[2026-02-27 10:42:07] 2026-02-27 08:41:31,764 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-27 10:42:07] 2026-02-27 08:41:31,764 | INFO     | summary of transferred files:
[2026-02-27 10:42:07] 2026-02-27 08:41:31,764 | INFO     |  -- lfn=log.48838620._000022.job.log.tgz.1, status_code=0, status=transferred
[2026-02-27 10:42:07] 2026-02-27 08:41:31,764 | INFO     | stage-out finished correctly
[2026-02-27 10:42:07] 2026-02-27 08:41:31,789 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-27 10:42:07] 2026-02-27 08:41:31,841 | INFO     | time since job start (3821s) is within the limit (349056.0s)
[2026-02-27 10:42:07] 2026-02-27 08:41:32,760 | WARNING  | process 1044181 can no longer be monitored (due to stat problems) - aborting
[2026-02-27 10:42:07] 2026-02-27 08:41:32,760 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7030297975/memory_monitor_summary.json (trf name=prmon)
[2026-02-27 10:42:07] 2026-02-27 08:41:32,845 | INFO     | number of running child processes to parent process 1044181: 1
[2026-02-27 10:42:07] 2026-02-27 08:41:32,846 | INFO     | maximum number of monitored processes: 6
[2026-02-27 10:42:07] 2026-02-27 08:41:33,421 | INFO     | job 7030297975 has state=finished
[2026-02-27 10:42:07] 2026-02-27 08:41:33,421 | INFO     | preparing for final server update for job 7030297975 in state='finished'
[2026-02-27 10:42:07] 2026-02-27 08:41:33,846 | INFO     | time since job start (3823s) is within the limit (349056.0s)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,273 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,273 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7030297975/jobReport.json
[2026-02-27 10:42:07] 2026-02-27 08:41:34,274 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-02-27 10:42:07] 2026-02-27 08:41:34,274 | INFO     | this job has now completed (state=finished)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,274 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,274 | INFO     | log transfer has been attempted: DONE
[2026-02-27 10:42:07] 2026-02-27 08:41:34,274 | INFO     | job 7030297975 has finished - writing final server update
[2026-02-27 10:42:07] 2026-02-27 08:41:34,274 | INFO     | total number of processed events: 400 (read)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,276 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7030297975/memory_monitor_summary.json (trf name=prmon)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,276 | INFO     | extracted standard info from prmon json
[2026-02-27 10:42:07] 2026-02-27 08:41:34,276 | INFO     | extracted standard memory fields from prmon json
[2026-02-27 10:42:07] 2026-02-27 08:41:34,276 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-27 10:42:07] 2026-02-27 08:41:34,276 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-27 10:42:07] 2026-02-27 08:41:34,276 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-27 10:42:07] 2026-02-27 08:41:34,276 | INFO     | fitting pss+swap vs Time
[2026-02-27 10:42:07] 2026-02-27 08:41:34,276 | INFO     | sum of square deviations: 54438230.0
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | sum of deviations: -9648871206.5
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | mean x: 1772179868.5
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | mean y: 2604133.660714286
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | intersect: 314111554882.2175
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | chi2: 0.10362540897519631
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | current memory leak: -177.24 B/s (using 56 data points, chi2=0.10)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | could have reported an average CPU frequency of 3175 MHz (6 samples)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | ..............................
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | . Timing measurements:
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | . get job = 0 s
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | . initial setup = 3 s
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | . payload setup = 2 s
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | . stage-in = 0 s
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | . payload execution = 3804 s
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | . stage-out = 0 s
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | . log creation = 0 s
[2026-02-27 10:42:07] 2026-02-27 08:41:34,277 | INFO     | ..............................
[2026-02-27 10:42:07] 2026-02-27 08:41:34,470 | INFO     | 
[2026-02-27 10:42:07] 2026-02-27 08:41:34,470 | INFO     | job summary report
[2026-02-27 10:42:07] 2026-02-27 08:41:34,470 | INFO     | --------------------------------------------------
[2026-02-27 10:42:07] 2026-02-27 08:41:34,470 | INFO     | PanDA job id: 7030297975
[2026-02-27 10:42:07] 2026-02-27 08:41:34,470 | INFO     | task id: 48838620
[2026-02-27 10:42:07] 2026-02-27 08:41:34,470 | INFO     | errors: (none)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | pilot state: finished 
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | transexitcode: 0
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | exeerrorcode: 0
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | exeerrordiag: 
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | exitcode: 0
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | exitmsg: OK
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | cpuconsumptiontime: 14560 s
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | nevents: 400
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | neventsw: 0
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | pid: 1044181
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | pgrp: 1044181
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | corecount: 4
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | event service: False
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | sizes: {0: 2282266, 11: 2282266, 3809: 2308191, 3810: 2317245, 3812: 2317383}
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | --------------------------------------------------
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | 
[2026-02-27 10:42:07] 2026-02-27 08:41:34,471 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-02-27 10:42:07] 2026-02-27 08:41:34,479 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,479 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,479 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,479 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,479 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,479 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,479 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,479 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,479 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,479 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | job 7030297975 has completed (purged errors)
[2026-02-27 10:42:07] 2026-02-27 08:41:34,480 | INFO     | overall cleanup function is called
[2026-02-27 10:42:07] 2026-02-27 08:41:35,486 | INFO     | --- collectZombieJob: --- 10, [1044181]
[2026-02-27 10:42:07] 2026-02-27 08:41:35,487 | INFO     | zombie collector waiting for pid 1044181
[2026-02-27 10:42:07] 2026-02-27 08:41:35,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-27 10:42:07] 2026-02-27 08:41:35,487 | INFO     | collected zombie processes
[2026-02-27 10:42:07] 2026-02-27 08:41:35,487 | INFO     | will attempt to kill all subprocesses of pid=1044181
[2026-02-27 10:42:07] 2026-02-27 08:41:35,577 | INFO     | process IDs to be killed: [1044181] (in reverse order)
[2026-02-27 10:42:07] 2026-02-27 08:41:35,607 | WARNING  | found no corresponding commands to process id(s)
[2026-02-27 10:42:07] 2026-02-27 08:41:35,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-27 10:42:07] 2026-02-27 08:41:35,610 | INFO     | did not find any defunct processes belonging to 1044181
[2026-02-27 10:42:07] 2026-02-27 08:41:35,612 | INFO     | did not find any defunct processes belonging to 1044181
[2026-02-27 10:42:07] 2026-02-27 08:41:35,612 | INFO     | ready for new job
[2026-02-27 10:42:07] 2026-02-27 08:41:35,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-27 10:42:07] 2026-02-27 08:41:35,613 | INFO     | **************************************
[2026-02-27 10:42:07] 2026-02-27 08:41:35,613 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-27 10:42:07] 2026-02-27 08:41:35,613 | INFO     | **************************************
[2026-02-27 10:42:07] 2026-02-27 08:41:35,613 | INFO     | 
[2026-02-27 10:42:07] 2026-02-27 08:41:35,614 | INFO     | architecture information:
[2026-02-27 10:42:07] 2026-02-27 08:41:35,614 | INFO     | executing command: cat /etc/os-release
[2026-02-27 10:42:07] 2026-02-27 08:41:35,620 | INFO     | cat /etc/os-release:
[2026-02-27 10:42:07] NAME="CentOS Linux"
[2026-02-27 10:42:07] VERSION="7 (Core)"
[2026-02-27 10:42:07] ID="centos"
[2026-02-27 10:42:07] ID_LIKE="rhel fedora"
[2026-02-27 10:42:07] VERSION_ID="7"
[2026-02-27 10:42:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-27 10:42:07] ANSI_COLOR="0;31"
[2026-02-27 10:42:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-27 10:42:07] HOME_URL="https://www.centos.org/"
[2026-02-27 10:42:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-27 10:42:07] 
[2026-02-27 10:42:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-27 10:42:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-27 10:42:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-27 10:42:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-27 10:42:07] 
[2026-02-27 10:42:07] 2026-02-27 08:41:35,620 | INFO     | **************************************
[2026-02-27 10:42:07] 2026-02-27 08:41:36,122 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-02-27 10:42:07] 2026-02-27 08:41:36,128 | INFO     | sufficient remaining disk space (60653830144 B)
[2026-02-27 10:42:07] 2026-02-27 08:41:36,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-27 10:42:07] 2026-02-27 08:41:36,129 | INFO     | current server update state: UPDATING_FINAL
[2026-02-27 10:42:07] 2026-02-27 08:41:36,129 | INFO     | update_server=False
[2026-02-27 10:42:07] 2026-02-27 08:41:36,129 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-27 10:42:07] 2026-02-27 08:41:36,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-27 10:42:07] 2026-02-27 08:41:36,321 | INFO     | all payload control threads have been joined
[2026-02-27 10:42:07] 2026-02-27 08:41:36,351 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-27 10:42:07] 2026-02-27 08:41:36,351 | INFO     | aborting loop
[2026-02-27 10:42:07] 2026-02-27 08:41:36,756 | INFO     | all data control threads have been joined
[2026-02-27 10:42:07] 2026-02-27 08:41:37,132 | INFO     | [job] retrieve thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:37,133 | INFO     | [job] queue monitor thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:37,208 | INFO     | all job control threads have been joined
[2026-02-27 10:42:07] 2026-02-27 08:41:37,302 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-27 10:42:07] 2026-02-27 08:41:37,327 | INFO     | [payload] control thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:37,334 | INFO     | [payload] validate_post thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:37,356 | INFO     | [job] job monitor thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:37,448 | INFO     | [payload] failed_post thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:37,760 | INFO     | [data] control thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:37,817 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-27 10:42:07] 2026-02-27 08:41:38,213 | INFO     | [job] control thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:38,369 | INFO     | [job] create_data_payload thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:38,380 | INFO     | [job] validate thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:38,510 | INFO     | [payload] execute_payloads thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:38,511 | INFO     | [payload] validate_pre thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:38,577 | INFO     | [data] copytool_in thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:39,305 | INFO     | [data] copytool_out thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:41,822 | INFO     | [data] queue_monitor thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:46,457 | INFO     | job.realtimelogging is not enabled
[2026-02-27 10:42:07] 2026-02-27 08:41:47,462 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-27 10:42:07] 2026-02-27 08:41:54,563 | INFO     | [monitor] cgroup control has ended
[2026-02-27 10:42:07] 2026-02-27 08:41:55,568 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139938696206144)>', '<ExcThread(monitor, started 139938070779648)>']
[2026-02-27 10:42:07] 2026-02-27 08:42:00,593 | INFO     | all workflow threads have been joined
[2026-02-27 10:42:07] 2026-02-27 08:42:00,594 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-27 10:42:07] 2026-02-27 08:42:00,594 | INFO     | traces error code: 0
[2026-02-27 10:42:07] 2026-02-27 08:42:00,594 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-27 10:42:07] 2026-02-27 08:42:07,008 | INFO     | PID=1039545 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-27 10:42:07] 2026-02-27 08:42:07,008 | INFO     | found 0 job(s) in 20 queues
[2026-02-27 10:42:07] 2026-02-27 08:42:07,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-27 10:42:07] 2026-02-27 08:42:07,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-27 10:42:07] 2026-02-27 08:42:07,008 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-27 10:42:07] 2026-02-27 08:42:07,008 | INFO     | [monitor] control thread has ended
[2026-02-27 10:42:07] 2026-02-27 08:42:07,046 [wrapper] ==== pilot stdout END ====
[2026-02-27 10:42:07] 2026-02-27 08:42:07,048 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-27 10:42:07] 2026-02-27 08:42:07,049 [wrapper] pilotpid: 1039545
[2026-02-27 10:42:07] 2026-02-27 08:42:07,051 [wrapper] Pilot exit status: 0
[2026-02-27 10:42:07] 2026-02-27 08:42:07,056 [wrapper] pandaids: 7030297975
[2026-02-27 10:42:07] 2026-02-27 08:42:07,078 [wrapper] cleanup supervisor_pilot 1088773 1039546
[2026-02-27 10:42:07] 2026-02-27 08:42:07,080 [wrapper] Test setup, not cleaning
[2026-02-27 10:42:07] 2026-02-27 08:42:07,081 [wrapper] apfmon messages muted
[2026-02-27 10:42:07] 2026-02-27 08:42:07,082 [wrapper] ==== wrapper stdout END ====
[2026-02-27 10:42:07] 2026-02-27 08:42:07,084 [wrapper] ==== wrapper stderr END ====
[2026-02-27 10:42:07]  *** Error codes and diagnostics ***
[2026-02-27 10:42:07]     "exeErrorCode": 0,
[2026-02-27 10:42:07]     "exeErrorDiag": "",
[2026-02-27 10:42:07]     "pilotErrorCode": 0,
[2026-02-27 10:42:07]     "pilotErrorDiag": "",
[2026-02-27 10:42:07]  *** Listing of results directory ***
[2026-02-27 10:42:07] total 468592
[2026-02-27 10:42:07] -rw-r--r-- 1 ek ek    584627 Feb 25 17:36 pilot3.tar.gz
[2026-02-27 10:42:07] -rwx------ 1 ek ek     36322 Feb 25 17:39 runpilot2-wrapper.sh
[2026-02-27 10:42:07] -rw-r--r-- 1 ek ek      5111 Feb 25 17:42 queuedata.json
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek       100 Feb 27 09:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-27 10:42:07] -rwxr-xr-x 1 ek ek      7986 Feb 27 09:37 run_atlas
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek       105 Feb 27 09:37 job.xml
[2026-02-27 10:42:07] -rw-r--r-- 2 ek ek 270759860 Feb 27 09:37 EVNT.48343799._000001.pool.root.1
[2026-02-27 10:42:07] -rw-r--r-- 2 ek ek    597963 Feb 27 09:37 input.tar.gz
[2026-02-27 10:42:07] -rw-r--r-- 2 ek ek     15845 Feb 27 09:37 start_atlas.sh
[2026-02-27 10:42:07] drwxrwx--x 2 ek ek      4096 Feb 27 09:37 shared
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek         0 Feb 27 09:37 boinc_setup_complete
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek      9840 Feb 27 09:37 init_data.xml
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek         0 Feb 27 09:37 boinc_lockfile
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek      2561 Feb 27 09:37 pandaJob.out
[2026-02-27 10:42:07] -rw------- 1 ek ek        50 Feb 27 09:37 setup.sh.local
[2026-02-27 10:42:07] -rw------- 1 ek ek    998489 Feb 27 09:37 agis_schedconf.cvmfs.json
[2026-02-27 10:42:07] -rw------- 1 ek ek   1513015 Feb 27 09:37 agis_ddmendpoints.agis.ALL.json
[2026-02-27 10:42:07] -rw------- 1 ek ek       433 Feb 27 09:37 workernode_map.json
[2026-02-27 10:42:07] drwx------ 5 ek ek      4096 Feb 27 09:37 pilot3
[2026-02-27 10:42:07] -rw------- 1 ek ek 203466603 Feb 27 10:41 HITS.48838620._000022.pool.root.1
[2026-02-27 10:42:07] -rw------- 1 ek ek        95 Feb 27 10:41 pilot_heartbeat.json
[2026-02-27 10:42:07] -rw------- 1 ek ek      1029 Feb 27 10:41 memory_monitor_summary.json
[2026-02-27 10:42:07] -rw------- 1 ek ek    266084 Feb 27 10:41 log.48838620._000022.job.log.tgz.1
[2026-02-27 10:42:07] -rw------- 1 ek ek      6318 Feb 27 10:41 heartbeat.json
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek      8192 Feb 27 10:41 boinc_mmap_file
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek        27 Feb 27 10:41 wrapper_checkpoint.txt
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek       529 Feb 27 10:41 boinc_task_state.xml
[2026-02-27 10:42:07] -rw------- 1 ek ek       747 Feb 27 10:42 pilotlog.txt
[2026-02-27 10:42:07] -rw------- 1 ek ek    572520 Feb 27 10:42 log.48838620._000022.job.log.1
[2026-02-27 10:42:07] -rw------- 1 ek ek       357 Feb 27 10:42 output.list
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek       620 Feb 27 10:42 runtime_log
[2026-02-27 10:42:07] -rw------- 1 ek ek    860160 Feb 27 10:42 result.tar.gz
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek      9501 Feb 27 10:42 runtime_log.err
[2026-02-27 10:42:07] -rw------- 1 ek ek       660 Feb 27 10:42 1BFKDmy9VF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmxwyKDmjE6oLn.diag
[2026-02-27 10:42:07] -rw-rw-r-- 1 ek ek     21264 Feb 27 10:42 stderr.txt
[2026-02-27 10:42:07] HITS file was successfully produced:
[2026-02-27 10:42:07] -rw------- 1 ek ek 203466603 Feb 27 10:41 shared/HITS.pool.root.1
[2026-02-27 10:42:07]  *** Contents of shared directory: ***
[2026-02-27 10:42:07] total 464564
[2026-02-27 10:42:07] -rw-r--r-- 2 ek ek 270759860 Feb 27 09:37 ATLAS.root_0
[2026-02-27 10:42:07] -rw-r--r-- 2 ek ek    597963 Feb 27 09:37 input.tar.gz
[2026-02-27 10:42:07] -rw-r--r-- 2 ek ek     15845 Feb 27 09:37 start_atlas.sh
[2026-02-27 10:42:07] -rw------- 1 ek ek 203466603 Feb 27 10:41 HITS.pool.root.1
[2026-02-27 10:42:07] -rw------- 1 ek ek    860160 Feb 27 10:42 result.tar.gz
10:42:08 (1035513): run_atlas exited; CPU time 14592.485275
10:42:08 (1035513): called boinc_finish(0)

</stderr_txt>
]]>

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