Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:53:47 (109323): wrapper (7.7.26015): starting
01:53:47 (109323): wrapper: running run_atlas (--nthreads 3)
[2026-02-26 01:53:47] Arguments: --nthreads 3
[2026-02-26 01:53:47] Threads: 3
[2026-02-26 01:53:47] Checking for CVMFS
[2026-02-26 01:53:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-26 01:53:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-26 01:53:47] Running cvmfs_config stat atlas.cern.ch
[2026-02-26 01:53:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-26 01:53:48] 2.9.2.0 38641 468 64768 156636 0 50 28026138 36864000 0 130560 0 200539 99.973 27195 22327 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-26 01:53:48] CVMFS is ok
[2026-02-26 01:53:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-26 01:53:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-26 01:53:48] Further information can be found at the LHC@home message board.
[2026-02-26 01:53:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-26 01:53:48] Checking for apptainer binary...
[2026-02-26 01:53:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-26 01:53:48] Running /usr/bin/apptainer --version
[2026-02-26 01:53:48] apptainer version 1.4.1-1.1
[2026-02-26 01:53:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-26 01:53:48] magicA161
[2026-02-26 01:53:48] apptainer works
[2026-02-26 01:53:48] Set ATHENA_PROC_NUMBER=3
[2026-02-26 01:53:48] Set ATHENA_CORE_NUMBER=3
[2026-02-26 01:53:48] Starting ATLAS job with PandaID=7030304832
[2026-02-26 01:53:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-26 03:27:23]  *** The last 200 lines of the pilot log: ***
[2026-02-26 03:27:23] 2026-02-26 02:26:52,857 | INFO     | maximum number of monitored processes: 6
[2026-02-26 03:27:23] 2026-02-26 02:26:52,857 | INFO     | aborting job monitoring since job object (job id=7030304832) has expired
[2026-02-26 03:27:23] 2026-02-26 02:26:52,873 | INFO     | --- collectZombieJob: --- 10, [117799]
[2026-02-26 03:27:23] 2026-02-26 02:26:52,873 | INFO     | zombie collector waiting for pid 117799
[2026-02-26 03:27:23] 2026-02-26 02:26:52,873 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-26 03:27:23] 2026-02-26 02:26:52,873 | INFO     | collected zombie processes
[2026-02-26 03:27:23] 2026-02-26 02:26:52,873 | INFO     | will attempt to kill all subprocesses of pid=117799
[2026-02-26 03:27:23] 2026-02-26 02:26:52,912 | INFO     | process IDs to be killed: [117799] (in reverse order)
[2026-02-26 03:27:23] 2026-02-26 02:26:52,938 | WARNING  | found no corresponding commands to process id(s)
[2026-02-26 03:27:23] 2026-02-26 02:26:52,938 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-26 03:27:23] 2026-02-26 02:26:52,939 | INFO     | did not find any defunct processes belonging to 117799
[2026-02-26 03:27:23] 2026-02-26 02:26:52,940 | INFO     | did not find any defunct processes belonging to 117799
[2026-02-26 03:27:23] 2026-02-26 02:26:52,940 | INFO     | ready for new job
[2026-02-26 03:27:23] 2026-02-26 02:26:52,940 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-26 03:27:23] 2026-02-26 02:26:52,941 | INFO     | **************************************
[2026-02-26 03:27:23] 2026-02-26 02:26:52,941 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-26 03:27:23] 2026-02-26 02:26:52,941 | INFO     | **************************************
[2026-02-26 03:27:23] 2026-02-26 02:26:52,941 | INFO     | 
[2026-02-26 03:27:23] 2026-02-26 02:26:52,941 | INFO     | architecture information:
[2026-02-26 03:27:23] 2026-02-26 02:26:52,942 | INFO     | executing command: cat /etc/os-release
[2026-02-26 03:27:23] 2026-02-26 02:26:52,951 | INFO     | cat /etc/os-release:
[2026-02-26 03:27:23] NAME="CentOS Linux"
[2026-02-26 03:27:23] VERSION="7 (Core)"
[2026-02-26 03:27:23] ID="centos"
[2026-02-26 03:27:23] ID_LIKE="rhel fedora"
[2026-02-26 03:27:23] VERSION_ID="7"
[2026-02-26 03:27:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-26 03:27:23] ANSI_COLOR="0;31"
[2026-02-26 03:27:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-26 03:27:23] HOME_URL="https://www.centos.org/"
[2026-02-26 03:27:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-26 03:27:23] 
[2026-02-26 03:27:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-26 03:27:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-26 03:27:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-26 03:27:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-26 03:27:23] 
[2026-02-26 03:27:23] 2026-02-26 02:26:52,951 | INFO     | **************************************
[2026-02-26 03:27:23] 2026-02-26 02:26:53,455 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-26 03:27:23] 2026-02-26 02:26:53,467 | INFO     | sufficient remaining disk space (376000479232 B)
[2026-02-26 03:27:23] 2026-02-26 02:26:53,468 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-26 03:27:23] 2026-02-26 02:26:53,468 | INFO     | current server update state: UPDATING_FINAL
[2026-02-26 03:27:23] 2026-02-26 02:26:53,468 | INFO     | update_server=False
[2026-02-26 03:27:23] 2026-02-26 02:26:53,468 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-26 03:27:23] 2026-02-26 02:26:53,468 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-26 03:27:23] 2026-02-26 02:26:53,468 | INFO     | will abort loop
[2026-02-26 03:27:23] 2026-02-26 02:26:53,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-26 03:27:23] 2026-02-26 02:26:53,669 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-26 03:27:23] 2026-02-26 02:26:53,895 | INFO     | all payload control threads have been joined
[2026-02-26 03:27:23] 2026-02-26 02:26:54,263 | INFO     | all data control threads have been joined
[2026-02-26 03:27:23] 2026-02-26 02:26:54,404 | INFO     | all job control threads have been joined
[2026-02-26 03:27:23] 2026-02-26 02:26:54,474 | INFO     | [job] job monitor thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:54,474 | INFO     | [job] retrieve thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:54,474 | INFO     | [job] queue monitor thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:54,901 | INFO     | [payload] control thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:55,002 | INFO     | [payload] validate_post thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:55,269 | INFO     | [data] control thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:55,409 | INFO     | [job] control thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:55,520 | INFO     | [payload] execute_payloads thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:55,557 | INFO     | [job] validate thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:55,675 | INFO     | [data] copytool_out thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:55,683 | INFO     | [job] create_data_payload thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:55,743 | INFO     | [data] copytool_in thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:55,743 | INFO     | [payload] validate_pre thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:56,068 | INFO     | [payload] failed_post thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:26:56,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-26 03:27:23] 2026-02-26 02:27:00,460 | INFO     | [data] queue_monitor thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:27:03,581 | INFO     | job.realtimelogging is not enabled
[2026-02-26 03:27:23] 2026-02-26 02:27:04,587 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-26 03:27:23] 2026-02-26 02:27:05,821 | INFO     | [monitor] cgroup control has ended
[2026-02-26 03:27:23] 2026-02-26 02:27:07,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139961100568384)>', '<ExcThread(monitor, started 139960594179840)>']
[2026-02-26 03:27:23] 2026-02-26 02:27:12,954 | INFO     | all workflow threads have been joined
[2026-02-26 03:27:23] 2026-02-26 02:27:12,955 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-26 03:27:23] 2026-02-26 02:27:12,956 | INFO     | traces error code: 0
[2026-02-26 03:27:23] 2026-02-26 02:27:12,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-26 03:27:23] 2026-02-26 02:27:23,009 | INFO     | PID=113369 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-26 03:27:23] 2026-02-26 02:27:23,009 | INFO     | found 0 job(s) in 20 queues
[2026-02-26 03:27:23] 2026-02-26 02:27:23,009 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-26 03:27:23] 2026-02-26 02:27:23,009 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-26 03:27:23] 2026-02-26 02:27:23,009 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-26 03:27:23] 2026-02-26 02:27:23,009 | INFO     | [monitor] control thread has ended
[2026-02-26 03:27:23] 2026-02-26 02:27:23,054 [wrapper] ==== pilot stdout END ====
[2026-02-26 03:27:23] 2026-02-26 02:27:23,056 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-26 03:27:23] 2026-02-26 02:27:23,059 [wrapper] pilotpid: 113369
[2026-02-26 03:27:23] 2026-02-26 02:27:23,061 [wrapper] Pilot exit status: 0
[2026-02-26 03:27:23] 2026-02-26 02:27:23,069 [wrapper] pandaids: 7030304832
[2026-02-26 03:27:23] 2026-02-26 02:27:23,085 [wrapper] cleanup supervisor_pilot  124065 113370
[2026-02-26 03:27:23] 2026-02-26 02:27:23,088 [wrapper] Test setup, not cleaning
[2026-02-26 03:27:23] 2026-02-26 02:27:23,090 [wrapper] apfmon messages muted
[2026-02-26 03:27:23] 2026-02-26 02:27:23,093 [wrapper] ==== wrapper stdout END ====
[2026-02-26 03:27:23] 2026-02-26 02:27:23,095 [wrapper] ==== wrapper stderr END ====
[2026-02-26 03:27:23]  *** Error codes and diagnostics ***
[2026-02-26 03:27:23]     "exeErrorCode": 0,
[2026-02-26 03:27:23]     "exeErrorDiag": "",
[2026-02-26 03:27:23]     "pilotErrorCode": 0,
[2026-02-26 03:27:23]     "pilotErrorDiag": "",
[2026-02-26 03:27:23]  *** Listing of results directory ***
[2026-02-26 03:27:23] total 484700
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc    584627 Feb 25 16:36 pilot3.tar.gz
[2026-02-26 03:27:23] -rwx------ 1 boinc boinc     36322 Feb 25 16:38 runpilot2-wrapper.sh
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc      5111 Feb 25 16:40 queuedata.json
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc       100 Feb 26 01:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-26 03:27:23] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 01:53 run_atlas
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc       105 Feb 26 01:53 job.xml
[2026-02-26 03:27:23] -rw-r--r-- 2 boinc boinc 278843176 Feb 26 01:53 EVNT.48220133._000032.pool.root.1
[2026-02-26 03:27:23] -rw-r--r-- 2 boinc boinc    597948 Feb 26 01:53 input.tar.gz
[2026-02-26 03:27:23] -rw-r--r-- 2 boinc boinc     15845 Feb 26 01:53 start_atlas.sh
[2026-02-26 03:27:23] drwxrwx--x 2 boinc boinc      4096 Feb 26 01:53 shared
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc         0 Feb 26 01:53 boinc_setup_complete
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc      6448 Feb 26 01:53 init_data.xml
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc         0 Feb 26 01:53 boinc_lockfile
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc      2560 Feb 26 01:53 pandaJob.out
[2026-02-26 03:27:23] -rw------- 1 boinc boinc    997624 Feb 26 01:53 agis_schedconf.cvmfs.json
[2026-02-26 03:27:23] -rw------- 1 boinc boinc   1513015 Feb 26 01:53 agis_ddmendpoints.agis.ALL.json
[2026-02-26 03:27:23] -rw------- 1 boinc boinc       426 Feb 26 01:53 workernode_map.json
[2026-02-26 03:27:23] drwx------ 5 boinc boinc      4096 Feb 26 01:53 pilot3
[2026-02-26 03:27:23] -rw------- 1 boinc boinc 211465914 Feb 26 03:26 HITS.48838462._000777.pool.root.1
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc       529 Feb 26 03:26 boinc_task_state.xml
[2026-02-26 03:27:23] -rw------- 1 boinc boinc      1017 Feb 26 03:26 memory_monitor_summary.json
[2026-02-26 03:27:23] -rw------- 1 boinc boinc    245642 Feb 26 03:26 log.48838462._000777.job.log.tgz.1
[2026-02-26 03:27:23] -rw------- 1 boinc boinc      6298 Feb 26 03:26 heartbeat.json
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc      8192 Feb 26 03:27 boinc_mmap_file
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc        27 Feb 26 03:27 wrapper_checkpoint.txt
[2026-02-26 03:27:23] -rw------- 1 boinc boinc       746 Feb 26 03:27 pilotlog.txt
[2026-02-26 03:27:23] -rw------- 1 boinc boinc        95 Feb 26 03:27 pilot_heartbeat.json
[2026-02-26 03:27:23] -rw------- 1 boinc boinc    810923 Feb 26 03:27 log.48838462._000777.job.log.1
[2026-02-26 03:27:23] -rw------- 1 boinc boinc       357 Feb 26 03:27 output.list
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc       620 Feb 26 03:27 runtime_log
[2026-02-26 03:27:23] -rw------- 1 boinc boinc   1075200 Feb 26 03:27 result.tar.gz
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc      8911 Feb 26 03:27 runtime_log.err
[2026-02-26 03:27:23] -rw------- 1 boinc boinc       660 Feb 26 03:27 HzKMDmG9VF9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJV0KDmxUQ2Qn.diag
[2026-02-26 03:27:23] -rw-r--r-- 1 boinc boinc     10927 Feb 26 03:27 stderr.txt
[2026-02-26 03:27:23] HITS file was successfully produced:
[2026-02-26 03:27:23] -rw------- 1 boinc boinc 211465914 Feb 26 03:26 shared/HITS.pool.root.1
[2026-02-26 03:27:23]  *** Contents of shared directory: ***
[2026-02-26 03:27:23] total 480480
[2026-02-26 03:27:23] -rw-r--r-- 2 boinc boinc 278843176 Feb 26 01:53 ATLAS.root_0
[2026-02-26 03:27:23] -rw-r--r-- 2 boinc boinc    597948 Feb 26 01:53 input.tar.gz
[2026-02-26 03:27:23] -rw-r--r-- 2 boinc boinc     15845 Feb 26 01:53 start_atlas.sh
[2026-02-26 03:27:23] -rw------- 1 boinc boinc 211465914 Feb 26 03:26 HITS.pool.root.1
[2026-02-26 03:27:23] -rw------- 1 boinc boinc   1075200 Feb 26 03:27 result.tar.gz
03:27:25 (109323): run_atlas exited; CPU time 16029.953524
03:27:25 (109323): called boinc_finish(0)

</stderr_txt>
]]>

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