Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:09:43 (109965): wrapper (7.7.26015): starting
22:09:43 (109965): wrapper: running run_atlas (--nthreads 3)
[2026-02-25 22:09:43] Arguments: --nthreads 3
[2026-02-25 22:09:43] Threads: 3
[2026-02-25 22:09:43] Checking for CVMFS
[2026-02-25 22:09:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-25 22:09:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-25 22:09:44] Running cvmfs_config stat atlas.cern.ch
[2026-02-25 22:09:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-25 22:09:44] 2.9.2.0 56485 371 59772 156628 2 50 18593169 36864000 0 130560 0 148986 99.982 16509 19700 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-25 22:09:44] CVMFS is ok
[2026-02-25 22:09:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-25 22:09:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-25 22:09:44] Further information can be found at the LHC@home message board.
[2026-02-25 22:09:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-25 22:09:44] Checking for apptainer binary...
[2026-02-25 22:09:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-25 22:09:44] Running /usr/bin/apptainer --version
[2026-02-25 22:09:44] apptainer version 1.4.1-1.1
[2026-02-25 22:09:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-25 22:09:44] thA385
[2026-02-25 22:09:44] apptainer works
[2026-02-25 22:09:44] Set ATHENA_PROC_NUMBER=3
[2026-02-25 22:09:44] Set ATHENA_CORE_NUMBER=3
[2026-02-25 22:09:44] Starting ATLAS job with PandaID=7030275409
[2026-02-25 22:09:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-25 23:48:08]  *** The last 200 lines of the pilot log: ***
[2026-02-25 23:48:08] 2026-02-25 22:47:41,022 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,022 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,022 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,022 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,022 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,022 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,022 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,022 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,022 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,022 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,023 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,023 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,023 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,023 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,023 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-25 23:48:08] 2026-02-25 22:47:41,023 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,023 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-25 23:48:08] 2026-02-25 22:47:41,023 | INFO     | job 7030275409 has completed (purged errors)
[2026-02-25 23:48:08] 2026-02-25 22:47:41,023 | INFO     | overall cleanup function is called
[2026-02-25 23:48:08] 2026-02-25 22:47:42,028 | INFO     | --- collectZombieJob: --- 10, [118426]
[2026-02-25 23:48:08] 2026-02-25 22:47:42,028 | INFO     | zombie collector waiting for pid 118426
[2026-02-25 23:48:08] 2026-02-25 22:47:42,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-25 23:48:08] 2026-02-25 22:47:42,029 | INFO     | collected zombie processes
[2026-02-25 23:48:08] 2026-02-25 22:47:42,029 | INFO     | will attempt to kill all subprocesses of pid=118426
[2026-02-25 23:48:08] 2026-02-25 22:47:42,069 | INFO     | process IDs to be killed: [118426] (in reverse order)
[2026-02-25 23:48:08] 2026-02-25 22:47:42,095 | WARNING  | found no corresponding commands to process id(s)
[2026-02-25 23:48:08] 2026-02-25 22:47:42,095 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-25 23:48:08] 2026-02-25 22:47:42,096 | INFO     | did not find any defunct processes belonging to 118426
[2026-02-25 23:48:08] 2026-02-25 22:47:42,097 | INFO     | did not find any defunct processes belonging to 118426
[2026-02-25 23:48:08] 2026-02-25 22:47:42,097 | INFO     | ready for new job
[2026-02-25 23:48:08] 2026-02-25 22:47:42,097 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-25 23:48:08] 2026-02-25 22:47:42,098 | INFO     | **************************************
[2026-02-25 23:48:08] 2026-02-25 22:47:42,098 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-25 23:48:08] 2026-02-25 22:47:42,098 | INFO     | **************************************
[2026-02-25 23:48:08] 2026-02-25 22:47:42,098 | INFO     | 
[2026-02-25 23:48:08] 2026-02-25 22:47:42,098 | INFO     | architecture information:
[2026-02-25 23:48:08] 2026-02-25 22:47:42,099 | INFO     | executing command: cat /etc/os-release
[2026-02-25 23:48:08] 2026-02-25 22:47:42,108 | INFO     | cat /etc/os-release:
[2026-02-25 23:48:08] NAME="CentOS Linux"
[2026-02-25 23:48:08] VERSION="7 (Core)"
[2026-02-25 23:48:08] ID="centos"
[2026-02-25 23:48:08] ID_LIKE="rhel fedora"
[2026-02-25 23:48:08] VERSION_ID="7"
[2026-02-25 23:48:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-25 23:48:08] ANSI_COLOR="0;31"
[2026-02-25 23:48:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-25 23:48:08] HOME_URL="https://www.centos.org/"
[2026-02-25 23:48:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-25 23:48:08] 
[2026-02-25 23:48:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-25 23:48:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-25 23:48:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-25 23:48:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-25 23:48:08] 
[2026-02-25 23:48:08] 2026-02-25 22:47:42,108 | INFO     | **************************************
[2026-02-25 23:48:08] 2026-02-25 22:47:42,611 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-25 23:48:08] 2026-02-25 22:47:42,623 | INFO     | sufficient remaining disk space (386809200640 B)
[2026-02-25 23:48:08] 2026-02-25 22:47:42,623 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-25 23:48:08] 2026-02-25 22:47:42,623 | INFO     | current server update state: UPDATING_FINAL
[2026-02-25 23:48:08] 2026-02-25 22:47:42,623 | INFO     | update_server=False
[2026-02-25 23:48:08] 2026-02-25 22:47:42,623 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-25 23:48:08] 2026-02-25 22:47:42,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-25 23:48:08] 2026-02-25 22:47:42,624 | INFO     | aborting loop
[2026-02-25 23:48:08] 2026-02-25 22:47:42,624 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-25 23:48:08] 2026-02-25 22:47:42,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-25 23:48:08] 2026-02-25 22:47:42,624 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-25 23:48:08] 2026-02-25 22:47:42,624 | INFO     | found 0 job(s) in 20 queues
[2026-02-25 23:48:08] 2026-02-25 22:47:42,624 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-25 23:48:08] 2026-02-25 22:47:42,624 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-25 23:48:08] 2026-02-25 22:47:42,826 | INFO     | all data control threads have been joined
[2026-02-25 23:48:08] 2026-02-25 22:47:42,905 | INFO     | all payload control threads have been joined
[2026-02-25 23:48:08] 2026-02-25 22:47:43,577 | INFO     | all job control threads have been joined
[2026-02-25 23:48:08] 2026-02-25 22:47:43,629 | INFO     | [job] queue monitor thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:43,629 | INFO     | [job] retrieve thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:43,629 | INFO     | [job] job monitor thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:43,828 | INFO     | [data] control thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:43,906 | INFO     | [payload] control thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:43,992 | INFO     | [data] copytool_in thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:44,435 | INFO     | [payload] execute_payloads thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:44,496 | INFO     | [job] create_data_payload thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:44,522 | INFO     | [job] validate thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:44,582 | INFO     | [job] control thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:44,630 | INFO     | [data] copytool_out thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:44,639 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-25 23:48:08] 2026-02-25 22:47:44,893 | INFO     | [payload] failed_post thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:44,898 | INFO     | [payload] validate_pre thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:44,982 | INFO     | [payload] validate_post thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:48,645 | INFO     | [data] queue_monitor thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:47:53,306 | INFO     | job.realtimelogging is not enabled
[2026-02-25 23:48:08] 2026-02-25 22:47:54,311 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-25 23:48:08] 2026-02-25 22:48:01,825 | INFO     | [monitor] cgroup control has ended
[2026-02-25 23:48:08] 2026-02-25 22:48:03,206 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139623790233408)>', '<ExcThread(monitor, started 139622935947008)>']
[2026-02-25 23:48:08] 2026-02-25 22:48:03,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-25 23:48:08] 2026-02-25 22:48:03,732 | INFO     | [monitor] control thread has ended
[2026-02-25 23:48:08] 2026-02-25 22:48:08,220 | INFO     | all workflow threads have been joined
[2026-02-25 23:48:08] 2026-02-25 22:48:08,220 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-25 23:48:08] 2026-02-25 22:48:08,221 | INFO     | traces error code: 0
[2026-02-25 23:48:08] 2026-02-25 22:48:08,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-25 23:48:08] 2026-02-25 22:48:08,268 [wrapper] ==== pilot stdout END ====
[2026-02-25 23:48:08] 2026-02-25 22:48:08,270 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-25 23:48:08] 2026-02-25 22:48:08,272 [wrapper] pilotpid: 114002
[2026-02-25 23:48:08] 2026-02-25 22:48:08,275 [wrapper] Pilot exit status: 0
[2026-02-25 23:48:08] 2026-02-25 22:48:08,283 [wrapper] pandaids: 7030275409
[2026-02-25 23:48:08] 2026-02-25 22:48:08,300 [wrapper] cleanup supervisor_pilot  123666 114003
[2026-02-25 23:48:08] 2026-02-25 22:48:08,302 [wrapper] Test setup, not cleaning
[2026-02-25 23:48:08] 2026-02-25 22:48:08,305 [wrapper] apfmon messages muted
[2026-02-25 23:48:08] 2026-02-25 22:48:08,307 [wrapper] ==== wrapper stdout END ====
[2026-02-25 23:48:08] 2026-02-25 22:48:08,309 [wrapper] ==== wrapper stderr END ====
[2026-02-25 23:48:08]  *** Error codes and diagnostics ***
[2026-02-25 23:48:08]     "exeErrorCode": 0,
[2026-02-25 23:48:08]     "exeErrorDiag": "",
[2026-02-25 23:48:08]     "pilotErrorCode": 0,
[2026-02-25 23:48:08]     "pilotErrorDiag": "",
[2026-02-25 23:48:08]  *** Listing of results directory ***
[2026-02-25 23:48:08] total 509988
[2026-02-25 23:48:08] -rwx------ 1 boinc boinc     36322 Feb 25 14:37 runpilot2-wrapper.sh
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc      5111 Feb 25 14:38 queuedata.json
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc    584627 Feb 25 14:38 pilot3.tar.gz
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc       100 Feb 25 22:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-25 23:48:08] -rwxr-xr-x 1 boinc boinc      7986 Feb 25 22:09 run_atlas
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc       105 Feb 25 22:09 job.xml
[2026-02-25 23:48:08] -rw-r--r-- 2 boinc boinc 287898955 Feb 25 22:09 EVNT.48220101._000051.pool.root.1
[2026-02-25 23:48:08] -rw-r--r-- 2 boinc boinc    597973 Feb 25 22:09 input.tar.gz
[2026-02-25 23:48:08] -rw-r--r-- 2 boinc boinc     15845 Feb 25 22:09 start_atlas.sh
[2026-02-25 23:48:08] drwxrwx--x 2 boinc boinc      4096 Feb 25 22:09 shared
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc         0 Feb 25 22:09 boinc_setup_complete
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc      6444 Feb 25 22:09 init_data.xml
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc         0 Feb 25 22:09 boinc_lockfile
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc      2580 Feb 25 22:09 pandaJob.out
[2026-02-25 23:48:08] -rw------- 1 boinc boinc    995714 Feb 25 22:09 agis_schedconf.cvmfs.json
[2026-02-25 23:48:08] -rw------- 1 boinc boinc   1513015 Feb 25 22:09 agis_ddmendpoints.agis.ALL.json
[2026-02-25 23:48:08] -rw------- 1 boinc boinc       423 Feb 25 22:09 workernode_map.json
[2026-02-25 23:48:08] drwx------ 5 boinc boinc      4096 Feb 25 22:09 pilot3
[2026-02-25 23:48:08] -rw------- 1 boinc boinc 228189037 Feb 25 23:47 HITS.48838432._001257.pool.root.1
[2026-02-25 23:48:08] -rw------- 1 boinc boinc        95 Feb 25 23:47 pilot_heartbeat.json
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc       529 Feb 25 23:47 boinc_task_state.xml
[2026-02-25 23:48:08] -rw------- 1 boinc boinc      1019 Feb 25 23:47 memory_monitor_summary.json
[2026-02-25 23:48:08] -rw------- 1 boinc boinc    261389 Feb 25 23:47 log.48838432._001257.job.log.tgz.1
[2026-02-25 23:48:08] -rw------- 1 boinc boinc      6294 Feb 25 23:47 heartbeat.json
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc      8192 Feb 25 23:47 boinc_mmap_file
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc        27 Feb 25 23:47 wrapper_checkpoint.txt
[2026-02-25 23:48:08] -rw------- 1 boinc boinc      4624 Feb 25 23:48 pilotlog.txt
[2026-02-25 23:48:08] -rw------- 1 boinc boinc    850240 Feb 25 23:48 log.48838432._001257.job.log.1
[2026-02-25 23:48:08] -rw------- 1 boinc boinc       357 Feb 25 23:48 output.list
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc       620 Feb 25 23:48 runtime_log
[2026-02-25 23:48:08] -rw------- 1 boinc boinc   1126400 Feb 25 23:48 result.tar.gz
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc      8896 Feb 25 23:48 runtime_log.err
[2026-02-25 23:48:08] -rw------- 1 boinc boinc       657 Feb 25 23:48 bAPODm7FUF9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmVC0KDmXRzLgn.diag
[2026-02-25 23:48:08] -rw-r--r-- 1 boinc boinc     12546 Feb 25 23:48 stderr.txt
[2026-02-25 23:48:08] HITS file was successfully produced:
[2026-02-25 23:48:08] -rw------- 1 boinc boinc 228189037 Feb 25 23:47 shared/HITS.pool.root.1
[2026-02-25 23:48:08]  *** Contents of shared directory: ***
[2026-02-25 23:48:08] total 505704
[2026-02-25 23:48:08] -rw-r--r-- 2 boinc boinc 287898955 Feb 25 22:09 ATLAS.root_0
[2026-02-25 23:48:08] -rw-r--r-- 2 boinc boinc    597973 Feb 25 22:09 input.tar.gz
[2026-02-25 23:48:08] -rw-r--r-- 2 boinc boinc     15845 Feb 25 22:09 start_atlas.sh
[2026-02-25 23:48:08] -rw------- 1 boinc boinc 228189037 Feb 25 23:47 HITS.pool.root.1
[2026-02-25 23:48:08] -rw------- 1 boinc boinc   1126400 Feb 25 23:48 result.tar.gz
23:48:09 (109965): run_atlas exited; CPU time 16877.943381
23:48:09 (109965): called boinc_finish(0)

</stderr_txt>
]]>

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