Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:12:20 (83438): wrapper (7.7.26015): starting
19:12:20 (83438): wrapper: running run_atlas (--nthreads 3)
[2026-02-25 19:12:20] Arguments: --nthreads 3
[2026-02-25 19:12:20] Threads: 3
[2026-02-25 19:12:20] Checking for CVMFS
[2026-02-25 19:12:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-25 19:12:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-25 19:12:21] Running cvmfs_config stat atlas.cern.ch
[2026-02-25 19:12:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-25 19:12:21] 2.9.2.0 56485 194 55020 156622 2 49 18563111 36864000 0 130560 0 75105 99.987 9298 20169 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-25 19:12:21] CVMFS is ok
[2026-02-25 19:12:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-25 19:12:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-25 19:12:21] Further information can be found at the LHC@home message board.
[2026-02-25 19:12:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-25 19:12:21] Checking for apptainer binary...
[2026-02-25 19:12:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-25 19:12:21] Running /usr/bin/apptainer --version
[2026-02-25 19:12:21] apptainer version 1.4.1-1.1
[2026-02-25 19:12:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-25 19:12:21] thA385
[2026-02-25 19:12:21] apptainer works
[2026-02-25 19:12:21] Set ATHENA_PROC_NUMBER=3
[2026-02-25 19:12:21] Set ATHENA_CORE_NUMBER=3
[2026-02-25 19:12:21] Starting ATLAS job with PandaID=7030275205
[2026-02-25 19:12:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:27:38 (97377): wrapper (7.7.26015): starting
20:27:38 (97377): wrapper: running run_atlas (--nthreads 3)
[2026-02-25 20:27:38] Arguments: --nthreads 3
[2026-02-25 20:27:38] Threads: 3
[2026-02-25 20:27:38] This job has been restarted, cleaning up previous attempt
[2026-02-25 20:27:38] Checking for CVMFS
[2026-02-25 20:27:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-25 20:27:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-25 20:27:39] Running cvmfs_config stat atlas.cern.ch
[2026-02-25 20:27:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-25 20:27:39] 2.9.2.0 56485 269 56936 156626 3 1 18581445 36864001 0 130560 0 113976 99.978 13752 21255 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-25 20:27:39] CVMFS is ok
[2026-02-25 20:27:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-25 20:27:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-25 20:27:39] Further information can be found at the LHC@home message board.
[2026-02-25 20:27:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-25 20:27:39] Checking for apptainer binary...
[2026-02-25 20:27:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-25 20:27:39] Running /usr/bin/apptainer --version
[2026-02-25 20:27:39] apptainer version 1.4.1-1.1
[2026-02-25 20:27:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-25 20:27:40] thA385
[2026-02-25 20:27:40] apptainer works
[2026-02-25 20:27:40] Set ATHENA_PROC_NUMBER=3
[2026-02-25 20:27:40] Set ATHENA_CORE_NUMBER=3
[2026-02-25 20:27:40] Starting ATLAS job with PandaID=7030275205
[2026-02-25 20:27:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-25 22:09:20]  *** The last 200 lines of the pilot log: ***
[2026-02-25 22:09:20] 2026-02-25 21:08:48,129 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-25 22:09:20] 2026-02-25 21:08:48,129 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-25 22:09:20] 2026-02-25 21:08:48,129 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-25 22:09:20] 2026-02-25 21:08:48,130 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-25 22:09:20] 2026-02-25 21:08:48,130 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-25 22:09:20] 2026-02-25 21:08:48,130 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-25 22:09:20] 2026-02-25 21:08:48,130 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-25 22:09:20] 2026-02-25 21:08:48,130 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-25 22:09:20] 2026-02-25 21:08:48,130 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-25 22:09:20] 2026-02-25 21:08:48,130 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-25 22:09:20] 2026-02-25 21:08:48,130 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-25 22:09:20] 2026-02-25 21:08:48,130 | INFO     | job 7030275205 has completed (purged errors)
[2026-02-25 22:09:20] 2026-02-25 21:08:48,130 | INFO     | overall cleanup function is called
[2026-02-25 22:09:20] 2026-02-25 21:08:49,137 | INFO     | --- collectZombieJob: --- 10, [103815]
[2026-02-25 22:09:20] 2026-02-25 21:08:49,137 | INFO     | zombie collector waiting for pid 103815
[2026-02-25 22:09:20] 2026-02-25 21:08:49,137 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-25 22:09:20] 2026-02-25 21:08:49,137 | INFO     | collected zombie processes
[2026-02-25 22:09:20] 2026-02-25 21:08:49,137 | INFO     | will attempt to kill all subprocesses of pid=103815
[2026-02-25 22:09:20] 2026-02-25 21:08:49,179 | INFO     | process IDs to be killed: [103815] (in reverse order)
[2026-02-25 22:09:20] 2026-02-25 21:08:49,205 | WARNING  | found no corresponding commands to process id(s)
[2026-02-25 22:09:20] 2026-02-25 21:08:49,205 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-25 22:09:20] 2026-02-25 21:08:49,206 | INFO     | did not find any defunct processes belonging to 103815
[2026-02-25 22:09:20] 2026-02-25 21:08:49,207 | INFO     | did not find any defunct processes belonging to 103815
[2026-02-25 22:09:20] 2026-02-25 21:08:49,207 | INFO     | ready for new job
[2026-02-25 22:09:20] 2026-02-25 21:08:49,208 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-25 22:09:20] 2026-02-25 21:08:49,208 | INFO     | **************************************
[2026-02-25 22:09:20] 2026-02-25 21:08:49,208 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-25 22:09:20] 2026-02-25 21:08:49,208 | INFO     | **************************************
[2026-02-25 22:09:20] 2026-02-25 21:08:49,208 | INFO     | 
[2026-02-25 22:09:20] 2026-02-25 21:08:49,209 | INFO     | architecture information:
[2026-02-25 22:09:20] 2026-02-25 21:08:49,209 | INFO     | executing command: cat /etc/os-release
[2026-02-25 22:09:20] 2026-02-25 21:08:49,218 | INFO     | cat /etc/os-release:
[2026-02-25 22:09:20] NAME="CentOS Linux"
[2026-02-25 22:09:20] VERSION="7 (Core)"
[2026-02-25 22:09:20] ID="centos"
[2026-02-25 22:09:20] ID_LIKE="rhel fedora"
[2026-02-25 22:09:20] VERSION_ID="7"
[2026-02-25 22:09:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-25 22:09:20] ANSI_COLOR="0;31"
[2026-02-25 22:09:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-25 22:09:20] HOME_URL="https://www.centos.org/"
[2026-02-25 22:09:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-25 22:09:20] 
[2026-02-25 22:09:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-25 22:09:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-25 22:09:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-25 22:09:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-25 22:09:20] 
[2026-02-25 22:09:20] 2026-02-25 21:08:49,218 | INFO     | **************************************
[2026-02-25 22:09:20] 2026-02-25 21:08:49,721 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-25 22:09:20] 2026-02-25 21:08:49,735 | INFO     | sufficient remaining disk space (387108044800 B)
[2026-02-25 22:09:20] 2026-02-25 21:08:49,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-25 22:09:20] 2026-02-25 21:08:49,735 | INFO     | current server update state: UPDATING_FINAL
[2026-02-25 22:09:20] 2026-02-25 21:08:49,735 | INFO     | update_server=False
[2026-02-25 22:09:20] 2026-02-25 21:08:49,735 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-25 22:09:20] 2026-02-25 21:08:49,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-25 22:09:20] 2026-02-25 21:08:49,853 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-25 22:09:20] 2026-02-25 21:08:49,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-25 22:09:20] 2026-02-25 21:08:49,933 | INFO     | aborting loop
[2026-02-25 22:09:20] 2026-02-25 21:08:50,097 | INFO     | all job control threads have been joined
[2026-02-25 22:09:20] 2026-02-25 21:08:50,120 | INFO     | all payload control threads have been joined
[2026-02-25 22:09:20] 2026-02-25 21:08:50,737 | INFO     | [job] retrieve thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:50,740 | INFO     | [job] queue monitor thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:50,809 | INFO     | all data control threads have been joined
[2026-02-25 22:09:20] 2026-02-25 21:08:50,938 | INFO     | [job] job monitor thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:51,056 | INFO     | [data] copytool_in thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:51,103 | INFO     | [job] control thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:51,124 | INFO     | [payload] control thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:51,289 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-25 22:09:20] 2026-02-25 21:08:51,330 | INFO     | [payload] validate_pre thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:51,458 | INFO     | [job] validate thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:51,465 | INFO     | [payload] failed_post thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:51,525 | INFO     | [payload] execute_payloads thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:51,814 | INFO     | [data] control thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:51,858 | INFO     | [data] copytool_out thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:52,157 | INFO     | [payload] validate_post thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:52,198 | INFO     | [job] create_data_payload thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:08:53,716 | INFO     | [monitor] cgroup control has ended
[2026-02-25 22:09:20] 2026-02-25 21:08:55,295 | INFO     | [data] queue_monitor thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:09:00,701 | INFO     | job.realtimelogging is not enabled
[2026-02-25 22:09:20] 2026-02-25 21:09:01,707 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-25 22:09:20] 2026-02-25 21:09:03,500 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140183818397504)>', '<ExcThread(monitor, started 140183034918656)>']
[2026-02-25 22:09:20] 2026-02-25 21:09:08,522 | INFO     | all workflow threads have been joined
[2026-02-25 22:09:20] 2026-02-25 21:09:08,523 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-25 22:09:20] 2026-02-25 21:09:08,523 | INFO     | traces error code: 0
[2026-02-25 22:09:20] 2026-02-25 21:09:08,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-25 22:09:20] 2026-02-25 21:09:20,106 | INFO     | PID=101415 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-25 22:09:20] 2026-02-25 21:09:20,107 | INFO     | found 0 job(s) in 20 queues
[2026-02-25 22:09:20] 2026-02-25 21:09:20,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-25 22:09:20] 2026-02-25 21:09:20,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-25 22:09:20] 2026-02-25 21:09:20,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-25 22:09:20] 2026-02-25 21:09:20,107 | INFO     | [monitor] control thread has ended
[2026-02-25 22:09:20] 2026-02-25 21:09:20,152 [wrapper] ==== pilot stdout END ====
[2026-02-25 22:09:20] 2026-02-25 21:09:20,155 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-25 22:09:20] 2026-02-25 21:09:20,157 [wrapper] pilotpid: 101415
[2026-02-25 22:09:20] 2026-02-25 21:09:20,160 [wrapper] Pilot exit status: 0
[2026-02-25 22:09:20] 2026-02-25 21:09:20,167 [wrapper] pandaids: 7030275205 7030275205
[2026-02-25 22:09:20] 2026-02-25 21:09:20,184 [wrapper] cleanup supervisor_pilot  109116 101416
[2026-02-25 22:09:20] 2026-02-25 21:09:20,187 [wrapper] Test setup, not cleaning
[2026-02-25 22:09:20] 2026-02-25 21:09:20,189 [wrapper] apfmon messages muted
[2026-02-25 22:09:20] 2026-02-25 21:09:20,192 [wrapper] ==== wrapper stdout END ====
[2026-02-25 22:09:20] 2026-02-25 21:09:20,194 [wrapper] ==== wrapper stderr END ====
[2026-02-25 22:09:20]  *** Error codes and diagnostics ***
[2026-02-25 22:09:20]     "exeErrorCode": 0,
[2026-02-25 22:09:20]     "exeErrorDiag": "",
[2026-02-25 22:09:20]     "pilotErrorCode": 0,
[2026-02-25 22:09:20]     "pilotErrorDiag": "",
[2026-02-25 22:09:20]  *** Listing of results directory ***
[2026-02-25 22:09:20] total 789520
[2026-02-25 22:09:20] drwx------ 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-02-25 22:09:20] -rwx------ 1 boinc boinc     36322 Feb 25 14:37 runpilot2-wrapper.sh
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc      5111 Feb 25 14:38 queuedata.json
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc    584627 Feb 25 14:38 pilot3.tar.gz
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc       100 Feb 25 19:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-25 22:09:20] -rwxr-xr-x 1 boinc boinc      7986 Feb 25 19:12 run_atlas
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc       105 Feb 25 19:12 job.xml
[2026-02-25 22:09:20] -rw-r--r-- 3 boinc boinc 287299421 Feb 25 19:12 EVNT.48220101._000043.pool.root.1
[2026-02-25 22:09:20] -rw-r--r-- 3 boinc boinc 287299421 Feb 25 19:12 ATLAS.root_0
[2026-02-25 22:09:20] -rw-r--r-- 2 boinc boinc    597972 Feb 25 19:12 input.tar.gz
[2026-02-25 22:09:20] -rw-r--r-- 2 boinc boinc     15845 Feb 25 19:12 start_atlas.sh
[2026-02-25 22:09:20] drwxrwx--x 2 boinc boinc      4096 Feb 25 19:12 shared
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc         0 Feb 25 19:12 boinc_setup_complete
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc         0 Feb 25 19:12 boinc_lockfile
[2026-02-25 22:09:20] -rw------- 1 boinc boinc   1513015 Feb 25 19:12 agis_ddmendpoints.agis.ALL.json
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc      6449 Feb 25 20:27 init_data.xml
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc      2579 Feb 25 20:27 pandaJob.out
[2026-02-25 22:09:20] -rw------- 1 boinc boinc    995712 Feb 25 20:27 agis_schedconf.cvmfs.json
[2026-02-25 22:09:20] -rw------- 1 boinc boinc       422 Feb 25 20:27 workernode_map.json
[2026-02-25 22:09:20] -rw------- 1 boinc boinc 227688222 Feb 25 22:08 HITS.48838432._001053.pool.root.1
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc       530 Feb 25 22:08 boinc_task_state.xml
[2026-02-25 22:09:20] -rw------- 1 boinc boinc      1018 Feb 25 22:08 memory_monitor_summary.json
[2026-02-25 22:09:20] -rw------- 1 boinc boinc    257855 Feb 25 22:08 log.48838432._001053.job.log.tgz.1
[2026-02-25 22:09:20] -rw------- 1 boinc boinc      6292 Feb 25 22:08 heartbeat.json
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc      8192 Feb 25 22:08 boinc_mmap_file
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc        27 Feb 25 22:08 wrapper_checkpoint.txt
[2026-02-25 22:09:20] -rw------- 1 boinc boinc       746 Feb 25 22:09 pilotlog.txt
[2026-02-25 22:09:20] -rw------- 1 boinc boinc        96 Feb 25 22:09 pilot_heartbeat.json
[2026-02-25 22:09:20] -rw------- 1 boinc boinc    875469 Feb 25 22:09 log.48838432._001053.job.log.1
[2026-02-25 22:09:20] -rw------- 1 boinc boinc       357 Feb 25 22:09 output.list
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc       620 Feb 25 22:09 runtime_log
[2026-02-25 22:09:20] -rw------- 1 boinc boinc   1146880 Feb 25 22:09 result.tar.gz
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc      8981 Feb 25 22:09 runtime_log.err
[2026-02-25 22:09:20] -rw------- 1 boinc boinc       782 Feb 25 22:09 HBGLDm6FUF9n9Rq4apOajLDm4fhM0noT9bVooX4SDm9ZyKDmHiuDqn.diag
[2026-02-25 22:09:20] -rw-r--r-- 1 boinc boinc     14131 Feb 25 22:09 stderr.txt
[2026-02-25 22:09:20] HITS file was successfully produced:
[2026-02-25 22:09:20] -rw------- 1 boinc boinc 227688222 Feb 25 22:08 shared/HITS.pool.root.1
[2026-02-25 22:09:20]  *** Contents of shared directory: ***
[2026-02-25 22:09:20] total 504648
[2026-02-25 22:09:20] -rw-r--r-- 3 boinc boinc 287299421 Feb 25 19:12 ATLAS.root_0
[2026-02-25 22:09:20] -rw-r--r-- 2 boinc boinc    597972 Feb 25 19:12 input.tar.gz
[2026-02-25 22:09:20] -rw-r--r-- 2 boinc boinc     15845 Feb 25 19:12 start_atlas.sh
[2026-02-25 22:09:20] -rw------- 1 boinc boinc 227688222 Feb 25 22:08 HITS.pool.root.1
[2026-02-25 22:09:20] -rw------- 1 boinc boinc   1146880 Feb 25 22:09 result.tar.gz
22:09:21 (97377): run_atlas exited; CPU time 17421.488989
22:09:21 (97377): called boinc_finish(0)

</stderr_txt>
]]>

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